Strain Fitness in Methylophilus sp. DMC18 around GFF1649

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1648 and GFF1649 are separated by 52 nucleotidesGFF1649 and GFF1650 overlap by 4 nucleotides GFF1648 - Multidrug efflux pump subunit AcrA, at 279,122 to 280,300 GFF1648 GFF1649 - Efflux pump membrane transporter BepE, at 280,353 to 283,520 GFF1649 GFF1650 - Outer membrane protein OprM, at 283,517 to 284,977 GFF1650 Position (kb) 280 281 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1at 279.409 kb on + strand, within GFF1648at 279.409 kb on + strand, within GFF1648at 279.409 kb on + strand, within GFF1648at 279.447 kb on + strand, within GFF1648at 279.560 kb on + strand, within GFF1648at 279.565 kb on + strand, within GFF1648at 279.650 kb on + strand, within GFF1648at 279.650 kb on + strand, within GFF1648at 279.650 kb on + strand, within GFF1648at 279.651 kb on - strand, within GFF1648at 279.652 kb on + strand, within GFF1648at 279.652 kb on + strand, within GFF1648at 279.652 kb on + strand, within GFF1648at 279.652 kb on + strand, within GFF1648at 279.653 kb on - strand, within GFF1648at 279.653 kb on - strand, within GFF1648at 279.653 kb on - strand, within GFF1648at 279.653 kb on - strand, within GFF1648at 279.730 kb on + strand, within GFF1648at 279.730 kb on + strand, within GFF1648at 279.730 kb on + strand, within GFF1648at 279.750 kb on + strand, within GFF1648at 279.750 kb on + strand, within GFF1648at 279.750 kb on + strand, within GFF1648at 279.751 kb on - strand, within GFF1648at 279.843 kb on + strand, within GFF1648at 279.843 kb on + strand, within GFF1648at 279.843 kb on + strand, within GFF1648at 279.843 kb on + strand, within GFF1648at 279.843 kb on + strand, within GFF1648at 279.844 kb on - strand, within GFF1648at 279.844 kb on - strand, within GFF1648at 279.844 kb on - strand, within GFF1648at 279.844 kb on - strand, within GFF1648at 279.844 kb on - strand, within GFF1648at 279.862 kb on + strand, within GFF1648at 279.862 kb on + strand, within GFF1648at 279.863 kb on - strand, within GFF1648at 279.865 kb on + strand, within GFF1648at 280.096 kb on + strand, within GFF1648at 280.096 kb on + strand, within GFF1648at 280.097 kb on - strand, within GFF1648at 280.298 kb on + strandat 280.298 kb on + strandat 280.323 kb on + strandat 280.332 kb on + strandat 280.332 kb on + strandat 280.332 kb on + strandat 280.332 kb on + strandat 280.333 kb on - strandat 280.337 kb on + strandat 280.356 kb on + strandat 280.356 kb on + strandat 280.356 kb on + strandat 280.357 kb on - strandat 280.382 kb on + strandat 280.430 kb on + strandat 280.431 kb on - strandat 280.588 kb on + strandat 280.588 kb on + strandat 280.588 kb on + strandat 280.588 kb on + strandat 280.589 kb on - strandat 280.611 kb on + strandat 280.611 kb on + strandat 280.616 kb on + strandat 280.622 kb on + strandat 280.622 kb on + strandat 280.622 kb on + strandat 280.640 kb on + strandat 280.658 kb on + strandat 280.747 kb on + strand, within GFF1649at 280.747 kb on + strand, within GFF1649at 280.847 kb on + strand, within GFF1649at 280.847 kb on + strand, within GFF1649at 280.851 kb on + strand, within GFF1649at 280.857 kb on - strand, within GFF1649at 280.934 kb on + strand, within GFF1649at 280.934 kb on + strand, within