Strain Fitness in Methylophilus sp. DMC18 around GFF2027

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2026 and GFF2027 are separated by 277 nucleotidesGFF2027 and GFF2028 are separated by 16 nucleotides GFF2026 - hypothetical protein, at 64,818 to 66,173 GFF2026 GFF2027 - hypothetical protein, at 66,451 to 66,933 GFF2027 GFF2028 - Adenine DNA glycosylase, at 66,950 to 67,993 GFF2028 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 66.289 kb on - strandat 66.289 kb on - strandat 66.359 kb on - strandat 66.359 kb on - strandat 66.359 kb on - strandat 66.359 kb on - strandat 66.360 kb on + strandat 66.361 kb on - strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.377 kb on - strandat 66.377 kb on - strandat 66.398 kb on + strandat 66.422 kb on + strandat 66.423 kb on - strandat 66.470 kb on + strandat 66.470 kb on + strandat 66.470 kb on + strandat 66.471 kb on - strandat 66.471 kb on - strandat 66.474 kb on + strandat 66.475 kb on - strandat 66.475 kb on - strandat 66.475 kb on - strandat 66.475 kb on - strandat 66.540 kb on + strand, within GFF2027at 66.576 kb on + strand, within GFF2027at 66.576 kb on + strand, within GFF2027at 66.577 kb on - strand, within GFF2027at 66.577 kb on - strand, within GFF2027at 66.577 kb on - strand, within GFF2027at 66.671 kb on + strand, within GFF2027at 66.709 kb on + strand, within GFF2027at 66.711 kb on + strand, within GFF2027at 66.711 kb on + strand, within GFF2027at 66.711 kb on + strand, within GFF2027at 66.711 kb on + strand, within GFF2027at 66.711 kb on + strand, within GFF2027at 66.711 kb on + strand, within GFF2027at 66.712 kb on - strand, within GFF2027at 66.712 kb on - strand, within GFF2027at 66.734 kb on - strand, within GFF2027at 66.734 kb on - strand, within GFF2027at 66.783 kb on + strand, within GFF2027at 66.784 kb on - strand, within GFF2027at 66.788 kb on + strand, within GFF2027at 66.789 kb on - strand, within GFF2027at 66.789 kb on - strand, within GFF2027at 66.843 kb on + strand, within GFF2027at 66.843 kb on + strand, within GFF2027at 66.844 kb on - strand, within GFF2027at 66.844 kb on - strand, within GFF2027at 66.869 kb on + strand, within GFF2027at 66.869 kb on + strand, within GFF2027at 66.920 kb on + strandat 66.931 kb on + strandat 66.932 kb on - strandat 66.932 kb on - strandat 66.932 kb on - strandat 66.945 kb on - strandat 66.951 kb on + strandat 66.951 kb on + strandat 66.959 kb on + strandat 66.959 kb on + strandat 66.960 kb on - strandat 66.960 kb on - strandat 66.989 kb on + strandat 67.076 kb on + strand, within GFF2028at 67.076 kb on + strand, within GFF2028at 67.076 kb on + strand, within GFF2028at 67.076 kb on + strand, within GFF2028at 67.076 kb on + strand, within GFF2028at 