Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1646 and GFF1647 are separated by 79 nucleotides GFF1647 and GFF1648 are separated by 198 nucleotides GFF1648 and GFF1649 are separated by 52 nucleotides
GFF1646 - tRNA-dihydrouridine synthase B, at 277,174 to 278,217
GFF1646
GFF1647 - HTH-type transcriptional regulator TtgR, at 278,297 to 278,923
GFF1647
GFF1648 - Multidrug efflux pump subunit AcrA, at 279,122 to 280,300
GFF1648
GFF1649 - Efflux pump membrane transporter BepE, at 280,353 to 283,520
GFF1649
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 278.280 kb on + strand at 278.280 kb on + strand at 278.280 kb on + strand at 278.281 kb on - strand at 278.281 kb on - strand at 278.281 kb on - strand at 278.315 kb on - strand at 278.331 kb on - strand at 278.331 kb on - strand at 278.331 kb on - strand at 278.355 kb on - strand at 278.355 kb on - strand at 278.391 kb on - strand, within GFF1647 at 278.438 kb on - strand, within GFF1647 at 278.438 kb on - strand, within GFF1647 at 278.478 kb on + strand, within GFF1647 at 278.510 kb on - strand, within GFF1647 at 278.515 kb on + strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.519 kb on + strand, within GFF1647 at 278.520 kb on - strand, within GFF1647 at 278.520 kb on - strand, within GFF1647 at 278.525 kb on - strand, within GFF1647 at 278.583 kb on + strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.612 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.666 kb on - strand, within GFF1647 at 278.666 kb on - strand, within GFF1647 at 278.712 kb on - strand, within GFF1647 at 278.712 kb on - strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.725 kb on - strand, within GFF1647 at 278.725 kb on - strand, within GFF1647 at 278.725 kb on - strand, within GFF1647 at 278.778 kb on + strand, within GFF1647 at 278.779 kb on - strand, within GFF1647 at 278.795 kb on - strand, within GFF1647 at 278.875 kb on + strand at 278.875 kb on + strand at 278.914 kb on + strand at 278.914 kb on + strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.918 kb on + strand at 278.918 kb on + strand at 278.919 kb on - strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.931 kb on + strand at 278.931 kb on + strand at 278.932 kb on - strand at 278.944 kb on + strand at 278.944 kb on + strand at 278.945 kb on - strand at 278.974 kb on + strand at 278.974 kb on + strand at 278.975 kb on - strand at 278.980 kb on - strand at 279.041 kb on + strand at 279.042 kb on - strand at 279.059 kb on + strand at 279.060 kb on - strand at 279.060 kb on - strand at 279.062 kb on - strand at 279.062 kb on - strand at 279.064 kb on - strand at 279.064 kb on - strand at 279.067 kb on - strand at 279.082 kb on + strand at 279.082 kb on + strand at 279.086 kb on + strand at 279.174 kb on + strand at 279.409 kb on + strand, within GFF1648 at 279.409 