GFF1649at 280.934 kb on + strand, within GFF1649at 280.934 kb on + strand, within GFF1649at 280.934 kb on + strand, within GFF1649at 280.935 kb on - strand, within GFF1649at 280.935 kb on - strand, within GFF1649at 280.935 kb on - strand, within GFF1649at 280.935 kb on - strand, within GFF1649at 280.982 kb on + strand, within GFF1649at 281.025 kb on + strand, within GFF1649at 281.026 kb on - strand, within GFF1649at 281.093 kb on + strand, within GFF1649at 281.094 kb on - strand, within GFF1649at 281.094 kb on - strand, within GFF1649at 281.132 kb on + strand, within GFF1649at 281.133 kb on - strand, within GFF1649at 281.208 kb on + strand, within GFF1649at 281.208 kb on + strand, within GFF1649at 281.208 kb on + strand, within GFF1649at 281.208 kb on + strand, within GFF1649at 281.211 kb on - strand, within GFF1649at 281.284 kb on + strand, within GFF1649at 281.352 kb on + strand, within GFF1649at 281.352 kb on + strand, within GFF1649at 281.411 kb on + strand, within GFF1649at 281.411 kb on + strand, within GFF1649at 281.411 kb on + strand, within GFF1649at 281.520 kb on - strand, within GFF1649at 281.520 kb on - strand, within GFF1649at 281.535 kb on + strand, within GFF1649at 281.535 kb on + strand, within GFF1649at 281.535 kb on + strand, within GFF1649at 281.535 kb on + strand, within GFF1649at 281.535 kb on + strand, within GFF1649at 281.535 kb on + strand, within GFF1649at 281.536 kb on - strand, within GFF1649at 281.681 kb on + strand, within GFF1649at 281.682 kb on - strand, within GFF1649at 281.682 kb on - strand, within GFF1649at 281.682 kb on - strand, within GFF1649at 281.722 kb on + strand, within GFF1649at 281.722 kb on + strand, within GFF1649at 281.860 kb on + strand, within GFF1649at 281.860 kb on + strand, within GFF1649at 281.860 kb on + strand, within GFF1649at 281.860 kb on + strand, within GFF1649at 281.860 kb on + strand, within GFF1649at 281.860 kb on + strand, within GFF1649at 281.949 kb on + strand, within GFF1649at 281.949 kb on + strand, within GFF1649at 281.950 kb on - strand, within GFF1649at 282.081 kb on + strand, within GFF1649at 282.082 kb on - strand, within GFF1649at 282.089 kb on + strand, within GFF1649at 282.089 kb on + strand, within GFF1649at 282.089 kb on + strand, within GFF1649at 282.322 kb on + strand, within GFF1649at 282.408 kb on + strand, within GFF1649at 282.408 kb on + strand, within GFF1649at 282.409 kb on - strand, within GFF1649at 282.409 kb on - strand, within GFF1649at 282.509 kb on + strand, within GFF1649at 282.540 kb on + strand, within GFF1649at 282.597 kb on + strand, within GFF1649at 282.597 kb on + strand, within GFF1649at 282.598 kb on - strand, within GFF1649at 282.630 kb on + strand, within GFF1649at 282.630 kb on + strand, within GFF1649at 282.631 kb on - strand, within GFF1649at 282.650 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.726 kb on + strand, within GFF1649at 282.727 kb on - strand, within GFF1649at 282.727 kb on - strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.730 kb on + strand, within GFF1649at 282.731 kb on - strand, within GFF1649at 282.731 kb on - strand, within GFF1649at 282.767 kb on + strand, within GFF1649at 282.767 kb on + strand, within GFF1649at 282.767 kb on + strand, within GFF1649at 282.969 