67.077 kb on - strand, within GFF2028at 67.095 kb on - strand, within GFF2028at 67.114 kb on + strand, within GFF2028at 67.114 kb on + strand, within GFF2028at 67.115 kb on - strand, within GFF2028at 67.115 kb on - strand, within GFF2028at 67.115 kb on - strand, within GFF2028at 67.120 kb on + strand, within GFF2028at 67.120 kb on + strand, within GFF2028at 67.120 kb on + strand, within GFF2028at 67.120 kb on + strand, within GFF2028at 67.120 kb on + strand, within GFF2028at 67.172 kb on - strand, within GFF2028at 67.178 kb on + strand, within GFF2028at 67.178 kb on + strand, within GFF2028at 67.178 kb on + strand, within GFF2028at 67.178 kb on + strand, within GFF2028at 67.179 kb on - strand, within GFF2028at 67.179 kb on - strand, within GFF2028at 67.239 kb on - strand, within GFF2028at 67.239 kb on - strand, within GFF2028at 67.239 kb on - strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.240 kb on + strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.241 kb on - strand, within GFF2028at 67.296 kb on - strand, within GFF2028at 67.324 kb on + strand, within GFF2028at 67.325 kb on - strand, within GFF2028at 67.369 kb on - strand, within GFF2028at 67.417 kb on + strand, within GFF2028at 67.418 kb on - strand, within GFF2028at 67.423 kb on + strand, within GFF2028at 67.423 kb on + strand, within GFF2028at 67.461 kb on + strand, within GFF2028at 67.462 kb on - strand, within GFF2028at 67.462 kb on - strand, within GFF2028at 67.520 kb on + strand, within GFF2028at 67.520 kb on + strand, within GFF2028at 67.521 kb on - strand, within GFF2028at 67.521 kb on - strand, within GFF2028at 67.521 kb on - strand, within GFF2028at 67.521 kb on - strand, within GFF2028at 67.554 kb on + strand, within GFF2028at 67.555 kb on - strand, within GFF2028at 67.555 kb on - strand, within GFF2028at 67.555 kb on - strand, within GFF2028at 67.555 kb on - strand, within GFF2028at 67.568 kb on + strand, within GFF2028at 67.568 kb on + strand, within GFF2028at 67.569 kb on - strand, within GFF2028at 67.610 kb on - strand, within GFF2028at 67.658 kb on + strand, within GFF2028at 67.711 kb on + strand, within GFF2028at 67.712 kb on - strand, within GFF2028at 67.752 kb on + strand, within GFF2028at 67.752 kb on + strand, within GFF2028at 67.752 kb on + strand, within GFF2028at 67.752 kb on + strand, within GFF2028at 67.752 kb on + strand, within GFF2028at 67.752 kb on + strand, within GFF2028at 67.755 kb on + strand, within GFF2028at 67.755 kb on + strand, within GFF2028at 67.756 kb on - strand, within GFF2028at 67.805 kb on + strand, within GFF2028at 67.805 kb on + strand, within GFF2028at 67.806 kb on - strand, within GFF2028at 67.845 kb on + strand, within GFF2028at 67.845 kb on + strand, within GFF2028at 67.845 kb on + strand, within GFF2028at 67.845 kb on + strand, within GFF2028at 67.846 kb on - strand, within GFF2028at 67.846 kb on - strand, within GFF2028at 67.846 kb on - strand, within GFF2028at 67.846 kb on - strand, within GFF2028at 67.846 kb on - strand, within GFF2028at 67.848 kb on + strand, within GFF2028at 67.848 kb on + strand, within GFF2028at 67.848 kb on + strand, within GFF2028at 67.848 kb on + strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.849 kb on - strand, within GFF2028at 67.903 kb on + strandat 67.903 kb on + strandat 67.903 kb on + strandat 67.904 kb on - strandat 67.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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66,289 - -0.2
66,289 - -0.7
66,359 - +0.5
66,359 - -2.7
66,359 - -0.2
66,359 - -0.5
66,360 + -1.4
66,361 - -1.2
66,376 + -1.9
66,376 + -0.9
66,377 - +0.3
66,377 - -0.9
66,398 + -0.9
66,422 + -1.1
66,423 - -0.2
66,470 + -0.9
66,470 + -1.2
66,470 + -2.3
66,471 - -2.1
66,471 - -0.9
66,474 + -1.1
66,475 - -1.2
66,475 - -0.5
66,475 - -1.1
66,475 - -0.4
66,540 + GFF2027 0.18 +0.3
66,576 + GFF2027 0.26 -1.5
66,576 + GFF2027 0.26 -0.9
66,577 - GFF2027 0.26 -1.2
66,577 - GFF2027 0.26 -0.2
66,577 - GFF2027 0.26 -1.5
66,671 + GFF2027 0.46 -0.2
66,709 + GFF2027 0.53 -1.2
66,711 + GFF2027 0.54 -1.5
66,711 + GFF2027 0.54 -1.2
66,711 + GFF2027 0.54 -1.2
66,711 + GFF2027 0.54 -2.2
66,711 + GFF2027 0.54 +0.1
66,711 + GFF2027 0.54 -1.2
66,712 - GFF2027 0.54 -0.8
66,712 - GFF2027 0.54 -1.5
66,734 - GFF2027 0.59 -2.6
66,734 - GFF2027 0.59 -0.1
66,783 + GFF2027 0.69 -0.9
66,784 - GFF2027 0.69 -0.9
66,788 + GFF2027 0.70 -1.5
66,789 - GFF2027 0.70 -0.1
66,789 - GFF2027 0.70 +0.1
66,843 + GFF2027 0.81 -2.2
66,843 + GFF2027 0.81 -1.5
66,844 - GFF2027 0.81 -0.9
66,844 - GFF2027 0.81 -0.9
66,869 + GFF2027 0.87 -1.2
66,869 + GFF2027 0.87 -0.9
66,920 + -0.5
66,931 + -0.1
66,932 - -0.0
66,932 - -0.8
66,932 - -1.2
66,945 - -0.9
66,951 + -1.1
66,951 + -1.5
66,959 + -0.1
66,959 + -0.6
66,960 - +0.5
66,960 - -1.5
66,989 + -0.9
67,076 + GFF2028 0.12 -0.2
67,076 + GFF2028 0.12 -1.0
67,076 + GFF2028 0.12 +0.9
67,076 + GFF2028 0.12 +0.4
67,076 + GFF2028 0.12 -0.7
67,077 - GFF2028 0.12 -1.2
67,095 - GFF2028 0.14 -0.8
67,114 + GFF2028 0.16 +0.1
67,114 + GFF2028 0.16 +0.6
67,115 - GFF2028 0.16 +0.5
67,115 - GFF2028 0.16 -1.1
67,115 - GFF2028 0.16 -0.7
67,120 + GFF2028 0.16 -0.8
67,120 + GFF2028 0.16 -1.5
67,120 + GFF2028 0.16 -0.4
67,120 + GFF2028 0.16 +0.1
67,120 + GFF2028 0.16 +0.2
67,172 - GFF2028 0.21 -0.0
67,178 + GFF2028 0.22 -0.1
67,178 + GFF2028 0.22 +0.1
67,178 + GFF2028 0.22 -1.5
67,178 + GFF2028 0.22 -0.7
67,179 - GFF2028 0.22 -0.0
67,179 - GFF2028 0.22 +0.0
67,239 - GFF2028 0.28 -0.5
