Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1725 and GFF1726 are separated by 83 nucleotides GFF1726 and GFF1727 are separated by 105 nucleotides GFF1727 and GFF1728 are separated by 2 nucleotides GFF1728 and GFF1729 are separated by 14 nucleotides
GFF1725 - ECF RNA polymerase sigma factor SigM, at 360,938 to 361,480
GFF1725
GFF1726 - Protein YiiM, at 361,564 to 362,211
GFF1726
GFF1727 - hypothetical protein, at 362,317 to 362,766
GFF1727
GFF1728 - Endonuclease III, at 362,769 to 363,428
GFF1728
GFF1729 - Ion-translocating oxidoreductase complex subunit B, at 363,443 to 364,171
GFF1729
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1 at 361.437 kb on + strand at 361.437 kb on + strand at 361.438 kb on - strand at 361.497 kb on + strand at 361.497 kb on + strand at 361.498 kb on - strand at 361.498 kb on - strand at 361.498 kb on - strand at 361.539 kb on + strand at 361.540 kb on - strand at 361.540 kb on - strand at 361.540 kb on - strand at 361.540 kb on - strand at 361.540 kb on - strand at 361.592 kb on + strand at 361.593 kb on - strand at 361.593 kb on - strand at 361.620 kb on + strand at 361.621 kb on - strand at 361.621 kb on - strand at 361.624 kb on + strand at 361.624 kb on + strand at 361.625 kb on - strand at 361.625 kb on - strand at 361.681 kb on + strand, within GFF1726 at 361.681 kb on + strand, within GFF1726 at 361.682 kb on - strand, within GFF1726 at 361.682 kb on - strand, within GFF1726 at 361.693 kb on + strand, within GFF1726 at 361.693 kb on + strand, within GFF1726 at 361.694 kb on - strand, within GFF1726 at 361.775 kb on + strand, within GFF1726 at 361.776 kb on - strand, within GFF1726 at 361.876 kb on + strand, within GFF1726 at 361.876 kb on + strand, within GFF1726 at 361.876 kb on + strand, within GFF1726 at 361.877 kb on - strand, within GFF1726 at 361.877 kb on - strand, within GFF1726 at 361.877 kb on - strand, within GFF1726 at 361.942 kb on + strand, within GFF1726 at 361.981 kb on - strand, within GFF1726 at 362.013 kb on - strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.033 kb on + strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.034 kb on - strand, within GFF1726 at 362.133 kb on + strand, within GFF1726 at 362.133 kb on + strand, within GFF1726 at 362.134 kb on - strand, within GFF1726 at 362.135 kb on + strand, within GFF1726 at 362.136 kb on - strand, within GFF1726 at 362.203 kb on + strand at 362.203 kb on + strand at 362.203 kb on + strand at 362.203 kb on + strand at 362.204 kb on - strand at 362.211 kb on + strand at 362.212 kb on - strand at 362.212 kb on - strand at 362.212 kb on - strand at 362.219 kb on + strand at 362.219 kb on + strand at 362.220 kb on - strand at 362.220 kb on - strand at 362.271 kb on + strand at 362.272 kb on - strand at 362.275 kb on - strand at 362.275 kb on - strand at 362.288 kb on + strand at 362.289 kb on - strand at 362.289 kb on - strand at 362.300 kb on + strand at 362.300 kb on + strand at 362.301 kb on - strand at 362.301 kb on - strand at 362.351 kb on - strand at 362.410 kb on - strand, within GFF1727 at 362.588 kb on + strand, within GFF1727 at 362.589 