Strain Fitness in Methylophilus sp. DMC18 around GFF2105

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2103 and GFF2104 are separated by 4 nucleotidesGFF2104 and GFF2105 are separated by 9 nucleotidesGFF2105 and GFF2106 overlap by 11 nucleotides GFF2103 - Cytochrome c'', at 148,408 to 148,842 GFF2103 GFF2104 - hypothetical protein, at 148,847 to 149,431 GFF2104 GFF2105 - tRNA modification GTPase MnmE, at 149,441 to 150,796 GFF2105 GFF2106 - Membrane protein insertase YidC, at 150,786 to 152,387 GFF2106 Position (kb) 149 150 151Strain fitness (log2 ratio) -2 -1 0 1at 148.495 kb on + strand, within GFF2103at 148.495 kb on + strand, within GFF2103at 148.495 kb on + strand, within GFF2103at 148.495 kb on + strand, within GFF2103at 148.495 kb on + strand, within GFF2103at 148.495 kb on + strand, within GFF2103at 148.501 kb on + strand, within GFF2103at 148.501 kb on + strand, within GFF2103at 148.501 kb on + strand, within GFF2103at 148.502 kb on - strand, within GFF2103at 148.503 kb on + strand, within GFF2103at 148.503 kb on + strand, within GFF2103at 148.534 kb on + strand, within GFF2103at 148.534 kb on + strand, within GFF2103at 148.535 kb on - strand, within GFF2103at 148.552 kb on - strand, within GFF2103at 148.593 kb on + strand, within GFF2103at 148.599 kb on + strand, within GFF2103at 148.600 kb on - strand, within GFF2103at 148.629 kb on + strand, within GFF2103at 148.629 kb on + strand, within GFF2103at 148.701 kb on + strand, within GFF2103at 148.702 kb on - strand, within GFF2103at 148.725 kb on + strand, within GFF2103at 148.730 kb on + strand, within GFF2103at 148.730 kb on + strand, within GFF2103at 148.730 kb on + strand, within GFF2103at 148.731 kb on - strand, within GFF2103at 148.761 kb on + strand, within GFF2103at 148.803 kb on + strandat 148.810 kb on + strandat 148.810 kb on + strandat 148.810 kb on + strandat 148.811 kb on - strandat 148.833 kb on + strandat 148.840 kb on + strandat 148.840 kb on + strandat 148.851 kb on + strandat 148.851 kb on + strandat 148.851 kb on + strandat 148.851 kb on + strandat 148.851 kb on + strandat 148.851 kb on + strandat 148.852 kb on - strandat 148.856 kb on + strandat 148.856 kb on + strandat 148.875 kb on + strandat 148.913 kb on + strand, within GFF2104at 148.922 kb on + strand, within GFF2104at 148.922 kb on + strand, within GFF2104at 148.925 kb on - strand, within GFF2104at 148.950 kb on + strand, within GFF2104at 148.951 kb on - strand, within GFF2104at 148.961 kb on + strand, within GFF2104at 148.962 kb on - strand, within GFF2104at 148.971 kb on - strand, within GFF2104at 149.014 kb on + strand, within GFF2104at 149.014 kb on + strand, within GFF2104at 149.014 kb on + strand, within GFF2104at 149.014 kb on + strand, within GFF2104at 149.041 kb on + strand, within GFF2104at 149.041 kb on + strand, within GFF2104at 149.081 kb on + strand, within GFF2104at 149.089 kb on + strand, within GFF2104at 149.111 kb on + strand, within GFF2104at 149.111 kb on + strand, within GFF2104at 149.113 kb on + strand, within GFF2104at 149.128 kb on + strand, within GFF2104at 149.128 kb on + strand, within GFF2104at 149.128 kb on + strand, within GFF2104at 149.147 kb on + strand, within GFF2104at 149.147 kb on + strand, within GFF2104at 149.178 kb on + strand, within GFF2104at 149.179 kb on - strand, within GFF2104at 149.198 kb on + strand, within GFF2104at 149.198 kb on + strand, within GFF2104at 149.198 kb on + strand, within GFF2104at 149.199 kb on - strand, within GFF2104at 149.200 kb on + strand, within GFF2104at 149.200 kb on + strand, within GFF2104at 149.200 kb on + strand, within GFF2104at 149.200 kb on + strand, within GFF2104at 149.200 kb on + strand, within GFF2104at 149.218 kb on + strand, within GFF2104at 149.244 kb on + strand, within GFF2104at 149.244 kb on + strand, within GFF2104at 149.252 kb on + strand, within GFF2104at 149.252 kb on + strand, within GFF2104at 149.252 kb on + strand, within GFF2104at 149.252 kb on + strand, within GFF2104at 149.252 kb on + strand, within GFF2104at 149.253 kb on - strand, within GFF2104at 149.253 kb on - strand, within