kb on + strand, within GFF1649at 283.155 kb on + strand, within GFF1649at 283.155 kb on + strand, within GFF1649at 283.334 kb on + strandat 283.345 kb on + strandat 283.454 kb on + strandat 283.614 kb on + strandat 283.614 kb on + strandat 283.616 kb on + strandat 283.616 kb on + strandat 283.616 kb on + strandat 283.617 kb on - strandat 283.617 kb on - strandat 283.618 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.649 kb on + strandat 283.750 kb on + strand, within GFF1650at 283.805 kb on + strand, within GFF1650at 283.805 kb on + strand, within GFF1650at 283.936 kb on + strand, within GFF1650at 283.937 kb on - strand, within GFF1650at 283.957 kb on + strand, within GFF1650at 284.030 kb on + strand, within GFF1650at 284.031 kb on - strand, within GFF1650at 284.046 kb on + strand, within GFF1650at 284.081 kb on + strand, within GFF1650at 284.082 kb on - strand, within GFF1650at 284.188 kb on + strand, within GFF1650at 284.223 kb on + strand, within GFF1650at 284.235 kb on + strand, within GFF1650at 284.310 kb on + strand, within GFF1650at 284.310 kb on + strand, within GFF1650at 284.337 kb on + strand, within GFF1650at 284.474 kb on + strand, within GFF1650

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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279,409 + GFF1648 0.24 +0.6
279,409 + GFF1648 0.24 -1.0
279,409 + GFF1648 0.24 -1.0
279,447 + GFF1648 0.28 -0.5
279,560 + GFF1648 0.37 +0.0
279,565 + GFF1648 0.38 -1.6
279,650 + GFF1648 0.45 +0.6
279,650 + GFF1648 0.45 -1.0
279,650 + GFF1648 0.45 -2.3
279,651 - GFF1648 0.45 -0.3
279,652 + GFF1648 0.45 -1.6
279,652 + GFF1648 0.45 -1.0
279,652 + GFF1648 0.45 -1.0
279,652 + GFF1648 0.45 +1.3
279,653 - GFF1648 0.45 -1.0
279,653 - GFF1648 0.45 -2.3
279,653 - GFF1648 0.45 -1.6
279,653 - GFF1648 0.45 -0.1
279,730 + GFF1648 0.52 -0.2
279,730 + GFF1648 0.52 -1.3
279,730 + GFF1648 0.52 -0.2
279,750 + GFF1648 0.53 -1.0
279,750 + GFF1648 0.53 -1.3
279,750 + GFF1648 0.53 -0.3
279,751 - GFF1648 0.53 -1.8
279,843 + GFF1648 0.61 -1.0
279,843 + GFF1648 0.61 -1.2
279,843 + GFF1648 0.61 -1.3
279,843 + GFF1648 0.61 +1.0
279,843 + GFF1648 0.61 -1.0
279,844 - GFF1648 0.61 -1.8
279,844 - GFF1648 0.61 +0.0
279,844 - GFF1648 0.61 -2.0
279,844 - GFF1648 0.61 +0.3
279,844 - GFF1648 0.61 -1.0
279,862 + GFF1648 0.63 -1.0
279,862 + GFF1648 0.63 -1.0
279,863 - GFF1648 0.63 -1.5
279,865 + GFF1648 0.63 -1.0
280,096 + GFF1648 0.83 +1.3
280,096 + GFF1648 0.83 -2.0
280,097 - GFF1648 0.83 -1.8
280,298 + +0.6
280,298 + +0.5
280,323 + +0.6
280,332 + -2.0
280,332 + -1.1
280,332 + -1.0
280,332 + -1.0
280,333 - -1.3
280,337 + -0.6
280,356 + -1.0
280,356 + -0.9
280,356 + -0.7
280,357 - -2.2
280,382 + -1.0
280,430 + -0.8
280,431 - -1.3
280,588 + -0.5
280,588 + +1.3
280,588 + -1.6
280,588 + -1.7
280,589 - -1.0
280,611 + -1.3
280,611 + -2.0
280,616 + +0.0
280,622 + -1.3
280,622 + -1.2
280,622 + -1.3
280,640 + -3.5
280,658 + -1.0
280,747 + GFF1649 0.12 -1.3
280,747 + GFF1649 0.12 -0.4
280,847 + GFF1649 0.16 -0.3
280,847 + GFF1649 0.16 -1.0
280,851 + GFF1649 0.16 -1.2
280,857 - GFF1649 0.16 -1.0
280,934 + GFF1649 0.18 -0.0
280,934 + GFF1649 0.18 -0.6
280,934 + GFF1649 0.18 -0.3
280,934 + GFF1649 0.18 +0.3
280,934 + GFF1649 0.18 -1.3
280,935 - GFF1649 0.18 -0.3
280,935 - GFF1649 0.18 -1.6