kb on + strand, within GFF1648 at 279.409 kb on + strand, within GFF1648 at 279.447 kb on + strand, within GFF1648 at 279.560 kb on + strand, within GFF1648 at 279.565 kb on + strand, within GFF1648 at 279.650 kb on + strand, within GFF1648 at 279.650 kb on + strand, within GFF1648 at 279.650 kb on + strand, within GFF1648 at 279.651 kb on - strand, within GFF1648 at 279.652 kb on + strand, within GFF1648 at 279.652 kb on + strand, within GFF1648 at 279.652 kb on + strand, within GFF1648 at 279.652 kb on + strand, within GFF1648 at 279.653 kb on - strand, within GFF1648 at 279.653 kb on - strand, within GFF1648 at 279.653 kb on - strand, within GFF1648 at 279.653 kb on - strand, within GFF1648 at 279.730 kb on + strand, within GFF1648 at 279.730 kb on + strand, within GFF1648 at 279.730 kb on + strand, within GFF1648 at 279.750 kb on + strand, within GFF1648 at 279.750 kb on + strand, within GFF1648 at 279.750 kb on + strand, within GFF1648 at 279.751 kb on - strand, within GFF1648 at 279.843 kb on + strand, within GFF1648 at 279.843 kb on + strand, within GFF1648 at 279.843 kb on + strand, within GFF1648 at 279.843 kb on + strand, within GFF1648 at 279.843 kb on + strand, within GFF1648 at 279.844 kb on - strand, within GFF1648 at 279.844 kb on - strand, within GFF1648 at 279.844 kb on - strand, within GFF1648 at 279.844 kb on - strand, within GFF1648 at 279.844 kb on - strand, within GFF1648 at 279.862 kb on + strand, within GFF1648 at 279.862 kb on + strand, within GFF1648 at 279.863 kb on - strand, within GFF1648 at 279.865 kb on + strand, within GFF1648 at 280.096 kb on + strand, within GFF1648 at 280.096 kb on + strand, within GFF1648 at 280.097 kb on - strand, within GFF1648 at 280.298 kb on + strand at 280.298 kb on + strand at 280.323 kb on + strand at 280.332 kb on + strand at 280.332 kb on + strand at 280.332 kb on + strand at 280.332 kb on + strand at 280.333 kb on - strand at 280.337 kb on + strand at 280.356 kb on + strand at 280.356 kb on + strand at 280.356 kb on + strand at 280.357 kb on - strand at 280.382 kb on + strand at 280.430 kb on + strand at 280.431 kb on - strand at 280.588 kb on + strand at 280.588 kb on + strand at 280.588 kb on + strand at 280.588 kb on + strand at 280.589 kb on - strand at 280.611 kb on + strand at 280.611 kb on + strand at 280.616 kb on + strand at 280.622 kb on + strand at 280.622 kb on + strand at 280.622 kb on + strand at 280.640 kb on + strand at 280.658 kb on + strand at 280.747 kb on + strand, within GFF1649 at 280.747 kb on + strand, within GFF1649 at 280.847 kb on + strand, within GFF1649 at 280.847 kb on + strand, within GFF1649 at 280.851 kb on + strand, within GFF1649 at 280.857 kb on - strand, within GFF1649 at 280.934 kb on + strand, within GFF1649 at 280.934 kb on + strand, within GFF1649 at 280.934 kb on + strand, within GFF1649 at 