Strain Fitness in Methylophilus sp. DMC18 around GFF1409

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1408 and GFF1409 overlap by 17 nucleotidesGFF1409 and GFF1410 are separated by 103 nucleotides GFF1408 - hypothetical protein, at 51,999 to 53,717 GFF1408 GFF1409 - hypothetical protein, at 53,701 to 54,147 GFF1409 GFF1410 - 1,4-alpha-glucan branching enzyme GlgB, at 54,251 to 56,104 GFF1410 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.713 kb on + strand, within GFF1408at 52.713 kb on + strand, within GFF1408at 52.713 kb on + strand, within GFF1408at 52.714 kb on - strand, within GFF1408at 52.714 kb on - strand, within GFF1408at 52.719 kb on + strand, within GFF1408at 52.719 kb on + strand, within GFF1408at 52.719 kb on + strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.720 kb on - strand, within GFF1408at 52.751 kb on + strand, within GFF1408at 52.751 kb on + strand, within GFF1408at 52.751 kb on + strand, within GFF1408at 52.751 kb on + strand, within GFF1408at 52.752 kb on - strand, within GFF1408at 52.752 kb on - strand, within GFF1408at 52.752 kb on - strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.845 kb on + strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.846 kb on - strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.849 kb on + strand, within GFF1408at 52.850 kb on - strand, within GFF1408at 52.850 kb on - strand, within GFF1408at 52.906 kb on + strand, within GFF1408at 52.907 kb on - strand, within GFF1408at 52.907 kb on - strand, within GFF1408at 52.927 kb on + strand, within GFF1408at 52.928 kb on - strand, within GFF1408at 52.928 kb on - strand, within GFF1408at 52.928 kb on - strand, within GFF1408at 52.928 kb on - strand, within GFF1408at 53.017 kb on + strand, within GFF1408at 53.025 kb on + strand, within GFF1408at 53.026 kb on - strand, within GFF1408at 53.108 kb on - strand, within GFF1408at 53.144 kb on - strand, within GFF1408at 53.159 kb on + strand, within GFF1408at 53.159 kb on + strand, within GFF1408at 53.160 kb on - strand, within GFF1408at 53.160 kb on - strand, within GFF1408at 53.160 kb on - strand, within GFF1408at 53.160 kb on - strand, within GFF1408at 53.309 kb on - strand, within GFF1408at 53.381 kb on + strand, within GFF1408at 53.382 kb on - strand, within GFF1408at 53.400 kb on + strand, within GFF1408at 53.401 kb on - strand, within GFF1408at 53.401 kb on - strand, within GFF1408at 53.401 kb on - strand, within GFF1408at 53.403 kb on + strand, within GFF1408at 53.457 kb on + strand, within GFF1408at 53.458 kb on - strand, within GFF1408at 53.458 kb on - strand, within GFF1408at 53.458 kb on - strand, within GFF1408at 53.470 kb on - strand, within GFF1408at 53.470 kb on - strand, within GFF1408at 53.537 kb on - strand, within GFF1408at 53.541 kb on - strand, within GFF1408at 53.608 kb on - strandat 53.675 kb on + strandat 53.676 kb on - strandat 53.676 kb on - strandat 53.708 kb on + strandat 53.709 kb on - strandat 53.720 kb on + strandat 53.721 kb on - strandat 53.721 kb on - strandat 53.721 kb on - strandat 53.797 kb on + strand, within GFF1409at 53.797 kb on + strand, within GFF1409at 53.798 kb on - strand, within GFF1409at 53.799 kb on + strand, within GFF1409at 53.799 kb on + strand, within GFF1409at 53.799 kb on + strand, within GFF1409at 53.799 kb on + strand, within GFF1409at 53.799 kb on + strand, within GFF1409at 53.800 kb on - strand, within GFF1409at 54.064 kb on + strand, within GFF1409at 54.121 kb on + strandat 54.121 kb on + strandat 54.122 kb on - strandat 54.214 kb on + strandat 54.215 kb on - strandat 54.216 kb on + strandat 54.217 kb on - strandat 54.222 kb on + strandat 54.223 kb on + strandat 54.223 kb on + strandat 54.224 kb on - strandat 54.232 kb on + strandat 54.233 kb on - strandat 54.252 kb on + strandat 54.275 kb on + strandat 54.276 kb on - strandat 54.285 kb on + strandat 54.384 kb on + strandat 54.447 kb on + strand, within GFF1410at 54.448 kb on - strand, within GFF1410at 54.553 kb on + strand, within GFF1410at 54.554 kb on - strand, within GFF1410at 54.558 kb on + strand, within GFF1410at 54.654 kb on + strand, within GFF1410at 54.655 kb on - strand, within GFF1410at 54.655 kb on - strand, within GFF1410at 54.731 kb on + strand, within GFF1410at 54.773 kb on + strand, within GFF1410at 54.854 kb on + strand, within GFF1410at 54.855 kb on - strand, within GFF1410at 54.855 kb on - strand, within GFF1410at 54.877 kb on - strand, within GFF1410at 54.891 kb on + strand, within GFF1410