kb on - strand, within GFF1727 at 362.589 kb on - strand, within GFF1727 at 362.646 kb on + strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.647 kb on - strand, within GFF1727 at 362.823 kb on + strand at 362.824 kb on - strand at 362.853 kb on - strand, within GFF1728 at 362.873 kb on + strand, within GFF1728 at 362.873 kb on + strand, within GFF1728 at 362.873 kb on + strand, within GFF1728 at 362.874 kb on - strand, within GFF1728 at 362.874 kb on - strand, within GFF1728 at 362.874 kb on - strand, within GFF1728 at 362.876 kb on - strand, within GFF1728 at 362.924 kb on + strand, within GFF1728 at 362.961 kb on + strand, within GFF1728 at 362.962 kb on - strand, within GFF1728 at 362.962 kb on - strand, within GFF1728 at 362.962 kb on - strand, within GFF1728 at 363.006 kb on + strand, within GFF1728 at 363.007 kb on - strand, within GFF1728 at 363.007 kb on - strand, within GFF1728 at 363.137 kb on + strand, within GFF1728 at 363.137 kb on + strand, within GFF1728 at 363.184 kb on + strand, within GFF1728 at 363.184 kb on + strand, within GFF1728 at 363.184 kb on + strand, within GFF1728 at 363.185 kb on - strand, within GFF1728 at 363.192 kb on + strand, within GFF1728 at 363.204 kb on - strand, within GFF1728 at 363.205 kb on + strand, within GFF1728 at 363.345 kb on - strand, within GFF1728 at 363.345 kb on - strand, within GFF1728 at 363.345 kb on - strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.350 kb on + strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.351 kb on - strand, within GFF1728 at 363.352 kb on + strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.353 kb on - strand, within GFF1728 at 363.444 kb on + strand at 363.445 kb on - strand at 363.445 kb on - strand at 363.458 kb on - strand at 363.459 kb on - strand at 363.472 kb on + strand at 363.473 kb on - strand at 363.476 kb on - strand at 363.588 kb on + strand, within GFF1729 at 363.588 kb on + strand, within GFF1729 at 363.589 kb on - strand, within GFF1729 at 363.589 kb on - strand, within GFF1729 at 363.589 kb on - strand, within GFF1729 at 363.743 kb on + strand, within GFF1729 at 363.744 kb on - strand, within GFF1729
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 361,437 + -1.3 361,437 + -0.9 361,438 - +1.3 361,497 + -0.5 361,497 + -0.0 361,498 - -0.1 361,498 - -1.4 361,498 - -0.0 361,539 + +0.4 361,540 - -2.6 361,540 - -0.9 361,540 - -1.3 361,540 - -0.6 361,540 - -1.0 361,592 + -0.0 361,593 - -0.6 361,593 - -0.3 361,620 + -0.6 361,621 - -0.6 361,621 - -0.0 361,624 + -0.9 361,624 + -0.7 361,625 - -0.3 361,625 - -0.4 361,681 + GFF1726 0.18 -0.2 361,681 + GFF1726 0.18 -0.7 361,682 - GFF1726 0.18 -2.0 361,682 - GFF1726 0.18 +0.1 361,693 + GFF1726 0.20 -1.0 361,693 + GFF1726 0.20 -1.3 361,694 - GFF1726 0.20 +0.3 361,775 + GFF1726 0.33 -0.5 361,776 - GFF1726 0.33 -1.0 361,876 + GFF1726 0.48 -1.4 361,876 + GFF1726 0.48 -1.0 361,876 + GFF1726 0.48 +0.2 361,877 - GFF1726 0.48 +0.3 361,877 - GFF1726 0.48 -0.8 361,877 - GFF1726 0.48 -0.8 361,942 + GFF1726 0.58 -0.4 361,981 - GFF1726 0.64 -0.7 362,013 - GFF1726 0.69 -1.6 362,033 + GFF1726 0.72 -0.4 362,033 + GFF1726 