Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1804 and GFF1805 are separated by 135 nucleotides GFF1805 and GFF1806 are separated by 173 nucleotides
GFF1804 - Carboxy-S-adenosyl-L-methionine synthase, at 445,939 to 446,616
GFF1804
GFF1805 - HTH-type transcriptional repressor ComR, at 446,752 to 447,321
GFF1805
GFF1806 - hypothetical protein, at 447,495 to 448,292
GFF1806
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 445.752 kb on + strand at 445.752 kb on + strand at 445.753 kb on - strand at 445.753 kb on - strand at 445.753 kb on - strand at 445.759 kb on + strand at 445.759 kb on + strand at 445.760 kb on - strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.761 kb on + strand at 445.762 kb on - strand at 445.762 kb on - strand at 445.762 kb on - strand at 445.762 kb on - strand at 445.762 kb on - strand at 445.762 kb on - strand at 445.762 kb on - strand at 445.799 kb on - strand at 445.802 kb on + strand at 445.803 kb on - strand at 445.822 kb on + strand at 445.822 kb on + strand at 445.822 kb on + strand at 445.822 kb on + strand at 445.822 kb on + strand at 445.825 kb on + strand at 445.825 kb on + strand at 445.825 kb on + strand at 445.826 kb on - strand at 445.828 kb on + strand at 445.828 kb on + strand at 445.829 kb on - strand at 445.829 kb on - strand at 445.829 kb on - strand at 445.829 kb on - strand at 445.829 kb on - strand at 445.830 kb on + strand at 445.830 kb on + strand at 445.830 kb on + strand at 445.831 kb on - strand at 445.831 kb on - strand at 445.887 kb on + strand at 445.887 kb on + strand at 445.888 kb on - strand at 445.888 kb on - strand at 445.898 kb on - strand at 445.898 kb on - strand at 445.903 kb on + strand at 445.904 kb on - strand at 445.910 kb on - strand at 445.940 kb on + strand at 445.941 kb on - strand at 445.985 kb on + strand at 445.985 kb on + strand at 445.985 kb on + strand at 445.986 kb on - strand at 445.986 kb on - strand at 445.986 kb on - strand at 446.004 kb on + strand at 446.064 kb on + strand, within GFF1804 at 446.065 kb on - strand, within GFF1804 at 446.070 kb on + strand, within GFF1804 at 446.104 kb on + strand, within GFF1804 at 446.105 kb on - strand, within GFF1804 at 446.105 kb on - strand, within GFF1804 at 446.105 kb on - strand, within GFF1804 at 446.146 kb on + strand, within GFF1804 at 446.146 kb on + strand, within GFF1804 at 446.146 kb on + strand, within GFF1804 at 446.146 kb on + strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.147 kb on - strand, within GFF1804 at 446.180 kb on + strand, within GFF1804 at 446.181 kb on - strand, within GFF1804 at 446.181 kb on - strand, within GFF1804 at 446.181 kb on - strand, within GFF1804 at 446.270 kb on - strand, within GFF1804 at 446.324 kb on + strand, within GFF1804 at 446.325 kb on - strand, within GFF1804 at 446.325 kb on - strand, within GFF1804 at 446.325 kb on - strand, within GFF1804 at 446.335 kb on + strand, within GFF1804 at 446.335 kb on + strand, within GFF1804 at 446.335 kb on + strand, within GFF1804 at 446.335 kb on + strand, within GFF1804 at 446.336 kb on - strand, within GFF1804 at 446.336 kb on - strand, within GFF1804 at 446.336 kb on - strand, within GFF1804 at 446.336 kb on - strand, within GFF1804 at 446.448 kb on + strand, within GFF1804 at 446.448 kb on + strand, within GFF1804 at 446.448 kb on + strand, within GFF1804 at 446.520 