Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1432 and GFF1433 are separated by 219 nucleotides GFF1433 and GFF1434 are separated by 58 nucleotides GFF1434 and GFF1435 are separated by 7 nucleotides GFF1435 and GFF1436 are separated by 5 nucleotides
GFF1432 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 79,250 to 80,830
GFF1432
GFF1433 - hypothetical protein, at 81,050 to 81,271
GFF1433
GFF1434 - hypothetical protein, at 81,330 to 81,755
GFF1434
GFF1435 - hypothetical protein, at 81,763 to 82,182
GFF1435
GFF1436 - Anaerobic nitric oxide reductase transcription regulator NorR, at 82,188 to 83,552
GFF1436
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.813 kb on + strand at 80.814 kb on + strand at 80.815 kb on - strand at 80.889 kb on + strand at 80.890 kb on - strand at 80.908 kb on - strand at 80.983 kb on + strand at 81.008 kb on + strand at 81.008 kb on + strand at 81.008 kb on + strand at 81.008 kb on + strand at 81.008 kb on + strand at 81.009 kb on - strand at 81.009 kb on - strand at 81.009 kb on - strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.013 kb on + strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.014 kb on - strand at 81.025 kb on - strand at 81.046 kb on + strand at 81.046 kb on + strand at 81.046 kb on + strand at 81.046 kb on + strand at 81.047 kb on - strand at 81.047 kb on - strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.065 kb on + strand at 81.066 kb on - strand at 81.066 kb on - strand at 81.122 kb on + strand, within GFF1433 at 81.123 kb on - strand, within GFF1433 at 81.220 kb on + strand, within GFF1433 at 81.220 kb on + strand, within GFF1433 at 81.220 kb on + strand, within GFF1433 at 81.220 kb on + strand, within GFF1433 at 81.289 kb on + strand at 81.290 kb on - strand at 81.290 kb on - strand at 81.301 kb on + strand at 81.302 kb on - strand at 81.302 kb on - strand at 81.319 kb on + strand at 81.342 kb on - strand at 81.376 kb on + strand, within GFF1434 at 81.376 kb on + strand, within GFF1434 at 81.376 kb on + strand, within GFF1434 at 81.377 kb on - strand, within GFF1434 at 81.522 kb on + strand, within GFF1434 at 81.522 kb on + strand, within GFF1434 at 81.523 kb on - strand, within GFF1434 at 81.546 kb on - strand, within GFF1434 at 81.698 kb on + strand, within GFF1434 at 81.699 kb on - strand, within GFF1434 at 81.699 kb on - strand, within GFF1434 at 81.699 kb on - strand, within GFF1434 at 81.699 kb on - strand, within GFF1434 at 81.748 kb on + strand at 81.748 kb on + strand at 81.748 kb on + strand at 81.749 kb on - strand at 81.753 kb on + strand at 81.753 kb on + strand at 81.754 kb on - strand at 81.754 kb on - strand at 81.754 kb on - strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.783 kb on - strand at 81.845 kb on + strand, within GFF1435 at 81.846 kb on - strand, within GFF1435 at 81.846 kb on - strand, within GFF1435 at 81.846 kb on - strand, within GFF1435 at 81.984 kb on - strand, within GFF1435 at 82.152 kb on + strand at 82.152 kb on + strand at 82.152 kb on + strand at 82.152 kb on + strand at 82.153 kb on - strand at 82.153 kb on - strand at 82.187 kb on - strand at 82.377 kb on + strand, within GFF1436 at 82.378 kb on - strand, within GFF1436 at 82.378 kb on - strand, within GFF1436 at 82.378 kb on - strand, within GFF1436 at 82.378 kb on - strand, within GFF1436 at 82.378 kb on - strand, within GFF1436 at 82.378 kb on - strand, within GFF1436 at 82.435 kb on + strand, within GFF1436 at 82.435 kb on + strand, within GFF1436 at 82.435 kb on + strand, within GFF1436 at 82.436 kb on - strand, within GFF1436 at 82.436 kb on - strand, within GFF1436 at 82.436 kb on - strand, within GFF1436 at 82.436 kb on - strand, within GFF1436 at 82.436 kb on - strand, within GFF1436 at 82.480 kb on + strand, within GFF1436 at 82.480 kb on + strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.481 kb on - strand, within GFF1436 at 82.515 kb on + strand, within GFF1436 at 82.547 kb on + strand, within GFF1436 at 