280,935 - GFF1649 0.18 -1.6
280,935 - GFF1649 0.18 -1.8
280,982 + GFF1649 0.20 -1.2
281,025 + GFF1649 0.21 -0.3
281,026 - GFF1649 0.21 -0.3
281,093 + GFF1649 0.23 -1.0
281,094 - GFF1649 0.23 -0.6
281,094 - GFF1649 0.23 -0.6
281,132 + GFF1649 0.25 -0.3
281,133 - GFF1649 0.25 +1.0
281,208 + GFF1649 0.27 -1.8
281,208 + GFF1649 0.27 -1.0
281,208 + GFF1649 0.27 +0.3
281,208 + GFF1649 0.27 -1.6
281,211 - GFF1649 0.27 -0.0
281,284 + GFF1649 0.29 -1.0
281,352 + GFF1649 0.32 -0.0
281,352 + GFF1649 0.32 -1.1
281,411 + GFF1649 0.33 -1.0
281,411 + GFF1649 0.33 -0.6
281,411 + GFF1649 0.33 -1.3
281,520 - GFF1649 0.37 -1.6
281,520 - GFF1649 0.37 -2.0
281,535 + GFF1649 0.37 -1.6
281,535 + GFF1649 0.37 -2.0
281,535 + GFF1649 0.37 -1.3
281,535 + GFF1649 0.37 -0.0
281,535 + GFF1649 0.37 -1.5
281,535 + GFF1649 0.37 -2.0
281,536 - GFF1649 0.37 -0.6
281,681 + GFF1649 0.42 -0.0
281,682 - GFF1649 0.42 +0.4
281,682 - GFF1649 0.42 -0.0
281,682 - GFF1649 0.42 -1.0
281,722 + GFF1649 0.43 -0.0
281,722 + GFF1649 0.43 -1.3
281,860 + GFF1649 0.48 -0.5
281,860 + GFF1649 0.48 -0.3
281,860 + GFF1649 0.48 -1.8
281,860 + GFF1649 0.48 -0.5
281,860 + GFF1649 0.48 -1.3
281,860 + GFF1649 0.48 -1.2
281,949 + GFF1649 0.50 -0.6
281,949 + GFF1649 0.50 -0.8
281,950 - GFF1649 0.50 -0.8
282,081 + GFF1649 0.55 +0.3
282,082 - GFF1649 0.55 +1.0
282,089 + GFF1649 0.55 -1.2
282,089 + GFF1649 0.55 -1.8
282,089 + GFF1649 0.55 -1.0
282,322 + GFF1649 0.62 -0.8
282,408 + GFF1649 0.65 -1.0
282,408 + GFF1649 0.65 -0.9
282,409 - GFF1649 0.65 -0.3
282,409 - GFF1649 0.65 -1.0
282,509 + GFF1649 0.68 -2.0
282,540 + GFF1649 0.69 -2.3
282,597 + GFF1649 0.71 -1.8
282,597 + GFF1649 0.71 -1.3
282,598 - GFF1649 0.71 -1.0
282,630 + GFF1649 0.72 -1.5
282,630 + GFF1649 0.72 -0.4
282,631 - GFF1649 0.72 -1.8
282,650 + GFF1649 0.73 -1.2
282,726 + GFF1649 0.75 -1.0
282,726 + GFF1649 0.75 -1.0
282,726 + GFF1649 0.75 -0.0
282,726 + GFF1649 0.75 -1.6
282,726 + GFF1649 0.75 -0.7
282,726 + GFF1649 0.75 -0.0
282,727 - GFF1649 0.75 -1.8
282,727 - GFF1649 0.75 -1.6
282,730 + GFF1649 0.75 -2.3
282,730 + GFF1649 0.75 -1.2
282,730 + GFF1649 0.75 -0.0
282,730 + GFF1649 0.75 -1.2
282,730 + GFF1649 0.75 -0.5
282,730 + GFF1649 0.75 -0.6
282,730 + GFF1649 0.75 -0.3
282,730 + GFF1649 0.75 -2.3
282,731 - GFF1649 0.75 -0.6
282,731 - GFF1649 0.75 -0.6
282,767 + GFF1649 0.76 -1.3
282,767 + GFF1649 0.76 +0.2
282,767 + GFF1649 0.76 -0.4
282,969 + GFF1649 0.83 +0.7
283,155 + GFF1649 0.88 -0.6
283,155 + GFF1649 0.88 -0.5
283,334 + -1.0
283,345 + -1.2
283,454 + -0.0
283,614 + -0.5
283,614 + +0.6
283,616 + -0.1
283,616 + -1.0
283,616 + -1.0
283,617 - -1.3
283,617 - -0.8
283,618 + -1.1
283,649 + +0.3
283,649 + +0.6
283,649 + -1.6
283,649 + -1.0
283,649 + -2.2
283,649 + -0.0
283,750 + GFF1650 0.16 -1.6
283,805 + GFF1650 0.20 -0.8
283,805 + GFF1650 0.20 -1.0
283,936 + GFF1650 0.29 -1.0
283,937 - GFF1650 0.29 -1.0
283,957 + GFF1650 0.30 -1.6
284,030 + GFF1650 0.35 -1.2
284,031 - GFF1650 0.35 -1.0
284,046 + GFF1650 0.36 -1.8
284,081 + GFF1650 0.39 -0.3
284,082 - GFF1650 0.39 -2.5
284,188 + GFF1650 0.46 -1.2
284,223 + GFF1650 0.48 -1.0
284,235 + GFF1650 0.49 -0.6
284,310 + GFF1650 0.54 -0.4
284,310 + GFF1650 0.54 -1.3
284,337 + GFF1650 0.56 -1.1
284,474 + GFF1650 0.66 -0.6

Or see this region's nucleotide sequence