Strain Fitness in Methylophilus sp. DMC18 around GFF161

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF159 and GFF160 overlap by 23 nucleotidesGFF160 and GFF161 overlap by 4 nucleotidesGFF161 and GFF162 are separated by 23 nucleotidesGFF162 and GFF163 overlap by 4 nucleotides GFF159 - hypothetical protein, at 157,641 to 158,501 GFF159 GFF160 - hypothetical protein, at 158,479 to 158,820 GFF160 GFF161 - hypothetical protein, at 158,817 to 159,101 GFF161 GFF162 - hypothetical protein, at 159,125 to 159,460 GFF162 GFF163 - Cysteine desulfurase NifS, at 159,457 to 160,623 GFF163 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1 2at 157.826 kb on - strand, within GFF159at 157.826 kb on - strand, within GFF159at 157.826 kb on - strand, within GFF159at 157.868 kb on + strand, within GFF159at 157.963 kb on + strand, within GFF159at 157.963 kb on + strand, within GFF159at 158.016 kb on + strand, within GFF159at 158.016 kb on + strand, within GFF159at 158.016 kb on + strand, within GFF159at 158.016 kb on + strand, within GFF159at 158.016 kb on + strand, within GFF159at 158.016 kb on + strand, within GFF159at 158.088 kb on + strand, within GFF159at 158.088 kb on + strand, within GFF159at 158.088 kb on + strand, within GFF159at 158.088 kb on + strand, within GFF159at 158.088 kb on + strand, within GFF159at 158.089 kb on - strand, within GFF159at 158.089 kb on - strand, within GFF159at 158.089 kb on - strand, within GFF159at 158.089 kb on - strand, within GFF159at 158.089 kb on - strand, within GFF159at 158.100 kb on + strand, within GFF159at 158.101 kb on - strand, within GFF159at 158.103 kb on + strand, within GFF159at 158.103 kb on + strand, within GFF159at 158.103 kb on + strand, within GFF159at 158.103 kb on + strand, within GFF159at 158.152 kb on - strand, within GFF159at 158.225 kb on - strand, within GFF159at 158.225 kb on - strand, within GFF159at 158.238 kb on - strand, within GFF159at 158.238 kb on - strand, within GFF159at 158.370 kb on - strand, within GFF159at 158.370 kb on - strand, within GFF159at 158.419 kb on + strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.466 kb on - strandat 158.466 kb on - strandat 158.466 kb on - strandat 158.495 kb on + strandat 158.496 kb on - strandat 158.570 kb on - strand, within GFF160at 158.654 kb on + strand, within GFF160at 158.655 kb on - strand, within GFF160at 158.655 kb on - strand, within GFF160at 158.655 kb on - strand, within GFF160at 158.677 kb on + strand, within GFF160at 158.679 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.683 kb on + strand, within GFF160at 158.684 kb on - strand, within GFF160at 158.684 kb on - strand, within GFF160at 158.684 kb on - strand, within GFF160at 158.684 kb on - strand, within GFF160at 158.684 kb on - strand, within GFF160at 158.684 kb on - strand, within GFF160at 158.698 kb on + strand, within GFF160at 158.858 kb on + strand, within GFF161at 158.876 kb on + strand, within GFF161at 158.876 kb on + strand, within GFF161at 159.036 kb on + strand, within GFF161at 159.037 kb on - strand, within GFF161at 159.099 kb on + strandat 159.100 kb on - strandat 159.213 kb on - strand, within GFF162at 159.213 kb on - strand, within GFF162at 159.238 kb on + strand, within GFF162at 159.283 kb on - strand, within GFF162at 159.307 kb on + strand, within GFF162at 159.307 kb on + strand, within GFF162at 159.323 kb on + strand, within GFF162at 159.467 kb on + strandat 159.468 kb on - strandat 159.469 kb on + strandat 159.469 kb on + strandat 159.469 kb on + strandat 159.490 kb on - strandat 159.537 kb on + strandat 159.538 kb on - strandat 159.538 kb on - strandat 159.544 kb on + strandat 160.063 kb on + strand, within GFF163at 160.064 kb on - strand, within GFF163at 160.090 kb on + strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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157,826 - GFF159 0.21 +0.6
157,826 - GFF159 0.21 -1.1
157,826 - GFF159 0.21 -1.4
157,868 + GFF159 0.26 -0.6
157,963 + GFF159 0.37 -1.7
157,963 + GFF159 0.37 -1.2
158,016 + GFF159 0.44 -2.0
158,016 + GFF159 0.44 -1.0
158,016 + GFF159 0.44 -1.4
158,016 + GFF159 0.44 -0.3
158,016 + GFF159 0.44 -0.2
158,016 + GFF159 0.44 +0.8
158,088 + GFF159 0.52 -0.0
158,088 + GFF159 0.52 -0.8
158,088 + GFF159 0.52 -0.4
158,088 + GFF159 0.52 -0.6
158,088 + GFF159 0.52 +1.2
158,089 - GFF159 0.52 -0.0
158,089 - GFF159 0.52 -2.5
158,089 - GFF159 0.52 -0.0
158,089 - GFF159 0.52 +0.5
158,089 - GFF159 0.52 -1.6
158,100 + GFF159 0.53 -1.2
158,101 - GFF159 0.53 -0.4
158,103 + GFF159 0.54 +0.5
158,103 + GFF159 0.54 -0.4
158,103 + GFF159 0.54 -0.5
158,103 + GFF159 0.54 -0.9
158,152 - GFF159 0.59 -0.2
158,225 - GFF159 0.68 +0.8
158,225 - GFF159 0.68 -1.8
158,238 - GFF159 0.69 -1.8
158,238 - GFF159 0.69 -0.8
158,370 - GFF159 0.85 -0.7
158,370 - GFF159 0.85 -0.8
158,419 + +0.7
158,465 + -1.2
158,465 + -0.3
158,465 + -1.0
158,466 - -0.5
158,466 - +0.0
158,466 - -0.0
158,495 + +0.4
158,496 - -0.6
158,570 - GFF160 0.27 +0.7
158,654 + GFF160 0.51 -0.9
158,655 - GFF160 0.51 +0.2
158,655 - GFF160 0.51 -1.4
158,655 - GFF160 0.51 -1.4
158,677 + GFF160 0.58 +0.2
158,679 + GFF160 0.58 -1.1
158,683 + GFF160 0.60 +1.0
158,683 + GFF160 0.60 -0.6
158,683 + GFF160 0.60 -0.0
158,683 + GFF160 0.60 -0.2
158,683 + GFF160 0.60 -1.4
158,683 + GFF160 0.60 -1.4
158,683 + GFF160 0.60 -1.0
158,683 + GFF160 0.60 +0.0
158,683 + GFF160 0.60 -0.8
158,683 + GFF160 0.60 -1.6
158,683 + GFF160 0.60 -1.5
158,683 + GFF160 0.60 -0.3
158,683 + GFF160 0.60 -0.0
158,684 - GFF160 0.60 -0.6
158,684 - GFF160 0.60 -1.8
158,684 - GFF160 0.60 +0.6
158,684 - GFF160 0.60 -0.7
158,684 - GFF160 0.60 -0.6
158,684 - GFF160 0.60 -1.0
158,698 + GFF160 0.64 -1.4
158,858 + GFF161 0.14 -1.5
158,876 + GFF161 0.21 -2.1
158,876 + GFF161 0.21 -1.0
159,036 + GFF161 0.77 -0.8
159,037 - GFF161 0.77 +0.3
159,099 + -0.0
159,100 - +0.2
159,213 - GFF162 0.26 -0.4
159,213 - GFF162 0.26 -1.4
159,238 + GFF162 0.34 +1.8
159,283 - GFF162 0.47 +0.6
159,307 + GFF162 0.54 -1.0
159,307 + GFF162 0.54 +0.3
159,323 + GFF162 0.59 -0.2
159,467 + -0.4
159,468 - -1.3
159,469 + +0.2
159,469 + +0.2
159,469 + -0.3
159,490 - -1.4
159,537 + -0.8
159,538 - -0.0
159,538 - -0.6
159,544 + +0.4
160,063 + GFF163 0.52 -0.9
160,064 - GFF163 0.52 +0.8
160,090 + GFF163 0.54 -0.7
160,091 - GFF163 0.54 -0.0
160,091 - GFF163 0.54 -1.2
160,091 - GFF163 0.54 -0.5
160,091 - GFF163 0.54 +0.2
160,091 - GFF163 0.54 -0.0

Or see this region's nucleotide sequence