Strain Fitness in Methylophilus sp. DMC18 around GFF2034

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2032 and GFF2033 are separated by 12 nucleotidesGFF2033 and GFF2034 overlap by 10 nucleotidesGFF2034 and GFF2035 are separated by 2 nucleotides GFF2032 - Hydrogen peroxide-inducible genes activator, at 74,242 to 75,147 GFF2032 GFF2033 - hypothetical protein, at 75,160 to 76,005 GFF2033 GFF2034 - Ribosomal protein L11 methyltransferase, at 75,996 to 76,898 GFF2034 GFF2035 - Biotin carboxylase, at 76,901 to 78,250 GFF2035 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 75.016 kb on - strand, within GFF2032at 75.039 kb on + strand, within GFF2032at 75.039 kb on + strand, within GFF2032at 75.039 kb on + strand, within GFF2032at 75.040 kb on - strand, within GFF2032at 75.040 kb on - strand, within GFF2032at 75.040 kb on - strand, within GFF2032at 75.040 kb on - strand, within GFF2032at 75.040 kb on - strand, within GFF2032at 75.040 kb on - strand, within GFF2032at 75.089 kb on + strandat 75.093 kb on - strandat 75.145 kb on + strandat 75.146 kb on - strandat 75.161 kb on + strandat 75.161 kb on + strandat 75.161 kb on + strandat 75.162 kb on - strandat 75.162 kb on - strandat 75.162 kb on - strandat 75.162 kb on - strandat 75.164 kb on + strandat 75.164 kb on + strandat 75.164 kb on + strandat 75.164 kb on + strandat 75.165 kb on - strandat 75.165 kb on - strandat 75.165 kb on - strandat 75.206 kb on - strandat 75.206 kb on - strandat 75.211 kb on + strandat 75.211 kb on + strandat 75.211 kb on + strandat 75.211 kb on + strandat 75.211 kb on + strandat 75.212 kb on - strandat 75.212 kb on - strandat 75.212 kb on - strandat 75.212 kb on - strandat 75.212 kb on - strandat 75.212 kb on - strandat 75.281 kb on + strand, within GFF2033at 75.282 kb on - strand, within GFF2033at 75.282 kb on - strand, within GFF2033at 75.282 kb on - strand, within GFF2033at 75.282 kb on - strand, within GFF2033at 75.282 kb on - strand, within GFF2033at 75.310 kb on + strand, within GFF2033at 75.327 kb on + strand, within GFF2033at 75.346 kb on + strand, within GFF2033at 75.347 kb on - strand, within GFF2033at 75.435 kb on + strand, within GFF2033at 75.436 kb on - strand, within GFF2033at 75.448 kb on + strand, within GFF2033at 75.448 kb on + strand, within GFF2033at 75.448 kb on + strand, within GFF2033at 75.448 kb on + strand, within GFF2033at 75.448 kb on + strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.449 kb on - strand, within GFF2033at 75.465 kb on + strand, within GFF2033at 75.466 kb on - strand, within GFF2033at 75.566 kb on + strand, within GFF2033at 75.566 kb on + strand, within GFF2033at 75.567 kb on - strand, within GFF2033at 75.567 kb on - strand, within GFF2033at 75.567 kb on - strand, within GFF2033at 75.567 kb on - strand, within GFF2033at 75.567 kb on - strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.615 kb on + strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.616 kb on - strand, within GFF2033at 75.617 kb on + strand, within GFF2033at 75.617 kb on + strand, within GFF2033at 75.617 kb on + strand, within GFF2033at 75.617 kb on + strand, within GFF2033at 75.617 kb on + strand, within