280.934 kb on + strand, within GFF1649 at 280.934 kb on + strand, within GFF1649 at 280.935 kb on - strand, within GFF1649 at 280.935 kb on - strand, within GFF1649 at 280.935 kb on - strand, within GFF1649 at 280.935 kb on - strand, within GFF1649 at 280.982 kb on + strand, within GFF1649 at 281.025 kb on + strand, within GFF1649 at 281.026 kb on - strand, within GFF1649 at 281.093 kb on + strand, within GFF1649 at 281.094 kb on - strand, within GFF1649 at 281.094 kb on - strand, within GFF1649 at 281.132 kb on + strand, within GFF1649 at 281.133 kb on - strand, within GFF1649 at 281.208 kb on + strand, within GFF1649 at 281.208 kb on + strand, within GFF1649 at 281.208 kb on + strand, within GFF1649 at 281.208 kb on + strand, within GFF1649 at 281.211 kb on - strand, within GFF1649 at 281.284 kb on + strand, within GFF1649
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 278,280 + -0.9 278,280 + +0.3 278,280 + -1.1 278,281 - +0.1 278,281 - -0.8 278,281 - -0.5 278,315 - -1.7 278,331 - -1.0 278,331 - -0.1 278,331 - -1.3 278,355 - -1.8 278,355 - -1.4 278,391 - GFF1647 0.15 -1.7 278,438 - GFF1647 0.22 -1.1 278,438 - GFF1647 0.22 -2.7 278,478 + GFF1647 0.29 -2.3 278,510 - GFF1647 0.34 -1.2 278,515 + GFF1647 0.35 -3.6 278,516 - GFF1647 0.35 -0.3 278,516 - GFF1647 0.35 -1.3 278,516 - GFF1647 0.35 -1.9 278,516 - GFF1647 0.35 -2.8 278,516 - GFF1647 0.35 -2.3 278,519 + GFF1647 0.35 -1.6 278,520 - GFF1647 0.36 -1.6 278,520 - GFF1647 0.36 -0.2 278,525 - GFF1647 0.36 -0.4 278,583 + GFF1647 0.46 -0.7 278,584 - GFF1647 0.46 -2.5 278,584 - GFF1647 0.46 +0.5 278,584 - GFF1647 0.46 -1.2 278,584 - GFF1647 0.46 -1.2 278,584 - GFF1647 0.46 -1.0 278,612 - GFF1647 0.50 -0.8 278,622 - GFF1647 0.52 -1.0 278,622 - GFF1647 0.52 -1.6 278,622 - GFF1647 0.52 -2.2 278,622 - GFF1647 0.52 -2.9 278,666 - GFF1647 0.59 -2.6 278,666 - GFF1647 0.59 -1.3 278,712 - GFF1647 0.66 -2.2 278,712 - GFF1647 0.66 -2.2 278,724 + GFF1647 0.68 +0.1 278,724 + GFF1647 0.68 -1.3 278,724 + GFF1647 0.68 -0.2 278,724 + GFF1647 0.68 -1.3 278,725 - GFF1647 0.68 -0.8 278,725 - GFF1647 0.68 -0.2 278,725 - GFF1647 0.68 -1.7 278,778 + GFF1647 0.77 -0.8 278,779 - GFF1647 0.77 -2.4 278,795 - GFF1647 0.79 +0.3 278,875 + -2.6 278,875 + -2.0 278,914 + -0.1 278,914 + -1.5 278,915 - +0.3 278,915 - -1.0 278,915 - -1.5 278,915 - -1.3 278,915 - -0.9 278,918 + -0.3 278,918 + -1.7 278,919 - +0.0 278,923 + +0.2 278,923 + +0.0 278,923 + -0.3 278,923 + -1.0 278,923 + -0.3 278,923 + +0.4 278,924 - -2.0 278,924 - -1.6 278,924 - -1.3 278,924 - +0.2 278,924 - +0.4 278,924 - -0.6 278,924 - -1.1 278,924 - -1.2 278,924 - -1.8 278,924 - -0.9 278,927 + -0.8 278,927 + -1.8 278,927 + -1.0 278,927 + -1.4 278,927 + -1.2 278,927 + -1.1 278,928 - +0.8 278,928 - +1.0 278,928 - -0.2 278,928 - -1.2 278,928 - -1.3 278,928 - -1.3 278,928 - -0.8 278,928 - -0.6 278,928 - -0.2 278,928 - -1.7 278,928 - -0.4 278,931 + -1.5 278,931 + +0.3 278,932 - -0.6 278,944 + -1.3 278,944 + -0.7 278,945 - -0.6 278,974 + +0.5 278,974 + +0.6 278,975 - -0.2 278,980 - +0.8 279,041 + -0.6 279,042 - +0.6 279,059 + -0.4 279,060 - +0.5 279,060 - +0.7 279,062 - +0.0 279,062 - -1.2 279,064 - +0.3 279,064 - -1.4 279,067 - -2.0 279,082 + +0.0 279,082 + -0.8 279,086 + -1.3 279,174 + -1.0 279,409 + GFF1648 0.24 +0.6 279,409 + GFF1648 0.24 -1.0 279,409 + GFF1648 0.24 -1.0 279,447 + GFF1648 0.28 -0.5 279,560 + GFF1648 0.37 +0.0 279,565 + GFF1648 0.38 -1.6 279,650 + GFF1648 0.45 +0.6 279,650 + GFF1648 0.45 -1.0 279,650 + GFF1648 0.45 -2.3 279,651 - GFF1648 0.45 -0.3 279,652 + GFF1648 0.45 -1.6 279,652 + GFF1648 0.45 -1.0 279,652 + GFF1648 0.45 -1.0 279,652 + GFF1648 0.45 +1.3 279,653 - GFF1648 0.45 -1.0 279,653 - GFF1648 0.45 -2.3 279,653 - GFF1648 0.45 -1.6 279,653 - GFF1648 0.45 -0.1 279,730 + GFF1648 0.52 -0.2 279,730 + GFF1648 0.52 -1.3 279,730 + GFF1648 0.52 -0.2 279,750 + GFF1648 0.53 -1.0 279,750 + GFF1648 0.53 -1.3 279,750 + GFF1648 0.53 -0.3 279,751 - GFF1648 0.53 -1.8 279,843 + GFF1648 0.61 -1.0 279,843 + GFF1648 0.61 -1.2 279,843 + GFF1648 0.61 -1.3 279,843 + GFF1648 0.61 +1.0 279,843 + GFF1648 0.61 -1.0 279,844 - GFF1648 0.61 -1.8 279,844 - GFF1648 0.61 +0.0 279,844 - GFF1648 0.61 -2.0 279,844 - GFF1648 0.61 +0.3 279,844 - GFF1648 0.61 -1.0 279,862 + GFF1648 0.63 -1.0 279,862 + GFF1648 0.63 -1.0 279,863 - GFF1648 0.63 -1.5 279,865 + GFF1648 0.63 -1.0 280,096 + GFF1648 0.83 +1.3 280,096 + GFF1648 0.83 -2.0 280,097 - GFF1648 0.83 -1.8 280,298 + +0.6 280,298 + +0.5 280,323 + +0.6 280,332 + -2.0 280,332 + -1.1 280,332 + -1.0 280,332 + -1.0 280,333 - -1.3 280,337 + -0.6 280,356 + -1.0 280,356 + -0.9 280,356 + -0.7 280,357 - -2.2 280,382 + -1.0 280,430 + -0.8 280,431 - -1.3 280,588 + -0.5 280,588 + +1.3 280,588 + -1.6 280,588 + -1.7 280,589 - -1.0 280,611 + -1.3 280,611 + -2.0 280,616 + +0.0 280,622 + -1.3 280,622 + -1.2 280,622 + -1.3 280,640 + -3.5 280,658 + -1.0 280,747 + GFF1649 0.12 -1.3 280,747 + GFF1649 0.12 -0.4 280,847 + GFF1649 0.16 -0.3 280,847 + GFF1649 0.16 -1.0 280,851 + GFF1649 0.16 -1.2 280,857 - GFF1649 0.16 -1.0 280,934 + GFF1649 0.18 -0.0 280,934 + GFF1649 0.18 -0.6 280,934 + GFF1649 0.18 -0.3 280,934 + GFF1649 0.18 +0.3 280,934 + GFF1649 0.18 -1.3 280,935 - GFF1649 0.18 -0.3 280,935 - GFF1649 0.18 -1.6 280,935 - GFF1649 0.18 -1.6 280,935 - GFF1649 0.18 -1.8 280,982 + GFF1649 0.20 -1.2 281,025 + GFF1649 0.21 -0.3 281,026 - GFF1649 0.21 -0.3 281,093 + GFF1649 0.23 -1.0 281,094 - GFF1649 0.23 -0.6 281,094 - GFF1649 0.23 -0.6 281,132 + GFF1649 0.25 -0.3 281,133 - GFF1649 0.25 +1.0 281,208 + GFF1649 0.27 -1.8 281,208 + GFF1649 0.27 -1.0 281,208 + GFF1649 0.27 +0.3 281,208 + GFF1649 0.27 -1.6 281,211 - GFF1649 0.27 -0.0 281,284 + GFF1649 0.29 -1.0
Or see this region's nucleotide sequence