GFF2104at 149.350 kb on + strand, within GFF2104at 149.350 kb on + strand, within GFF2104at 149.360 kb on - strand, within GFF2104at 149.360 kb on - strand, within GFF2104at 149.374 kb on + strandat 149.375 kb on - strandat 149.442 kb on + strandat 149.443 kb on - strandat 149.537 kb on + strandat 149.538 kb on - strandat 149.589 kb on - strand, within GFF2105at 149.600 kb on + strand, within GFF2105at 149.709 kb on - strand, within GFF2105at 149.709 kb on - strand, within GFF2105at 149.883 kb on - strand, within GFF2105at 149.984 kb on - strand, within GFF2105at 149.985 kb on + strand, within GFF2105at 149.986 kb on - strand, within GFF2105at 149.986 kb on - strand, within GFF2105at 149.986 kb on - strand, within GFF2105at 149.986 kb on - strand, within GFF2105at 150.078 kb on - strand, within GFF2105at 150.309 kb on - strand, within GFF2105at 150.349 kb on + strand, within GFF2105at 150.606 kb on - strand, within GFF2105at 150.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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148,495 + GFF2103 0.20 +0.1
148,495 + GFF2103 0.20 -2.1
148,495 + GFF2103 0.20 +1.3
148,495 + GFF2103 0.20 -0.2
148,495 + GFF2103 0.20 -1.0
148,495 + GFF2103 0.20 -1.2
148,501 + GFF2103 0.21 +0.1
148,501 + GFF2103 0.21 -1.0
148,501 + GFF2103 0.21 +0.3
148,502 - GFF2103 0.22 -0.5
148,503 + GFF2103 0.22 -1.2
148,503 + GFF2103 0.22 -0.6
148,534 + GFF2103 0.29 +1.1
148,534 + GFF2103 0.29 -2.1
148,535 - GFF2103 0.29 -0.5
148,552 - GFF2103 0.33 +1.1
148,593 + GFF2103 0.43 +0.1
148,599 + GFF2103 0.44 -0.3
148,600 - GFF2103 0.44 -0.2
148,629 + GFF2103 0.51 -0.5
148,629 + GFF2103 0.51 -0.9
148,701 + GFF2103 0.67 +0.2
148,702 - GFF2103 0.68 +0.1
148,725 + GFF2103 0.73 -1.0
148,730 + GFF2103 0.74 +0.1
148,730 + GFF2103 0.74 -0.9
148,730 + GFF2103 0.74 -0.4
148,731 - GFF2103 0.74 +0.1
148,761 + GFF2103 0.81 +0.8
148,803 + +0.1
148,810 + -1.5
148,810 + -0.6
148,810 + -0.7
148,811 - -0.9
148,833 + -0.0
148,840 + -0.4
148,840 + -1.5
148,851 + -1.1
148,851 + -1.2
148,851 + +0.3
148,851 + -1.1
148,851 + -1.2
148,851 + +0.2
148,852 - -1.2
148,856 + +0.8
148,856 + -1.0
148,875 + -2.2
148,913 + GFF2104 0.11 -0.2
148,922 + GFF2104 0.13 -2.2
148,922 + GFF2104 0.13 -0.5
148,925 - GFF2104 0.13 -0.0
148,950 + GFF2104 0.18 +0.4
148,951 - GFF2104 0.18 -1.1
148,961 + GFF2104 0.19 -1.3
148,962 - GFF2104 0.20 -0.9
148,971 - GFF2104 0.21 +0.1
149,014 + GFF2104 0.29 -0.2
149,014 + GFF2104 0.29 -0.5
149,014 + GFF2104 0.29 -0.7
149,014 + GFF2104 0.29 -0.1
149,041 + GFF2104 0.33 -0.9
149,041 + GFF2104 0.33 -1.1
149,081 + GFF2104 0.40 -0.2
149,089 + GFF2104 0.41 -1.5
149,111 + GFF2104 0.45 -1.2
149,111 + GFF2104 0.45 -0.1
149,113 + GFF2104 0.45 -0.4
149,128 + GFF2104 0.48 -1.1
149,128 + GFF2104 0.48 -1.4
149,128 + GFF2104 0.48 +0.2
149,147 + GFF2104 0.51 -1.4
149,147 + GFF2104 0.51 -2.2
149,178 + GFF2104 0.57 -0.2
149,179 - GFF2104 0.57 -0.9
149,198 + GFF2104 0.60 -1.5
149,198 + GFF2104 0.60 +0.2
149,198 + GFF2104 0.60 -0.8
149,199 - GFF2104 0.60 -0.9
149,200 + GFF2104 0.60 +1.2
149,200 + GFF2104 0.60 -0.2
149,200 + GFF2104 0.60 +0.3
149,200 + GFF2104 0.60 -1.0
149,200 + GFF2104 0.60 -0.1
149,218 + GFF2104 0.63 +0.9
149,244 + GFF2104 0.68 +0.4
149,244 + GFF2104 0.68 -0.4
149,252 + GFF2104 0.69 -0.5
149,252 + GFF2104 0.69 +0.1
149,252 + GFF2104 0.69 -0.3
149,252 + GFF2104 0.69 -1.1
149,252 + GFF2104 0.69 -0.9
149,253 - GFF2104 0.69 +0.7
149,253 - GFF2104 0.69 +0.3
149,350 + GFF2104 0.86 -0.2
149,350 + GFF2104 0.86 -0.2
149,360 - GFF2104 0.88 -1.1
149,360 - GFF2104 0.88 +1.3
149,374 + -0.7
149,375 - +0.1
149,442 + -0.4
149,443 - -0.3
149,537 + -1.2
149,538 - -0.9
149,589 - GFF2105 0.11 -0.9
149,600 + GFF2105 0.12 -0.2
149,709 - GFF2105 0.20 -1.2
149,709 - GFF2105 0.20 -1.2
149,883 - GFF2105 0.33 -0.9
149,984 - GFF2105 0.40 +0.3
149,985 + GFF2105 0.40 -0.9
149,986 - GFF2105 0.40 -1.2
149,986 - GFF2105 0.40 -0.9
149,986 - GFF2105 0.40 -1.2
149,986 - GFF2105 0.40 +0.3
150,078 - GFF2105 0.47 -0.9
150,309 - GFF2105 0.64 -1.2
150,349 + GFF2105 0.67 -0.9
150,606 - GFF2105 0.86 -0.9
150,766 + +0.5

Or see this region's nucleotide sequence