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.529 kb on + strand, within GFF1804 at 446.530 kb on - strand, within GFF1804 at 446.530 kb on - strand, within GFF1804 at 446.530 kb on - strand, within GFF1804 at 446.530 kb on - strand, within GFF1804 at 446.530 kb on - strand, within GFF1804 at 446.530 kb on - strand, within GFF1804 at 446.536 kb on + strand, within GFF1804 at 446.536 kb on + strand, within GFF1804 at 446.536 kb on + strand, within GFF1804 at 446.536 kb on + strand, within GFF1804 at 446.537 kb on - strand, within GFF1804 at 446.537 kb on - strand, within GFF1804 at 446.537 kb on - strand, within GFF1804 at 446.537 kb on - strand, within GFF1804 at 446.663 kb on + strand at 446.753 kb on + strand at 446.779 kb on + strand at 446.780 kb on - strand at 446.780 kb on - strand at 446.785 kb on - strand at 446.785 kb on - strand at 446.848 kb on + strand, within GFF1805 at 446.848 kb on + strand, within GFF1805 at 446.849 kb on - strand, within GFF1805 at 446.849 kb on - strand, within GFF1805 at 446.853 kb on + strand, within GFF1805 at 446.885 kb on - strand, within GFF1805 at 446.896 kb on + strand, within GFF1805 at 446.958 kb on + strand, within GFF1805 at 446.959 kb on - strand, within GFF1805 at 446.961 kb on - strand, within GFF1805 at 446.967 kb on + strand, within GFF1805 at 447.056 kb on - strand, within GFF1805 at 447.056 kb on - strand, within GFF1805 at 447.056 kb on - strand, within GFF1805 at 447.074 kb on - strand, within GFF1805 at 447.152 kb on + strand, within GFF1805 at 447.152 kb on + strand, within GFF1805 at 447.153 kb on - strand, within GFF1805 at 447.153 kb on - strand, within GFF1805 at 447.153 kb on - strand, within GFF1805 at 447.153 kb on - strand, within GFF1805 at 447.153 kb on - strand, within GFF1805 at 447.153 kb on - strand, within GFF1805 at 447.157 kb on - strand, within GFF1805 at 447.172 kb on - strand, within GFF1805 at 447.204 kb on - strand, within GFF1805 at 447.204 kb on - strand, within GFF1805 at 447.217 kb on - strand, within GFF1805 at 447.217 kb on - strand, within GFF1805 at 447.217 kb on - strand, within GFF1805 at 447.377 kb on + strand at 447.433 kb on + strand at 447.433 kb on + strand at 447.434 kb on - strand at 447.434 kb on - strand at 447.434 kb on - strand at 447.436 kb on + strand at 447.463 kb on - strand at 447.463 kb on - strand at 447.466 kb on + strand at 447.466 kb on + strand at 447.466 kb on + strand at 447.466 kb on + strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.467 kb on - strand at 447.510 kb on - strand at 447.561 kb on + strand at 447.561 kb on + strand at 447.574 kb on + strand at 447.635 kb on - strand, within GFF1806 at 447.648 kb on - strand, within GFF1806 at 447.712 kb on + strand, within GFF1806 at 447.713 kb on - strand, within GFF1806 at 447.740 kb on + strand, within GFF1806 at 447.740 kb on + strand, within GFF1806 at 447.741 kb on - strand, within GFF1806 at 447.741 kb on - strand, within GFF1806 at 447.741 kb on - strand, within GFF1806 at 447.741 kb on - strand, within GFF1806 at 447.746 kb on + strand, within GFF1806 at 447.746 kb on + strand, within GFF1806 at 447.747 kb on - strand, within GFF1806 at 447.747 kb on - strand, within GFF1806 at 447.747 kb on - strand, within GFF1806 at 447.750 kb on - strand, within GFF1806 at 447.785 kb on + strand, within GFF1806 at 447.785 kb on + strand, within GFF1806 at 447.806 