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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52,713 + GFF1408 0.42 -0.2
52,713 + GFF1408 0.42 -1.0
52,713 + GFF1408 0.42 +0.6
52,714 - GFF1408 0.42 +1.0
52,714 - GFF1408 0.42 +0.2
52,719 + GFF1408 0.42 -0.3
52,719 + GFF1408 0.42 -0.4
52,719 + GFF1408 0.42 -0.4
52,720 - GFF1408 0.42 -0.9
52,720 - GFF1408 0.42 -0.3
52,720 - GFF1408 0.42 -1.3
52,720 - GFF1408 0.42 +0.0
52,720 - GFF1408 0.42 +0.6
52,720 - GFF1408 0.42 -0.5
52,720 - GFF1408 0.42 -1.0
52,751 + GFF1408 0.44 -0.9
52,751 + GFF1408 0.44 -1.0
52,751 + GFF1408 0.44 -0.1
52,751 + GFF1408 0.44 -0.3
52,752 - GFF1408 0.44 -1.0
52,752 - GFF1408 0.44 -0.5
52,752 - GFF1408 0.44 -1.6
52,845 + GFF1408 0.49 -1.3
52,845 + GFF1408 0.49 +0.1
52,845 + GFF1408 0.49 -2.4
52,845 + GFF1408 0.49 -0.8
52,845 + GFF1408 0.49 +1.0
52,845 + GFF1408 0.49 -0.2
52,845 + GFF1408 0.49 -0.9
52,845 + GFF1408 0.49 +1.1
52,845 + GFF1408 0.49 -0.8
52,845 + GFF1408 0.49 -1.2
52,845 + GFF1408 0.49 -1.0
52,845 + GFF1408 0.49 +1.0
52,846 - GFF1408 0.49 -1.3
52,846 - GFF1408 0.49 +0.7
52,846 - GFF1408 0.49 -0.5
52,846 - GFF1408 0.49 +0.3
52,846 - GFF1408 0.49 +0.6
52,846 - GFF1408 0.49 -1.0
52,846 - GFF1408 0.49 +0.0
52,846 - GFF1408 0.49 +0.0
52,849 + GFF1408 0.49 -0.8
52,849 + GFF1408 0.49 -1.3
52,849 + GFF1408 0.49 +1.0
52,849 + GFF1408 0.49 +0.0
52,849 + GFF1408 0.49 -0.4
52,849 + GFF1408 0.49 -0.1
52,849 + GFF1408 0.49 -0.2
52,850 - GFF1408 0.50 -1.6
52,850 - GFF1408 0.50 -1.0
52,906 + GFF1408 0.53 -0.2
52,907 - GFF1408 0.53 +0.1
52,907 - GFF1408 0.53 -0.2
52,927 + GFF1408 0.54 +0.1
52,928 - GFF1408 0.54 -0.9
52,928 - GFF1408 0.54 +0.2
52,928 - GFF1408 0.54 -1.0
52,928 - GFF1408 0.54 +0.5
53,017 + GFF1408 0.59 -1.3
53,025 + GFF1408 0.60 -0.8
53,026 - GFF1408 0.60 -1.2
53,108 - GFF1408 0.65 -0.3
53,144 - GFF1408 0.67 -2.2
53,159 + GFF1408 0.67 -0.4
53,159 + GFF1408 0.67 -1.2
53,160 - GFF1408 0.68 -0.5
53,160 - GFF1408 0.68 -0.4
53,160 - GFF1408 0.68 -1.3
53,160 - GFF1408 0.68 +0.2
53,309 - GFF1408 0.76 +0.0
53,381 + GFF1408 0.80 -0.4
53,382 - GFF1408 0.80 -2.1
53,400 + GFF1408 0.82 +0.2
53,401 - GFF1408 0.82 +0.0
53,401 - GFF1408 0.82 +0.3
53,401 - GFF1408 0.82 -1.1
53,403 + GFF1408 0.82 -1.8
53,457 + GFF1408 0.85 -1.2
53,458 - GFF1408 0.85 +0.0
53,458 - GFF1408 0.85 -1.2
53,458 - GFF1408 0.85 -0.1
53,470 - GFF1408 0.86 -0.6
53,470 - GFF1408 0.86 +0.0
53,537 - GFF1408 0.89 -1.5
53,541 - GFF1408 0.90 -0.6
53,608 - +0.5
53,675 + -0.2
53,676 - -0.9
53,676 - +0.6
53,708 + +0.1
53,709 - +0.0
53,720 + -1.6
53,721 - -1.0
53,721 - +0.3
53,721 - +0.7
53,797 + GFF1409 0.21 -0.2
53,797 + GFF1409 0.21 -2.3
53,798 - GFF1409 0.22 -1.3
53,799 + GFF1409 0.22 -0.6
53,799 + GFF1409 0.22 -1.4
53,799 + GFF1409 0.22 -0.8
53,799 + GFF1409 0.22 -1.4
53,799 + GFF1409 0.22 +0.6
53,800 - GFF1409 0.22 -0.6
54,064 + GFF1409 0.81 -1.1
54,121 + -0.9
54,121 + -1.2
54,122 - -1.6
54,214 + -0.2
54,215 - -0.3
54,216 + -1.3
54,217 - -1.0
54,222 + -0.8
54,223 + -0.3
54,223 + +0.0
54,224 - +0.2
54,232 + +0.0
54,233 - -1.3
54,252 + -1.2
54,275 + -0.2
54,276 - -1.6
54,285 + -0.7
54,384 + +0.0
54,447 + GFF1410 0.11 +0.4
54,448 - GFF1410 0.11 +0.0
54,553 + GFF1410 0.16 -0.2
54,554 - GFF1410 0.16 -0.6
54,558 + GFF1410 0.17 -0.3
54,654 + GFF1410 0.22 -0.3
54,655 - GFF1410 0.22 -1.8
54,655 - GFF1410 0.22 -0.6
54,731 + GFF1410 0.26 -1.3
54,773 + GFF1410 0.28 -1.3
54,854 + GFF1410 0.33 -0.6
54,855 - GFF1410 0.33 -1.6
54,855 - GFF1410 0.33 +0.0
54,877 - GFF1410 0.34 -1.0
54,891 + GFF1410 0.35 -0.9

Or see this region's nucleotide sequence