67,239 - GFF2028 0.28 -1.4
67,239 - GFF2028 0.28 +0.1
67,240 + GFF2028 0.28 +0.4
67,240 + GFF2028 0.28 -1.2
67,240 + GFF2028 0.28 +0.2
67,240 + GFF2028 0.28 -1.2
67,240 + GFF2028 0.28 +0.3
67,240 + GFF2028 0.28 -1.7
67,240 + GFF2028 0.28 -0.2
67,240 + GFF2028 0.28 -0.8
67,240 + GFF2028 0.28 -1.6
67,240 + GFF2028 0.28 -0.2
67,240 + GFF2028 0.28 +0.2
67,240 + GFF2028 0.28 +0.7
67,240 + GFF2028 0.28 -0.9
67,240 + GFF2028 0.28 -1.9
67,240 + GFF2028 0.28 -0.9
67,240 + GFF2028 0.28 +0.4
67,241 - GFF2028 0.28 +0.3
67,241 - GFF2028 0.28 -1.2
67,241 - GFF2028 0.28 +0.1
67,241 - GFF2028 0.28 +0.1
67,241 - GFF2028 0.28 -0.6
67,241 - GFF2028 0.28 -1.1
67,241 - GFF2028 0.28 -0.7
67,241 - GFF2028 0.28 -0.5
67,241 - GFF2028 0.28 +0.1
67,241 - GFF2028 0.28 -0.3
67,241 - GFF2028 0.28 -0.4
67,241 - GFF2028 0.28 -0.1
67,241 - GFF2028 0.28 -0.0
67,241 - GFF2028 0.28 -0.6
67,241 - GFF2028 0.28 -0.9
67,241 - GFF2028 0.28 -1.1
67,241 - GFF2028 0.28 +0.5
67,296 - GFF2028 0.33 -1.0
67,324 + GFF2028 0.36 +0.1
67,325 - GFF2028 0.36 -1.5
67,369 - GFF2028 0.40 +0.5
67,417 + GFF2028 0.45 +0.1
67,418 - GFF2028 0.45 +0.7
67,423 + GFF2028 0.45 -1.1
67,423 + GFF2028 0.45 -1.9
67,461 + GFF2028 0.49 -0.4
67,462 - GFF2028 0.49 -1.6
67,462 - GFF2028 0.49 +0.1
67,520 + GFF2028 0.55 -0.2
67,520 + GFF2028 0.55 -0.5
67,521 - GFF2028 0.55 -0.3
67,521 - GFF2028 0.55 -1.2
67,521 - GFF2028 0.55 -1.3
67,521 - GFF2028 0.55 -0.4
67,554 + GFF2028 0.58 +0.2
67,555 - GFF2028 0.58 -1.0
67,555 - GFF2028 0.58 +0.1
67,555 - GFF2028 0.58 -2.2
67,555 - GFF2028 0.58 -0.7
67,568 + GFF2028 0.59 -0.3
67,568 + GFF2028 0.59 -0.9
67,569 - GFF2028 0.59 +0.1
67,610 - GFF2028 0.63 -0.8
67,658 + GFF2028 0.68 +1.8
67,711 + GFF2028 0.73 -0.5
67,712 - GFF2028 0.73 -1.2
67,752 + GFF2028 0.77 -0.5
67,752 + GFF2028 0.77 -2.5
67,752 + GFF2028 0.77 +0.8
67,752 + GFF2028 0.77 -0.8
67,752 + GFF2028 0.77 +1.1
67,752 + GFF2028 0.77 -0.4
67,755 + GFF2028 0.77 -0.6
67,755 + GFF2028 0.77 -0.2
67,756 - GFF2028 0.77 +0.1
67,805 + GFF2028 0.82 +1.1
67,805 + GFF2028 0.82 -0.2
67,806 - GFF2028 0.82 -0.5
67,845 + GFF2028 0.86 +0.1
67,845 + GFF2028 0.86 -0.9
67,845 + GFF2028 0.86 +0.2
67,845 + GFF2028 0.86 -2.6
67,846 - GFF2028 0.86 -0.2
67,846 - GFF2028 0.86 -0.1
67,846 - GFF2028 0.86 -0.9
67,846 - GFF2028 0.86 -0.6
67,846 - GFF2028 0.86 -0.1
67,848 + GFF2028 0.86 +1.7
67,848 + GFF2028 0.86 +0.2
67,848 + GFF2028 0.86 -0.8
67,848 + GFF2028 0.86 +0.8
67,849 - GFF2028 0.86 -0.8
67,849 - GFF2028 0.86 -0.5
67,849 - GFF2028 0.86 -0.7
67,849 - GFF2028 0.86 -1.4
67,849 - GFF2028 0.86 -0.8
67,849 - GFF2028 0.86 +0.3
67,849 - GFF2028 0.86 -0.5
67,903 + +1.4
67,903 + -0.8
67,903 + +0.3
67,904 - -0.9
67,909 - -1.4

Or see this region's nucleotide sequence