Strain Fitness in Methylophilus sp. DMC18 around GFF1650

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1649 and GFF1650 overlap by 4 nucleotidesGFF1650 and GFF1651 are separated by 111 nucleotides GFF1649 - Efflux pump membrane transporter BepE, at 280,353 to 283,520 GFF1649 GFF1650 - Outer membrane protein OprM, at 283,517 to 284,977 GFF1650 GFF1651 - Inner membrane metabolite transport protein YhjE, at 285,089 to 286,354 GFF1651 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1at 282.540 kb on + strand, within GFF1649at 282.597 kb on + strand, within GFF1649at 282.597 kb on + strand, within GFF1649at 282.598 kb on - strand, within GFF1649at 282.630 kb on + strand, within GFF1649at 282.630 kb on + strand, within GFF1649at 282.631 kb on - strand, within GFF1649at 282.650 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.727 kb on - strand, within GFF1649at 282.727 kb on - strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.731 kb on - strand, within GFF1649at 282.731 kb on - strand, within GFF1649at 282.767 kb on + strand, within GFF1649at 282.767 kb on + strand, within GFF1649at 282.767 kb on + strand, within GFF1649at 282.969 kb on + strand, within GFF1649at 283.155 kb on + strand, within GFF1649at 283.155 kb on + strand, within GFF1649at 283.334 kb on + strandat 283.345 kb on + strandat 283.454 kb on + strandat 283.614 kb on + strandat 283.614 kb on + strandat 283.616 kb on + strandat 283.616 kb on + strandat 283.616 kb on + strandat 283.617 kb on - strandat 283.617 kb on - strandat 283.618 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.750 kb on + strand, within GFF1650at 283.805 kb on + strand, within GFF1650at 283.805 kb on + strand, within GFF1650at 283.936 kb on + strand, within GFF1650at 283.937 kb on - strand, within GFF1650at 283.957 kb on + strand, within GFF1650at 284.030 kb on + strand, within GFF1650at 284.031 kb on - strand, within GFF1650at 284.046 kb on + strand, within GFF1650at 284.081 kb on + strand, within GFF1650at 284.082 kb on - strand, within GFF1650at 284.188 kb on + strand, within GFF1650at 284.223 kb on + strand, within GFF1650at 284.235 kb on + strand, within GFF1650at 284.310 kb on + strand, within GFF1650at 284.310 kb on + strand, within GFF1650at 284.337 kb on + strand, within GFF1650at 284.474 kb on + strand, within GFF1650at 284.586 kb on + strand, within GFF1650at 284.653 kb on + strand, within GFF1650at 284.653 kb on + strand, within GFF1650at 284.653 kb on + strand, within GFF1650at 284.654 kb on - strand, within GFF1650at 284.657 kb on + strand, within GFF1650at 284.779 kb on + strand, within GFF1650at 284.816 kb on + strand, within GFF1650at 284.817 kb on - strand, within GFF1650at 284.914 kb on + strandat 284.975 kb on + strandat 284.988 kb on + strandat 285.007 kb on - strandat 285.007 kb on - strandat 285.007 kb on - strandat 285.007 kb on - strandat 285.010 kb on + strandat 285.010 kb on + strandat 285.010 kb on + strandat 285.011 kb on - strandat 285.011 kb on - strandat 285.011 kb on - strandat 285.027 kb on - strandat 285.064 kb on - strandat 285.064 kb on - strandat 285.094 kb on + strandat 285.095 kb on - strandat 285.095 kb on - strandat 285.130 kb on + strandat 285.136 kb on + strandat 285.137 kb on - strandat 285.137 kb on - strandat 285.161 kb on + strandat 285.162 kb on - strandat 285.167 kb on + strandat 285.167 kb on + strandat 285.168 kb on - strandat 285.238 kb on - strand, within GFF1651at 285.238 kb on - strand, within GFF1651at 285.395 kb on + strand, within GFF1651at 285.395 kb on + strand, within GFF1651at 285.395 kb on + strand, within GFF1651at 285.395 kb on + strand, within GFF1651at 285.396 kb on - strand, within GFF1651at 285.396 kb on - strand, within GFF1651at 285.504 kb on - strand, within GFF1651at 285.514 kb on - strand, within GFF1651at 285.514 kb on - strand, within GFF1651at 285.684 kb on + strand, within GFF1651at 285.686 kb on + strand, within GFF1651at 285.686 kb on + strand, within GFF1651at 285.686 kb on + strand, within GFF1651at 285.687 kb on - strand, within GFF1651at 285.687 kb on - strand, within GFF1651at 285.687 kb on - strand, within GFF1651at 285.687 kb on - strand, within GFF1651at 285.827 kb on + strand, within GFF1651at 285.827 kb on + strand, within GFF1651at 285.828 kb on - strand, within GFF1651at 285.839 kb on + strand, within GFF1651at 285.840 kb on - strand, within GFF1651at 285.840 kb on - strand, within GFF1651at 285.866 kb on + strand, within GFF1651at 285.866 kb on + strand, within GFF1651at 285.867 kb on - strand, within GFF1651at 285.930 kb on + strand, within GFF1651at 285.931 kb on - strand, within GFF1651

