Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1655 and GFF1656 are separated by 29 nucleotides GFF1656 and GFF1657 are separated by 151 nucleotides GFF1657 and GFF1658 are separated by 58 nucleotides GFF1658 and GFF1659 are separated by 96 nucleotides GFF1659 and GFF1660 are separated by 104 nucleotides
GFF1655 - putative signaling protein, at 288,560 to 290,164
GFF1655
GFF1656 - hypothetical protein, at 290,194 to 290,433
GFF1656
GFF1657 - hypothetical protein, at 290,585 to 290,803
GFF1657
GFF1658 - DNA polymerase I, at 290,862 to 293,627
GFF1658
GFF1659 - hypothetical protein, at 293,724 to 294,449
GFF1659
GFF1660 - hypothetical protein, at 294,554 to 294,898
GFF1660
Position (kb) 290
291
292
293
294 Strain fitness (log2 ratio) -2
-1
0
1 at 289.885 kb on + strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.885 kb on + strand, within GFF1655 at 289.886 kb on - strand, within GFF1655 at 290.032 kb on - strand at 290.038 kb on + strand at 290.038 kb on + strand at 290.038 kb on + strand at 290.038 kb on + strand at 290.039 kb on - strand at 290.039 kb on - strand at 290.039 kb on - strand at 290.041 kb on + strand at 290.041 kb on + strand at 290.041 kb on + strand at 290.041 kb on + strand at 290.042 kb on - strand at 290.042 kb on - strand at 290.042 kb on - strand at 290.042 kb on - strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.043 kb on + strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.044 kb on - strand at 290.048 kb on - strand at 290.065 kb on + strand at 290.066 kb on - strand at 290.092 kb on - strand at 290.092 kb on - strand at 290.117 kb on + strand at 290.117 kb on + strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.118 kb on - strand at 290.162 kb on + strand at 290.162 kb on + strand at 290.162 kb on + strand at 290.163 kb on - strand at 290.163 kb on - strand at 290.163 kb on - strand at 290.169 kb on + strand at 290.169 kb on + strand at 290.170 kb on - strand at 290.178 kb on - strand at 290.256 kb on + strand, within GFF1656 at 290.266 kb on + strand, within GFF1656 at 290.267 kb on - strand, within GFF1656 at 290.267 kb on - strand, within GFF1656 at 290.267 kb on - strand, within GFF1656 at 290.334 kb on + strand, within GFF1656 at 290.335 kb on - strand, within GFF1656 at 290.413 kb on + strand at 290.439 kb on + strand at 290.440 kb on - strand at 290.440 kb on - strand at 290.440 kb on - strand at 290.453 kb on + strand at 290.453 kb on + strand at 290.466 kb on + strand at 290.467 kb on - strand at 290.467 kb on - strand at 290.467 kb on - strand at 290.472 kb on - strand at 290.472 kb on - strand at 290.472 kb on - strand at 290.506 kb on + strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.557 kb on - strand at 290.690 kb on + strand, within GFF1657 at 290.690 kb on + strand, within GFF1657 at 290.727 kb on + strand, within GFF1657 at 290.727 kb on + strand, within GFF1657 at 290.731 kb on + strand, within GFF1657 at 290.731 kb on + strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.732 kb on - strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.774 kb on + strand, within GFF1657 at 290.775 kb on - strand, within GFF1657 at 290.775 kb on - strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.776 kb on + strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.777 kb on - strand, within GFF1657 at 290.783 kb on + strand at 290.820 kb on + strand at 290.837 kb on + strand at 290.837 kb on + strand at 290.838 kb on - strand at 290.838 kb on - strand at 290.846 kb on + strand at 290.846 kb on + strand at 290.847 kb on - strand at 290.864 kb on - strand at 290.905 kb on - strand at 290.905 kb on - strand at 290.920 kb on - strand at 291.151 kb on - strand, within GFF1658 at 291.151 kb on - strand, within GFF1658 at 291.209 kb on - strand, within GFF1658 at 291.810 kb on + strand, within GFF1658 at 291.811 kb on - strand, within GFF1658 at 292.306 kb on + strand, within GFF1658 at 292.307 kb on - strand, within GFF1658 at 292.307 kb on - strand, within GFF1658 at 292.307 kb on - strand, within GFF1658 at 292.307 kb on - strand, within GFF1658 at 292.501 kb on + strand, within GFF1658 at 292.502 kb on - strand, within GFF1658 at 292.502 kb on - strand, within GFF1658 at 292.658 kb on - strand, within GFF1658 at 292.682 kb on - strand, within GFF1658 at 292.704 kb on - strand, within GFF1658 at 292.774 kb on - strand, within GFF1658 at 293.687 kb on + strand at 293.688 kb on - strand at 293.688 kb on - strand at 293.688 kb on - strand at 293.688 kb on - strand at 293.692 kb on + strand at 293.692 kb on + strand at 293.692 kb on + strand at 293.745 kb on - strand at 293.907 kb on + strand, within GFF1659 at 293.908 kb on - strand, within GFF1659 at 293.910 kb on + strand, within GFF1659 at 293.910 kb on + strand, within GFF1659 at 293.910 kb on + strand, within GFF1659 at 293.957 kb on + strand, within GFF1659 at 293.957 kb on + strand, within GFF1659 at 293.957 kb on + strand, within GFF1659 at 293.958 kb on - strand, within GFF1659 at 294.044 kb on + strand, within GFF1659 at 294.044 kb on + strand, within GFF1659 at 294.079 kb on - strand, within GFF1659 at 294.113 kb on + strand, within GFF1659 at 294.134 kb on + strand, within GFF1659 at 294.135 kb on - strand, within GFF1659 at 294.135 kb on - strand, within GFF1659 at 294.138 kb on + strand, within GFF1659 at 294.139 kb on - strand, within GFF1659 at 294.139 kb on - strand, within GFF1659 at 294.158 kb on + strand, within GFF1659 at 294.159 kb on - strand, within GFF1659 at 294.203 kb on + strand, within GFF1659 at 294.203 kb on + strand, within GFF1659 at 294.204 kb on - strand, within GFF1659 at 294.243 kb on - strand, within GFF1659 at 294.277 kb on + strand, within GFF1659 at 294.277 kb on + strand, within GFF1659 at 294.278 kb on - strand, within GFF1659 at 294.293 kb on + strand, within GFF1659 at 294.294 kb on - strand, within GFF1659 at 294.390 kb on + strand at 294.391 kb on - strand at 294.441 kb on + strand at 294.441 kb on + strand at 294.441 kb on + strand at 294.442 kb on - strand at 294.442 kb on - strand at 294.472 kb on - strand at 294.475 kb on + strand at 294.475 kb on + strand at 294.476 kb on - strand at 294.483 kb on + strand at 294.484 kb on - strand at 294.522 kb on + strand at 294.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 289,885 + GFF1655 0.83 +0.6 289,885 + GFF1655 0.83 -1.2 289,885 + GFF1655 0.83 -0.0 289,885 + GFF1655 0.83 -1.5 289,886 - GFF1655 0.83 -1.0 290,032 - -0.0 290,038 + -0.6 290,038 + -1.8 290,038 + -1.0 290,038 + -1.3 290,039 - -2.2 290,039 - +0.1 290,039 - +0.2 290,041 + -2.2 290,041 + -1.6 290,041 + -0.3 290,041 + -1.3 290,042 - -0.6 290,042 - +0.1 290,042 - +0.6 290,042 - +0.3 290,043 + +0.4 290,043 + -0.5 290,043 + -0.3 290,043 + -0.8 290,043 + +1.5 290,043 + -1.1 290,043 + +0.6 290,043 + -0.6 290,043 + -0.6 290,043 + -0.6 290,043 + -2.2 290,043 + +0.1 290,044 - +0.7 290,044 - -1.6 290,044 - -1.6 290,044 - -0.0 290,044 - -0.6 290,044 - +0.3 290,044 - -2.2 290,044 - -0.6 290,044 - -0.2 290,044 - +1.0 290,044 - -0.5 290,044 - -0.6 290,048 - -0.2 290,065 + -0.3 290,066 - -1.6 290,092 - -1.0 290,092 - -1.0 290,117 + -0.9 290,117 + -1.3 290,118 - -1.2 290,118 - -1.3 290,118 - +0.1 290,118 - -0.9 290,118 - -1.0 290,118 - -0.6 290,162 + -1.6 290,162 + -0.8 290,162 + -0.7 290,163 - +0.4 290,163 - -0.1 290,163 - -0.1 290,169 + +0.7 290,169 + +0.2 290,170 - +0.4 290,178 - -0.9 290,256 + GFF1656 0.26 +0.6 290,266 + GFF1656 0.30 -0.0 290,267 - GFF1656 0.30 -0.3 290,267 - GFF1656 0.30 -0.0 290,267 - GFF1656 0.30 -0.9 290,334 + GFF1656 0.58 -0.0 290,335 - GFF1656 0.59 -0.8 290,413 + +0.5 290,439 + -1.2 290,440 - -1.8 290,440 - -0.4 290,440 - -1.7 290,453 + -0.6 290,453 + -1.9 290,466 + +0.5 290,467 - +0.4 290,467 - -0.0 290,467 - -1.3 290,472 - -0.9 290,472 - +0.8 290,472 - -1.3 290,506 + -1.4 290,557 - -0.2 290,557 - -2.2 290,557 - -0.4 290,557 - -1.0 290,557 - -1.2 290,690 + GFF1657 0.48 -1.0 290,690 + GFF1657 0.48 -1.2 290,727 + GFF1657 0.65 -1.3 290,727 + GFF1657 0.65 -0.0 290,731 + GFF1657 0.67 -0.2 290,731 + GFF1657 0.67 -2.0 290,732 - GFF1657 0.67 -2.2 290,732 - GFF1657 0.67 -0.3 290,732 - GFF1657 0.67 -0.6 290,732 - GFF1657 0.67 -1.0 290,774 + GFF1657 0.86 -1.4 290,774 + GFF1657 0.86 +0.2 290,774 + GFF1657 0.86 -0.8 290,774 + GFF1657 0.86 -1.0 290,774 + GFF1657 0.86 -0.0 290,775 - GFF1657 0.87 -1.3 290,775 - GFF1657 0.87 -0.4 290,776 + GFF1657 0.87 -0.7 290,776 + GFF1657 0.87 -1.5 290,776 + GFF1657 0.87 -0.8 290,776 + GFF1657 0.87 -1.0 290,776 + GFF1657 0.87 +0.5 290,777 - GFF1657 0.88 -0.8 290,777 - GFF1657 0.88 -0.6 290,777 - GFF1657 0.88 -0.8 290,777 - GFF1657 0.88 -1.4 290,777 - GFF1657 0.88 -1.2 290,777 - GFF1657 0.88 -1.3 290,777 - GFF1657 0.88 +0.6 290,777 - GFF1657 0.88 -1.7 290,777 - GFF1657 0.88 -0.5 290,777 - GFF1657 0.88 -1.0 290,783 + +0.7 290,820 + -0.7 290,837 + -1.0 290,837 + -0.5 290,838 - -1.0 290,838 - +0.2 290,846 + -0.2 290,846 + -0.0 290,847 - -0.6 290,864 - -0.3 290,905 - -0.2 290,905 - -1.3 290,920 - -2.5 291,151 - GFF1658 0.10 -1.3 291,151 - GFF1658 0.10 -1.0 291,209 - GFF1658 0.13 -0.3 291,810 + GFF1658 0.34 -1.0 291,811 - GFF1658 0.34 -1.6 292,306 + GFF1658 0.52 -1.0 292,307 - GFF1658 0.52 -0.0 292,307 - GFF1658 0.52 -1.7 292,307 - GFF1658 0.52 +0.6 292,307 - GFF1658 0.52 -1.7 292,501 + GFF1658 0.59 -1.0 292,502 - GFF1658 0.59 -1.0 292,502 - GFF1658 0.59 -1.6 292,658 - GFF1658 0.65 -0.6 292,682 - GFF1658 0.66 -0.2 292,704 - GFF1658 0.67 +1.3 292,774 - GFF1658 0.69 -0.8 293,687 + -0.2 293,688 - -1.9 293,688 - +1.0 293,688 - -0.3 293,688 - -0.0 293,692 + -1.0 293,692 + -1.0 293,692 + +0.1 293,745 - -2.0 293,907 + GFF1659 0.25 +0.1 293,908 - GFF1659 0.25 -0.8 293,910 + GFF1659 0.26 -2.2 293,910 + GFF1659 0.26 -1.7 293,910 + GFF1659 0.26 -0.6 293,957 + GFF1659 0.32 -1.4 293,957 + GFF1659 0.32 -0.2 293,957 + GFF1659 0.32 -0.9 293,958 - GFF1659 0.32 -0.7 294,044 + GFF1659 0.44 -1.2 294,044 + GFF1659 0.44 -1.1 294,079 - GFF1659 0.49 -0.2 294,113 + GFF1659 0.54 -0.5 294,134 + GFF1659 0.56 -0.0 294,135 - GFF1659 0.57 -1.0 294,135 - GFF1659 0.57 -0.2 294,138 + GFF1659 0.57 +0.4 294,139 - GFF1659 0.57 -1.6 294,139 - GFF1659 0.57 -0.2 294,158 + GFF1659 0.60 -0.4 294,159 - GFF1659 0.60 -0.0 294,203 + GFF1659 0.66 -0.8 294,203 + GFF1659 0.66 -2.7 294,204 - GFF1659 0.66 -1.3 294,243 - GFF1659 0.71 -0.0 294,277 + GFF1659 0.76 -0.0 294,277 + GFF1659 0.76 -0.3 294,278 - GFF1659 0.76 -0.9 294,293 + GFF1659 0.78 -1.3 294,294 - GFF1659 0.79 -1.2 294,390 + -1.6 294,391 - -0.3 294,441 + +0.3 294,441 + -1.0 294,441 + +0.0 294,442 - +1.3 294,442 - -0.9 294,472 - -1.3 294,475 + -1.0 294,475 + -0.3 294,476 - -0.3 294,483 + -0.0 294,484 - -0.1 294,522 + -1.3 294,522 + +0.4
Or see this region's nucleotide sequence