82.547 kb on + strand, within GFF1436 at 82.575 kb on - strand, within GFF1436 at 82.575 kb on - strand, within GFF1436 at 82.575 kb on - strand, within GFF1436 at 82.603 kb on - strand, within GFF1436 at 82.661 kb on + strand, within GFF1436 at 82.661 kb on + strand, within GFF1436 at 82.682 kb on + strand, within GFF1436 at 82.682 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.683 kb on - strand, within GFF1436 at 82.744 kb on + strand, within GFF1436 at 82.762 kb on - strand, within GFF1436 at 82.782 kb on + strand, within GFF1436 at 82.782 kb on + strand, within GFF1436 at 82.783 kb on - strand, within GFF1436
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 80,813 + -1.0 80,814 + +0.0 80,815 - +0.7 80,889 + -0.8 80,890 - -0.2 80,908 - -0.3 80,983 + +0.2 81,008 + +0.0 81,008 + -0.3 81,008 + +0.6 81,008 + -1.1 81,008 + -0.2 81,009 - -0.9 81,009 - -1.7 81,009 - -0.3 81,013 + +0.6 81,013 + -2.4 81,013 + -0.2 81,013 + +0.2 81,013 + +0.0 81,013 + +0.0 81,013 + +0.8 81,013 + +1.0 81,013 + +0.1 81,013 + +0.2 81,013 + -0.9 81,013 + +0.3 81,014 - -0.7 81,014 - -0.1 81,014 - -0.2 81,014 - -1.8 81,014 - +1.3 81,014 - -1.1 81,014 - -1.0 81,014 - -1.3 81,014 - -2.3 81,014 - -2.4 81,014 - -1.1 81,014 - -0.1 81,025 - -0.2 81,046 + +0.2 81,046 + -0.3 81,046 + -1.0 81,046 + -1.6 81,047 - -0.5 81,047 - -1.6 81,065 + -0.4 81,065 + -1.0 81,065 + -0.3 81,065 + -1.6 81,065 + -1.0 81,065 + -3.4 81,065 + -1.6 81,065 + -0.2 81,066 - -1.3 81,066 - +0.4 81,122 + GFF1433 0.32 -1.0 81,123 - GFF1433 0.33 +0.6 81,220 + GFF1433 0.77 +0.1 81,220 + GFF1433 0.77 +0.2 81,220 + GFF1433 0.77 -1.0 81,220 + GFF1433 0.77 -0.2 81,289 + -0.2 81,290 - +0.4 81,290 - -1.2 81,301 + -0.3 81,302 - -0.2 81,302 - -0.6 81,319 + +0.2 81,342 - -1.3 81,376 + GFF1434 0.11 +0.3 81,376 + GFF1434 0.11 +0.1 81,376 + GFF1434 0.11 -1.8 81,377 - GFF1434 0.11 +0.6 81,522 + GFF1434 0.45 -0.7 81,522 + GFF1434 0.45 -0.5 81,523 - GFF1434 0.45 +0.5 81,546 - GFF1434 0.51 -1.2 81,698 + GFF1434 0.86 +0.6 81,699 - GFF1434 0.87 -1.4 81,699 - GFF1434 0.87 -0.4 81,699 - GFF1434 0.87 -1.8 81,699 - GFF1434 0.87 -1.7 81,748 + -1.0 81,748 + -0.4 81,748 + -0.6 81,749 - -0.3 81,753 + -0.8 81,753 + -0.1 81,754 - +1.3 81,754 - -0.8 81,754 - -0.5 81,771 + +1.0 81,771 + -0.7 81,771 + -0.2 81,771 + +0.0 81,771 + -1.4 81,771 + +0.7 81,772 - +0.0 81,772 - -1.2 81,772 - +0.0 81,772 - -0.7 81,772 - -1.0 81,783 - -1.0 81,845 + GFF1435 0.20 -2.5 81,846 - GFF1435 0.20 -1.6 81,846 - GFF1435 0.20 -1.3 81,846 - GFF1435 0.20 -0.7 81,984 - GFF1435 0.53 -0.6 82,152 + -0.4 82,152 + -0.8 82,152 + -2.0 82,152 + -0.8 82,153 - -1.8 82,153 - +0.0 82,187 - -0.6 82,377 + GFF1436 0.14 +0.3 82,378 - GFF1436 0.14 -0.7 82,378 - GFF1436 0.14 -0.7 82,378 - GFF1436 0.14 +0.0 82,378 - GFF1436 0.14 -0.6 82,378 - GFF1436 0.14 +0.5 82,378 - GFF1436 0.14 -1.0 82,435 + GFF1436 0.18 -0.4 82,435 + GFF1436 0.18 -1.3 82,435 + GFF1436 0.18 -2.9 82,436 - GFF1436 0.18 -1.3 82,436 - GFF1436 0.18 -0.8 82,436 - GFF1436 0.18 -0.9 82,436 - GFF1436 0.18 -1.1 82,436 - GFF1436 0.18 -1.2 82,480 + GFF1436 0.21 -0.6 82,480 + GFF1436 0.21 +1.0 82,481 - GFF1436 0.21 -2.2 82,481 - GFF1436 0.21 +0.6 82,481 - GFF1436 0.21 -1.6 82,481 - GFF1436 0.21 +0.2 82,481 - GFF1436 0.21 +0.0 82,481 - GFF1436 0.21 +0.5 82,481 - GFF1436 0.21 +0.7 82,481 - GFF1436 0.21 -1.0 82,515 + GFF1436 0.24 -0.3 82,547 + GFF1436 0.26 -0.3 82,547 + GFF1436 0.26 -1.6 82,575 - GFF1436 0.28 -1.5 82,575 - GFF1436 0.28 -0.5 82,575 - GFF1436 0.28 -0.5 82,603 - GFF1436 0.30 -0.6 82,661 + GFF1436 0.35 -0.4 82,661 + GFF1436 0.35 -2.3 82,682 + GFF1436 0.36 -0.3 82,682 - GFF1436 0.36 +0.0 82,683 - GFF1436 0.36 -1.6 82,683 - GFF1436 0.36 -0.8 82,683 - GFF1436 0.36 +1.0 82,683 - GFF1436 0.36 +0.6 82,683 - GFF1436 0.36 -1.0 82,683 - GFF1436 0.36 +0.0 82,683 - GFF1436 0.36 -1.8 82,683 - GFF1436 0.36 -0.6 82,744 + GFF1436 0.41 +0.0 82,762 - GFF1436 0.42 +0.6 82,782 + GFF1436 0.44 -0.3 82,782 + GFF1436 0.44 -1.6 82,783 - GFF1436 0.44 -0.2
Or see this region's nucleotide sequence