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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282,540 + GFF1649 0.69 -2.3
282,597 + GFF1649 0.71 -1.8
282,597 + GFF1649 0.71 -1.3
282,598 - GFF1649 0.71 -1.0
282,630 + GFF1649 0.72 -1.5
282,630 + GFF1649 0.72 -0.4
282,631 - GFF1649 0.72 -1.8
282,650 + GFF1649 0.73 -1.2
282,726 + GFF1649 0.75 -1.0
282,726 + GFF1649 0.75 -1.0
282,726 + GFF1649 0.75 -0.0
282,726 + GFF1649 0.75 -1.6
282,726 + GFF1649 0.75 -0.7
282,726 + GFF1649 0.75 -0.0
282,727 - GFF1649 0.75 -1.8
282,727 - GFF1649 0.75 -1.6
282,730 + GFF1649 0.75 -2.3
282,730 + GFF1649 0.75 -1.2
282,730 + GFF1649 0.75 -0.0
282,730 + GFF1649 0.75 -1.2
282,730 + GFF1649 0.75 -0.5
282,730 + GFF1649 0.75 -0.6
282,730 + GFF1649 0.75 -0.3
282,730 + GFF1649 0.75 -2.3
282,731 - GFF1649 0.75 -0.6
282,731 - GFF1649 0.75 -0.6
282,767 + GFF1649 0.76 -1.3
282,767 + GFF1649 0.76 +0.2
282,767 + GFF1649 0.76 -0.4
282,969 + GFF1649 0.83 +0.7
283,155 + GFF1649 0.88 -0.6
283,155 + GFF1649 0.88 -0.5
283,334 + -1.0
283,345 + -1.2
283,454 + -0.0
283,614 + -0.5
283,614 + +0.6
283,616 + -0.1
283,616 + -1.0
283,616 + -1.0
283,617 - -1.3
283,617 - -0.8
283,618 + -1.1
283,649 + +0.3
283,649 + +0.6
283,649 + -1.6
283,649 + -1.0
283,649 + -2.2
283,649 + -0.0
283,750 + GFF1650 0.16 -1.6
283,805 + GFF1650 0.20 -0.8
283,805 + GFF1650 0.20 -1.0
283,936 + GFF1650 0.29 -1.0
283,937 - GFF1650 0.29 -1.0
283,957 + GFF1650 0.30 -1.6
284,030 + GFF1650 0.35 -1.2
284,031 - GFF1650 0.35 -1.0
284,046 + GFF1650 0.36 -1.8
284,081 + GFF1650 0.39 -0.3
284,082 - GFF1650 0.39 -2.5
284,188 + GFF1650 0.46 -1.2
284,223 + GFF1650 0.48 -1.0
284,235 + GFF1650 0.49 -0.6
284,310 + GFF1650 0.54 -0.4
284,310 + GFF1650 0.54 -1.3
284,337 + GFF1650 0.56 -1.1
284,474 + GFF1650 0.66 -0.6
284,586 + GFF1650 0.73 -1.6
284,653 + GFF1650 0.78 +0.3
284,653 + GFF1650 0.78 +0.5
284,653 + GFF1650 0.78 -2.0
284,654 - GFF1650 0.78 -1.0
284,657 + GFF1650 0.78 +0.2
284,779 + GFF1650 0.86 -0.0
284,816 + GFF1650 0.89 -1.2
284,817 - GFF1650 0.89 +0.4
284,914 + -1.8
284,975 + -0.4
284,988 + -0.4
285,007 - -2.4
285,007 - -0.9
285,007 - -0.3
285,007 - -0.3
285,010 + +0.3
285,010 + -1.2
285,010 + -0.0
285,011 - +0.6
285,011 - -1.0
285,011 - -0.4
285,027 - -1.1
285,064 - -0.6
285,064 - -1.0
285,094 + -3.0
285,095 - -0.6
285,095 - -0.5
285,130 + -0.9
285,136 + -0.2
285,137 - -1.0
285,137 - +0.2
285,161 + -0.9
285,162 - +1.0
285,167 + -1.3
285,167 + -1.6
285,168 - -1.8
285,238 - GFF1651 0.12 +0.4
285,238 - GFF1651 0.12 -0.6
285,395 + GFF1651 0.24 -0.0
285,395 + GFF1651 0.24 -0.8
285,395 + GFF1651 0.24 -1.8
285,395 + GFF1651 0.24 -1.8
285,396 - GFF1651 0.24 -1.8
285,396 - GFF1651 0.24 -1.3
285,504 - GFF1651 0.33 +0.5
285,514 - GFF1651 0.34 -2.5
285,514 - GFF1651 0.34 +0.6
285,684 + GFF1651 0.47 -2.6
285,686 + GFF1651 0.47 -1.0
285,686 + GFF1651 0.47 -0.0
285,686 + GFF1651 0.47 +0.2
285,687 - GFF1651 0.47 -0.8
285,687 - GFF1651 0.47 +0.4
285,687 - GFF1651 0.47 -1.3
285,687 - GFF1651 0.47 -1.3
285,827 + GFF1651 0.58 -1.4
285,827 + GFF1651 0.58 +1.3
285,828 - GFF1651 0.58 -0.8
285,839 + GFF1651 0.59 -1.0
285,840 - GFF1651 0.59 +0.6
285,840 - GFF1651 0.59 +0.5
285,866 + GFF1651 0.61 -2.3
285,866 + GFF1651 0.61 -1.3
285,867 - GFF1651 0.61 +0.6
285,930 + GFF1651 0.66 +0.2
285,931 - GFF1651 0.67 -1.0

Or see this region's nucleotide sequence