kb on + strand, within GFF1806 at 447.933 kb on + strand, within GFF1806 at 447.934 kb on - strand, within GFF1806 at 447.934 kb on - strand, within GFF1806 at 447.934 kb on - strand, within GFF1806 at 447.935 kb on + strand, within GFF1806 at 447.936 kb on - strand, within GFF1806 at 447.961 kb on - strand, within GFF1806 at 447.971 kb on + strand, within GFF1806 at 447.971 kb on + strand, within GFF1806 at 447.972 kb on - strand, within GFF1806 at 447.978 kb on + strand, within GFF1806 at 447.978 kb on + strand, within GFF1806 at 447.978 kb on + strand, within GFF1806 at 447.978 kb on + strand, within GFF1806 at 447.978 kb on + strand, within GFF1806 at 447.979 kb on - strand, within GFF1806 at 447.979 kb on - strand, within GFF1806 at 447.979 kb on - strand, within GFF1806 at 447.979 kb on - strand, within GFF1806 at 448.045 kb on + strand, within GFF1806 at 448.046 kb on - strand, within GFF1806 at 448.046 kb on - strand, within GFF1806 at 448.088 kb on + strand, within GFF1806 at 448.089 kb on - strand, within GFF1806 at 448.185 kb on - strand, within GFF1806 at 448.203 kb on - strand, within GFF1806 at 448.265 kb on + strand at 448.266 kb on - strand at 448.266 kb on - strand at 448.281 kb on + strand at 448.290 kb on + strand at 448.290 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 445,752 + -1.7 445,752 + -0.0 445,753 - -0.7 445,753 - +0.3 445,753 - -0.3 445,759 + -0.0 445,759 + -0.4 445,760 - -1.6 445,761 + +1.6 445,761 + -0.1 445,761 + -0.1 445,761 + -1.8 445,761 + +0.3 445,761 + -0.4 445,761 + +0.1 445,761 + -0.3 445,761 + -0.7 445,762 - -0.1 445,762 - -0.4 445,762 - -1.2 445,762 - -1.7 445,762 - -0.9 445,762 - -1.6 445,762 - +0.1 445,799 - +0.6 445,802 + -0.0 445,803 - +1.0 445,822 + -0.4 445,822 + -0.2 445,822 + +0.8 445,822 + +0.6 445,822 + -0.6 445,825 + -0.6 445,825 + -0.7 445,825 + -0.8 445,826 - -0.4 445,828 + -0.6 445,828 + -0.2 445,829 - -0.3 445,829 - -0.2 445,829 - +0.1 445,829 - -1.6 445,829 - +0.7 445,830 + -0.9 445,830 + -1.4 445,830 + -1.3 445,831 - -0.6 445,831 - -1.3 445,887 + +0.6 445,887 + -0.5 445,888 - +0.1 445,888 - -0.1 445,898 - -1.0 445,898 - -0.4 445,903 + -0.2 445,904 - +0.1 445,910 - -2.8 445,940 + -0.0 445,941 - -0.7 445,985 + -2.3 445,985 + -0.0 445,985 + -2.1 445,986 - -1.3 445,986 - -0.4 445,986 - -1.5 446,004 + -0.6 446,064 + GFF1804 0.18 -1.3 446,065 - GFF1804 0.19 +0.1 446,070 + GFF1804 0.19 -0.3 446,104 + GFF1804 0.24 -0.6 446,105 - GFF1804 0.24 -0.6 446,105 - GFF1804 0.24 -0.6 446,105 - GFF1804 0.24 -1.7 446,146 + GFF1804 0.31 +0.2 446,146 + GFF1804 0.31 -0.6 446,146 + GFF1804 0.31 -1.6 446,146 + GFF1804 0.31 +1.2 446,147 - GFF1804 0.31 -0.2 446,147 - GFF1804 0.31 -0.9 446,147 - GFF1804 0.31 +0.5 446,147 - GFF1804 0.31 -0.6 446,147 - GFF1804 0.31 -0.2 446,147 - GFF1804 0.31 -1.0 446,147 - GFF1804 0.31 -0.2 446,180 + GFF1804 0.36 -0.1 446,181 - GFF1804 0.36 +1.2 446,181 - GFF1804 0.36 -1.0 446,181 - GFF1804 0.36 +0.4 446,270 - GFF1804 0.49 -0.6 446,324 + GFF1804 0.57 -1.2 446,325 - GFF1804 0.57 -0.5 446,325 - GFF1804 0.57 -0.6 446,325 - GFF1804 0.57 +0.5 446,335 + GFF1804 0.58 -1.0 446,335 + GFF1804 0.58 -0.3 446,335 + GFF1804 0.58 -0.4 446,335 + GFF1804 0.58 -0.0 446,336 - GFF1804 0.59 -0.3 446,336 - GFF1804 0.59 -1.8 446,336 - GFF1804 0.59 -1.8 446,336 - GFF1804 0.59 -0.6 446,448 + GFF1804 0.75 -0.2 446,448 + GFF1804 0.75 -0.5 446,448 + GFF1804 0.75 -0.3 446,520 + GFF1804 0.86 -0.2 446,529 + GFF1804 0.87 -0.6 446,529 + GFF1804 0.87 -0.2 446,529 + GFF1804 0.87 -0.5 446,529 + GFF1804 0.87 -1.2 446,529 + GFF1804 0.87 -1.0 446,529 + GFF1804 0.87 -0.3 446,529 + GFF1804 0.87 -0.8 446,530 - GFF1804 0.87 -0.5 446,530 - GFF1804 0.87 +0.1 446,530 - GFF1804 0.87 -1.0 446,530 - GFF1804 0.87 -1.3 446,530 - GFF1804 0.87 -0.3 446,530 - GFF1804 0.87 -1.4 446,536 + GFF1804 0.88 -0.5 446,536 + GFF1804 0.88 -0.6 446,536 + GFF1804 0.88 -0.3 446,536 + GFF1804 0.88 -0.9 446,537 - GFF1804 0.88 -1.6 446,537 - GFF1804 0.88 +0.7 446,537 - GFF1804 0.88 -0.6 446,537 - GFF1804 0.88 +0.2 446,663 + -1.1 446,753 + +0.3 446,779 + -0.0 446,780 - -1.2 446,780 - -0.8 446,785 - -0.0 446,785 - -0.9 446,848 + GFF1805 0.17 -0.3 446,848 + GFF1805 0.17 -0.3 446,849 - GFF1805 0.17 -1.0 446,849 - GFF1805 0.17 -1.6 446,853 + GFF1805 0.18 -1.3 446,885 - GFF1805 0.23 -1.6 446,896 + GFF1805 0.25 -1.6 446,958 + GFF1805 0.36 -1.3 446,959 - GFF1805 0.36 -1.0 446,961 - GFF1805 0.37 -2.3 446,967 + GFF1805 0.38 -0.0 447,056 - GFF1805 0.53 +0.2 447,056 - GFF1805 0.53 -1.8 447,056 - GFF1805 0.53 -0.0 447,074 - GFF1805 0.56 -0.2 447,152 + GFF1805 0.70 -1.0 447,152 + GFF1805 0.70 -0.6 447,153 - GFF1805 0.70 -1.5 447,153 - GFF1805 0.70 -1.0 447,153 - GFF1805 0.70 -1.3 447,153 - GFF1805 0.70 -1.5 447,153 - GFF1805 0.70 -1.2 447,153 - GFF1805 0.70 -1.2 447,157 - GFF1805 0.71 -0.8 447,172 - GFF1805 0.74 -1.8 447,204 - GFF1805 0.79 -1.3 447,204 - GFF1805 0.79 -0.6 447,217 - GFF1805 0.82 -0.5 447,217 - GFF1805 0.82 +1.0 447,217 - GFF1805 0.82 -1.3 447,377 + +0.5 447,433 + +0.6 447,433 + -0.6 447,434 - +1.3 447,434 - -0.5 447,434 - -1.0 447,436 + -1.6 447,463 - -0.5 447,463 - -0.1 447,466 + -1.4 447,466 + +0.7 447,466 + -1.9 447,466 + -0.7 447,467 - -0.0 447,467 - +0.4 447,467 - -0.4 447,467 - -0.8 447,467 - -0.0 447,467 - -0.4 447,467 - -0.0 447,467 - -1.0 447,510 - -0.7 447,561 + +0.3 447,561 + -1.2 447,574 + -1.0 447,635 - GFF1806 0.18 -1.0 447,648 - GFF1806 0.19 -0.6 447,712 + GFF1806 0.27 -0.7 447,713 - GFF1806 0.27 -0.1 447,740 + GFF1806 0.31 -0.6 447,740 + GFF1806 0.31 -0.0 447,741 - GFF1806 0.31 +0.5 447,741 - GFF1806 0.31 -1.8 447,741 - GFF1806 0.31 -0.2 447,741 - GFF1806 0.31 +1.0 447,746 + GFF1806 0.31 -2.2 447,746 + GFF1806 0.31 +0.6 447,747 - GFF1806 0.32 -0.8 447,747 - GFF1806 0.32 -1.0 447,747 - GFF1806 0.32 -1.0 447,750 - GFF1806 0.32 +0.1 447,785 + GFF1806 0.36 -0.2 447,785 + GFF1806 0.36 -1.3 447,806 + GFF1806 0.39 -0.0 447,933 + GFF1806 0.55 -0.8 447,934 - GFF1806 0.55 -0.1 447,934 - GFF1806 0.55 -0.5 447,934 - GFF1806 0.55 -0.8 447,935 + GFF1806 0.55 -2.3 447,936 - GFF1806 0.55 -1.0 447,961 - GFF1806 0.58 +0.5 447,971 + GFF1806 0.60 +0.2 447,971 + GFF1806 0.60 -1.6 447,972 - GFF1806 0.60 -0.7 447,978 + GFF1806 0.61 -0.4 447,978 + GFF1806 0.61 +0.3 447,978 + GFF1806 0.61 -2.9 447,978 + GFF1806 0.61 -0.7 447,978 + GFF1806 0.61 -0.6 447,979 - GFF1806 0.61 +0.7 447,979 - GFF1806 0.61 -1.0 447,979 - GFF1806 0.61 -0.7 447,979 - GFF1806 0.61 -1.2 448,045 + GFF1806 0.69 -0.7 448,046 - GFF1806 0.69 -2.3 448,046 - GFF1806 0.69 -0.2 448,088 + GFF1806 0.74 -0.2 448,089 - GFF1806 0.74 -0.2 448,185 - GFF1806 0.86 -0.7 448,203 - GFF1806 0.89 -0.0 448,265 + -1.6 448,266 - -1.3 448,266 - +0.7 448,281 + +0.3 448,290 + -0.2 448,290 + -0.4 448,312 + +0.7 448,312 + -0.4 448,312 + -0.4 448,312 + -0.1
Or see this region's nucleotide sequence