0.72 -0.9 362,033 + GFF1726 0.72 -0.0 362,033 + GFF1726 0.72 -0.3 362,033 + GFF1726 0.72 -1.3 362,033 + GFF1726 0.72 -2.0 362,033 + GFF1726 0.72 -0.6 362,034 - GFF1726 0.73 +0.1 362,034 - GFF1726 0.73 -1.0 362,034 - GFF1726 0.73 -0.3 362,034 - GFF1726 0.73 -0.0 362,034 - GFF1726 0.73 -1.0 362,034 - GFF1726 0.73 -0.9 362,034 - GFF1726 0.73 +0.4 362,034 - GFF1726 0.73 +0.3 362,034 - GFF1726 0.73 +0.8 362,034 - GFF1726 0.73 -0.0 362,034 - GFF1726 0.73 -1.3 362,034 - GFF1726 0.73 +0.1 362,034 - GFF1726 0.73 -0.4 362,034 - GFF1726 0.73 -0.3 362,034 - GFF1726 0.73 -0.3 362,034 - GFF1726 0.73 -0.9 362,034 - GFF1726 0.73 -1.6 362,133 + GFF1726 0.88 +0.2 362,133 + GFF1726 0.88 -0.4 362,134 - GFF1726 0.88 -1.7 362,135 + GFF1726 0.88 +0.4 362,136 - GFF1726 0.88 -0.0 362,203 + +0.2 362,203 + -0.8 362,203 + +0.6 362,203 + -1.4 362,204 - -1.7 362,211 + +0.1 362,212 - -0.8 362,212 - -0.1 362,212 - -0.1 362,219 + -0.7 362,219 + -0.5 362,220 - +0.5 362,220 - -0.7 362,271 + +0.8 362,272 - -0.9 362,275 - -0.4 362,275 - -0.0 362,288 + -0.3 362,289 - -0.1 362,289 - -0.0 362,300 + -0.4 362,300 + -0.3 362,301 - -0.3 362,301 - +0.2 362,351 - -0.5 362,410 - GFF1727 0.21 -1.0 362,588 + GFF1727 0.60 -0.9 362,589 - GFF1727 0.60 -1.9 362,589 - GFF1727 0.60 -1.0 362,646 + GFF1727 0.73 -1.0 362,647 - GFF1727 0.73 -1.0 362,647 - GFF1727 0.73 -0.8 362,647 - GFF1727 0.73 -1.3 362,647 - GFF1727 0.73 -1.6 362,823 + -0.0 362,824 - -1.0 362,853 - GFF1728 0.13 -1.0 362,873 + GFF1728 0.16 -0.8 362,873 + GFF1728 0.16 -0.2 362,873 + GFF1728 0.16 -0.9 362,874 - GFF1728 0.16 -2.7 362,874 - GFF1728 0.16 -1.0 362,874 - GFF1728 0.16 +0.2 362,876 - GFF1728 0.16 -0.6 362,924 + GFF1728 0.23 -1.0 362,961 + GFF1728 0.29 -1.0 362,962 - GFF1728 0.29 -0.2 362,962 - GFF1728 0.29 -1.0 362,962 - GFF1728 0.29 -0.0 363,006 + GFF1728 0.36 +0.6 363,007 - GFF1728 0.36 +0.0 363,007 - GFF1728 0.36 -0.3 363,137 + GFF1728 0.56 -0.9 363,137 + GFF1728 0.56 -0.0 363,184 + GFF1728 0.63 -0.5 363,184 + GFF1728 0.63 -0.8 363,184 + GFF1728 0.63 -1.7 363,185 - GFF1728 0.63 -0.0 363,192 + GFF1728 0.64 -0.0 363,204 - GFF1728 0.66 -0.0 363,205 + GFF1728 0.66 -1.3 363,345 - GFF1728 0.87 +0.3 363,345 - GFF1728 0.87 -0.0 363,345 - GFF1728 0.87 +0.4 363,350 + GFF1728 0.88 -1.6 363,350 + GFF1728 0.88 -0.0 363,350 + GFF1728 0.88 -0.0 363,350 + GFF1728 0.88 -1.0 363,350 + GFF1728 0.88 -0.0 363,350 + GFF1728 0.88 -0.0 363,351 - GFF1728 0.88 +1.3 363,351 - GFF1728 0.88 -0.1 363,351 - GFF1728 0.88 -2.1 363,351 - GFF1728 0.88 -2.2 363,351 - GFF1728 0.88 -1.6 363,351 - GFF1728 0.88 -0.0 363,351 - GFF1728 0.88 +1.0 363,351 - GFF1728 0.88 +0.6 363,351 - GFF1728 0.88 -1.0 363,352 + GFF1728 0.88 -1.0 363,353 - GFF1728 0.88 +0.5 363,353 - GFF1728 0.88 -2.0 363,353 - GFF1728 0.88 -0.0 363,353 - GFF1728 0.88 +0.3 363,444 + -0.0 363,445 - -0.0 363,445 - -0.0 363,458 - +0.0 363,459 - -1.3 363,472 + -1.1 363,473 - -1.1 363,476 - -1.0 363,588 + GFF1729 0.20 -1.3 363,588 + GFF1729 0.20 +1.0 363,589 - GFF1729 0.20 +0.2 363,589 - GFF1729 0.20 -1.0 363,589 - GFF1729 0.20 +0.1 363,743 + GFF1729 0.41 +0.5 363,744 - GFF1729 0.41 -0.6
Or see this region's nucleotide sequence