Strain Fitness in Methylophilus sp. DMC18 around GFF197

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF196 and GFF197 are separated by 574 nucleotidesGFF197 and GFF198 are separated by 122 nucleotidesGFF198 and GFF199 are separated by 25 nucleotides GFF196 - Hydrogen peroxide-inducible genes activator, at 196,040 to 196,948 GFF196 GFF197 - hypothetical protein, at 197,523 to 197,768 GFF197 GFF198 - hypothetical protein, at 197,891 to 198,550 GFF198 GFF199 - Nitrite reductase (NADH) small subunit, at 198,576 to 198,938 GFF199 Position (kb) 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1at 196.589 kb on - strand, within GFF196at 196.589 kb on - strand, within GFF196at 196.611 kb on - strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.623 kb on + strand, within GFF196at 196.624 kb on - strand, within GFF196at 196.624 kb on - strand, within GFF196at 196.624 kb on - strand, within GFF196at 196.624 kb on - strand, within GFF196at 196.624 kb on - strand, within GFF196at 196.756 kb on + strand, within GFF196at 196.825 kb on - strand, within GFF196at 196.825 kb on - strand, within GFF196at 196.904 kb on - strandat 196.922 kb on + strandat 196.922 kb on + strandat 196.922 kb on + strandat 196.926 kb on + strandat 196.926 kb on + strandat 196.927 kb on - strandat 196.940 kb on + strandat 197.135 kb on + strandat 197.135 kb on + strandat 197.135 kb on + strandat 197.135 kb on + strandat 197.135 kb on + strandat 197.135 kb on + strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.136 kb on - strandat 197.215 kb on + strandat 197.216 kb on - strandat 197.216 kb on - strandat 197.251 kb on + strandat 197.251 kb on + strandat 197.252 kb on - strandat 197.283 kb on + strandat 197.283 kb on + strandat 197.284 kb on - strandat 197.321 kb on - strandat 197.333 kb on - strandat 197.335 kb on + strandat 197.352 kb on - strandat 197.374 kb on + strandat 197.378 kb on + strandat 197.388 kb on + strandat 197.388 kb on + strandat 197.389 kb on - strandat 197.389 kb on - strandat 197.431 kb on + strandat 197.432 kb on - strandat 197.432 kb on - strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.496 kb on - strandat 197.499 kb on + strandat 197.511 kb on + strandat 197.511 kb on + strandat 197.511 kb on + strandat 197.511 kb on + strandat 197.512 kb on - strandat 197.512 kb on - strandat 197.533 kb on + strandat 197.533 kb on + strandat 197.533 kb on + strandat 197.537 kb on + strandat 197.537 kb on + strandat 197.537 kb on + strandat 197.537 kb on + strandat 197.538 kb on - strandat 197.627 kb on + strand, within GFF197at 197.627 kb on + strand, within GFF197at 197.627 kb on + strand, within GFF197at 197.628 kb on - strand, within GFF197at 197.717 kb on + strand, within GFF197at 197.717 kb on + strand, within GFF197at 197.884 kb on + strandat 198.120 kb on + strand, within GFF198at 198.121 kb on - strand, within GFF198at 198.208 kb on + strand, within GFF198at 198.247 kb on + strand, within GFF198at 198.325 kb on - strand, within GFF198at 198.325 kb on - strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.353 kb on - strand, within GFF198at 198.353 kb on - strand, within GFF198at 198.385 kb on + strand, within GFF198at 198.415 kb on + strand, within GFF198at 198.592 kb on - strandat 198.592 kb on - strandat 198.667 kb on - strand, within GFF199at 198.685 kb on + strand, within GFF199at 198.685 kb on + strand, within GFF199at 198.686 kb on - strand, within GFF199

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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196,589 - GFF196 0.60 +0.4
196,589 - GFF196 0.60 -0.6
196,611 - GFF196 0.63 -1.1
196,623 + GFF196 0.64 +0.3
196,623 + GFF196 0.64 -1.4
196,623 + GFF196 0.64 -0.6
196,623 + GFF196 0.64 +1.0
196,623 + GFF196 0.64 -2.0
196,623 + GFF196 0.64 -2.6
196,623 + GFF196 0.64 -0.2
196,623 + GFF196 0.64 -0.7
196,623 + GFF196 0.64 -0.8
196,623 + GFF196 0.64 -0.2
196,623 + GFF196 0.64 -0.6
196,624 - GFF196 0.64 +0.3
196,624 - GFF196 0.64 -1.4
196,624 - GFF196 0.64 -1.0
196,624 - GFF196 0.64 -0.4
196,624 - GFF196 0.64 -0.8
196,756 + GFF196 0.79 +0.6
196,825 - GFF196 0.86 -0.3
196,825 - GFF196 0.86 -0.0
196,904 - -1.0
196,922 + -0.6
196,922 + -1.8
196,922 + -0.6
196,926 + -0.8
196,926 + -0.2
196,927 - +0.4
196,940 + -2.0
197,135 + -1.3
197,135 + -1.0
197,135 + -0.6
197,135 + -1.0
197,135 + -0.9
197,135 + -1.0
197,136 - -0.7
197,136 - -1.1
197,136 - -0.4
197,136 - -1.0
197,136 - -0.5
197,136 - -1.6
197,136 - -0.4
197,136 - +1.3
197,215 + +0.6
197,216 - +0.6
197,216 - +0.2
197,251 + -3.0
197,251 + -0.7
197,252 - -1.4
197,283 + -1.8
197,283 + -0.0
197,284 - -1.4
197,321 - -0.4
197,333 - -0.4
197,335 + -0.1
197,352 - -0.2
197,374 + +0.2
197,378 + -1.0
197,388 + -1.0
197,388 + -1.0
197,389 - -0.4
197,389 - +1.0
197,431 + -0.0
197,432 - -1.6
197,432 - -1.0
197,495 + -1.0
197,495 + +0.2
197,496 - -0.9
197,499 + -0.4
197,511 + -0.6
197,511 + -0.8
197,511 + +0.1
197,511 + -0.4
197,512 - +0.2
197,512 - -0.5
197,533 + -1.0
197,533 + -1.0
197,533 + -0.6
197,537 + -0.8
197,537 + -1.3
197,537 + -1.0
197,537 + -1.4
197,538 - +1.0
197,627 + GFF197 0.42 -2.9
197,627 + GFF197 0.42 -0.9
197,627 + GFF197 0.42 +0.2
197,628 - GFF197 0.43 -0.3
197,717 + GFF197 0.79 -1.0
197,717 + GFF197 0.79 -2.4
197,884 + -1.0
198,120 + GFF198 0.35 +1.0
198,121 - GFF198 0.35 +1.0
198,208 + GFF198 0.48 -1.0
198,247 + GFF198 0.54 -0.0
198,325 - GFF198 0.66 -1.2
198,325 - GFF198 0.66 -0.0
198,352 + GFF198 0.70 +0.6
198,352 + GFF198 0.70 -1.0
198,352 + GFF198 0.70 -0.3
198,352 + GFF198 0.70 +0.3
198,353 - GFF198 0.70 -0.8
198,353 - GFF198 0.70 -1.5
198,385 + GFF198 0.75 -1.0
198,415 + GFF198 0.79 +0.2
198,592 - -1.0
198,592 - -1.1
198,667 - GFF199 0.25 +0.0
198,685 + GFF199 0.30 -1.6
198,685 + GFF199 0.30 +0.1
198,686 - GFF199 0.30 +0.4

Or see this region's nucleotide sequence