GFF2033at 75.617 kb on + strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.618 kb on - strand, within GFF2033at 75.727 kb on - strand, within GFF2033at 75.727 kb on - strand, within GFF2033at 75.727 kb on - strand, within GFF2033at 75.727 kb on - strand, within GFF2033at 75.807 kb on - strand, within GFF2033at 75.838 kb on + strand, within GFF2033at 75.838 kb on + strand, within GFF2033at 75.839 kb on - strand, within GFF2033at 75.839 kb on - strand, within GFF2033at 75.935 kb on + strandat 75.935 kb on + strandat 75.935 kb on + strandat 75.936 kb on - strandat 76.076 kb on - strandat 76.076 kb on - strandat 76.076 kb on - strandat 76.076 kb on - strandat 76.076 kb on - strandat 76.111 kb on - strand, within GFF2034at 76.111 kb on - strand, within GFF2034at 76.111 kb on - strand, within GFF2034at 76.111 kb on - strand, within GFF2034at 76.111 kb on - strand, within GFF2034at 76.111 kb on - strand, within GFF2034at 76.120 kb on - strand, within GFF2034at 76.120 kb on - strand, within GFF2034at 76.131 kb on - strand, within GFF2034at 76.193 kb on + strand, within GFF2034at 76.194 kb on - strand, within GFF2034at 76.194 kb on - strand, within GFF2034at 76.194 kb on - strand, within GFF2034at 76.228 kb on + strand, within GFF2034at 76.228 kb on + strand, within GFF2034at 76.228 kb on + strand, within GFF2034at 76.229 kb on - strand, within GFF2034at 76.243 kb on + strand, within GFF2034at 76.265 kb on + strand, within GFF2034at 76.311 kb on - strand, within GFF2034at 76.419 kb on + strand, within GFF2034at 76.419 kb on + strand, within GFF2034at 76.499 kb on + strand, within GFF2034at 76.500 kb on - strand, within GFF2034at 76.500 kb on - strand, within GFF2034at 76.500 kb on - strand, within GFF2034at 76.553 kb on + strand, within GFF2034at 76.554 kb on - strand, within GFF2034at 76.554 kb on - strand, within GFF2034at 76.624 kb on - strand, within GFF2034at 76.624 kb on - strand, within GFF2034at 76.630 kb on + strand, within GFF2034at 76.630 kb on + strand, within GFF2034at 76.631 kb on - strand, within GFF2034at 76.631 kb on - strand, within GFF2034at 76.631 kb on - strand, within GFF2034at 76.631 kb on - strand, within GFF2034at 76.675 kb on - strand, within GFF2034at 76.675 kb on - strand, within GFF2034at 76.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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75,016 - GFF2032 0.85 -0.9
75,039 + GFF2032 0.88 -0.1
75,039 + GFF2032 0.88 -0.4
75,039 + GFF2032 0.88 -0.8
75,040 - GFF2032 0.88 -0.5
75,040 - GFF2032 0.88 -2.1
75,040 - GFF2032 0.88 -1.0
75,040 - GFF2032 0.88 -1.2
75,040 - GFF2032 0.88 -1.2
75,040 - GFF2032 0.88 -0.1
75,089 + -1.9
75,093 - -0.2
75,145 + -0.5
75,146 - +0.1
75,161 + -1.5
75,161 + -1.1
75,161 + -1.1
75,162 - +0.1
75,162 - +0.7
75,162 - -1.4
75,162 - +1.1
75,164 + -1.4
75,164 + +0.1
75,164 + -0.7
75,164 + -0.0
75,165 - -0.9
75,165 - -0.8
75,165 - -0.5
75,206 - +0.5
75,206 - +0.6
75,211 + -0.4
75,211 + -0.7
75,211 + +1.4
75,211 + +0.1
75,211 + -0.1
75,212 - +0.7
75,212 - -0.9
75,212 - +0.3
75,212 - -1.2
75,212 - -0.9
75,212 - -0.7
75,281 + GFF2033 0.14 -0.9
75,282 - GFF2033 0.14 -0.5
75,282 - GFF2033 0.14 -0.1
75,282 - GFF2033 0.14 -1.2
75,282 - GFF2033 0.14 +0.1
75,282 - GFF2033 0.14 -0.5
75,310 + GFF2033 0.18 -1.1
75,327 + GFF2033 0.20 -0.1
75,346 + GFF2033 0.22 -0.6
75,347 - GFF2033 0.22 -0.7
75,435 + GFF2033 0.33 -0.8
75,436 - GFF2033 0.33 -1.1
75,448 + GFF2033 0.34 -0.9
75,448 + GFF2033 0.34 -0.9
75,448 + GFF2033 0.34 +0.2
75,448 + GFF2033 0.34 -0.8
75,448 + GFF2033 0.34 -1.6
75,449 - GFF2033 0.34 -1.1
75,449 - GFF2033 0.34 -0.9
75,449 - GFF2033 0.34 +0.3
75,449 - GFF2033 0.34 -1.1
75,449 - GFF2033 0.34 -0.3
75,449 - GFF2033 0.34 -1.4
75,449 - GFF2033 0.34 -0.4
75,465 + GFF2033 0.36 +1.4
75,466 - GFF2033 0.36 +0.8
75,566 + GFF2033 0.48 -0.9
75,566 + GFF2033 0.48 -0.6
75,567 - GFF2033 0.48 -0.3
75,567 - GFF2033 0.48 -0.8
75,567 - GFF2033 0.48 +0.1
75,567 - GFF2033 0.48 -0.9
75,567 - GFF2033 0.48 -0.4
75,615 + GFF2033 0.54 -0.7
75,615 + GFF2033 0.54 -1.3
75,615 + GFF2033 0.54 -0.8
75,615 + GFF2033 0.54 +0.5
75,615 + GFF2033 0.54 -1.2
75,615 + GFF2033 0.54 -1.6
75,615 + GFF2033 0.54 -1.2
75,616 - GFF2033 0.54 -0.7
75,616 - GFF2033 0.54 -1.7
75,616 - GFF2033 0.54 -1.3
75,616 - GFF2033 0.54 -2.1
75,616 - GFF2033 0.54 -1.2
75,616 - GFF2033 0.54 +0.2
75,616 - GFF2033 0.54 -0.7
75,616 - GFF2033 0.54 -0.9
75,616 - GFF2033 0.54 +0.5
75,616 - GFF2033 0.54 +0.5
75,617 + GFF2033 0.54 -1.9
75,617 + GFF2033 0.54 +0.3
75,617 + GFF2033 0.54 -0.8
75,617 + GFF2033 0.54 -1.0
75,617 + GFF2033 0.54 -0.7
75,617 + GFF2033 0.54 +0.4
75,618 - GFF2033 0.54 -1.4
75,618 - GFF2033 0.54 -0.4
75,618 - GFF2033 0.54 -0.5
75,618 - GFF2033 0.54 -0.5
75,618 - GFF2033 0.54 +0.7
75,618 - GFF2033 0.54 -0.3
75,618 - GFF2033 0.54 -0.9
75,618 - GFF2033 0.54 -0.4
75,618 - GFF2033 0.54 -0.9
75,618 - GFF2033 0.54 -0.9
75,618 - GFF2033 0.54 +0.3
75,727 - GFF2033 0.67 +0.1
75,727 - GFF2033 0.67 -0.6
75,727 - GFF2033 0.67 +1.3
75,727 - GFF2033 0.67 -0.4
75,807 - GFF2033 0.76 -1.5
75,838 + GFF2033 0.80 +0.6
75,838 + GFF2033 0.80 +0.0
75,839 - GFF2033 0.80 -0.3
75,839 - GFF2033 0.80 -0.6
75,935 + +0.4
75,935 + +0.9
75,935 + +0.8
75,936 - -2.2
76,076 - +0.7
76,076 - +0.5
76,076 - +0.8
76,076 - -0.9
76,076 - -0.1
76,111 - GFF2034 0.13 -0.8
76,111 - GFF2034 0.13 +0.8
76,111 - GFF2034 0.13 -0.3
76,111 - GFF2034 0.13 -0.9
76,111 - GFF2034 0.13 +1.4
76,111 - GFF2034 0.13 +0.6
76,120 - GFF2034 0.14 +0.7
76,120 - GFF2034 0.14 -0.8
76,131 - GFF2034 0.15 -0.8
76,193 + GFF2034 0.22 -0.9
76,194 - GFF2034 0.22 -0.7
76,194 - GFF2034 0.22 -0.6
76,194 - GFF2034 0.22 -0.8
76,228 + GFF2034 0.26 -0.6
76,228 + GFF2034 0.26 -0.7
76,228 + GFF2034 0.26 -0.4
76,229 - GFF2034 0.26 +0.1
76,243 + GFF2034 0.27 -2.2
76,265 + GFF2034 0.30 -2.0
76,311 - GFF2034 0.35 -0.2
76,419 + GFF2034 0.47 -0.7
76,419 + GFF2034 0.47 -0.2
76,499 + GFF2034 0.56 +1.1
76,500 - GFF2034 0.56 +0.4
76,500 - GFF2034 0.56 -0.4
76,500 - GFF2034 0.56 -0.7
76,553 + GFF2034 0.62 -0.1
76,554 - GFF2034 0.62 -0.9
76,554 - GFF2034 0.62 -0.9
76,624 - GFF2034 0.70 -0.7
76,624 - GFF2034 0.70 -0.8
76,630 + GFF2034 0.70 -0.4
76,630 + GFF2034 0.70 -0.6
76,631 - GFF2034 0.70 -1.5
76,631 - GFF2034 0.70 +0.5
76,631 - GFF2034 0.70 -0.5
76,631 - GFF2034 0.70 -0.1
76,675 - GFF2034 0.75 -0.1
76,675 - GFF2034 0.75 -1.4
76,885 - -0.9

Or see this region's nucleotide sequence