Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1348 and GFF1349 are separated by 44 nucleotides GFF1349 and GFF1350 are separated by 30 nucleotides GFF1350 and GFF1351 are separated by 12 nucleotides GFF1351 and GFF1352 are separated by 90 nucleotides
GFF1348 - hypothetical protein, at 613,438 to 613,980
GFF1348
GFF1349 - Phosphate regulon transcriptional regulatory protein PhoB, at 614,025 to 614,393
GFF1349
GFF1350 - hypothetical protein, at 614,424 to 616,838
GFF1350
GFF1351 - Chemotaxis protein CheW, at 616,851 to 617,366
GFF1351
GFF1352 - hypothetical protein, at 617,457 to 620,066
GFF1352
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.428 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.429 kb on - strand at 613.429 kb on - strand at 613.429 kb on - strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.455 kb on - strand at 613.463 kb on + strand at 613.463 kb on + strand at 613.463 kb on + strand at 613.464 kb on - strand at 613.464 kb on - strand at 613.464 kb on - strand at 613.472 kb on + strand at 613.472 kb on + strand at 613.594 kb on + strand, within GFF1348 at 613.594 kb on + strand, within GFF1348 at 613.594 kb on + strand, within GFF1348 at 613.594 kb on + strand, within GFF1348 at 613.595 kb on - strand, within GFF1348 at 613.595 kb on - strand, within GFF1348 at 613.595 kb on - strand, within GFF1348 at 613.595 kb on - strand, within GFF1348 at 613.595 kb on - strand, within GFF1348 at 613.604 kb on + strand, within GFF1348 at 613.631 kb on + strand, within GFF1348 at 613.696 kb on - strand, within GFF1348 at 613.790 kb on + strand, within GFF1348 at 613.802 kb on + strand, within GFF1348 at 613.802 kb on + strand, within GFF1348 at 613.802 kb on + strand, within GFF1348 at 613.802 kb on + strand, within GFF1348 at 613.803 kb on - strand, within GFF1348 at 613.803 kb on - strand, within GFF1348 at 613.812 kb on - strand, within GFF1348 at 613.974 kb on - strand at 613.978 kb on + strand at 614.041 kb on + strand at 614.041 kb on + strand at 614.048 kb on - strand at 614.103 kb on + strand, within GFF1349 at 614.104 kb on - strand, within GFF1349 at 614.113 kb on + strand, within GFF1349 at 614.114 kb on - strand, within GFF1349 at 614.231 kb on + strand, within GFF1349 at 614.231 kb on + strand, within GFF1349 at 614.232 kb on - strand, within GFF1349 at 614.245 kb on - strand, within GFF1349 at 614.258 kb on + strand, within GFF1349 at 614.371 kb on + strand at 614.371 kb on + strand at 614.380 kb on + strand at 614.391 kb on + strand at 614.436 kb on - strand at 614.448 kb on + strand at 614.479 kb on + strand at 614.479 kb on + strand at 614.479 kb on + strand at 614.479 kb on + strand at 614.518 kb on + strand at 614.519 kb on - strand at 614.519 kb on - strand at 614.738 kb on + strand, within GFF1350 at 614.738 kb on + strand, within GFF1350 at 614.738 kb on + strand, within GFF1350 at 614.738 kb on + strand, within GFF1350 at 614.738 kb on + strand, within GFF1350 at 614.739 kb on - strand, within GFF1350 at 614.739 kb on - strand, within GFF1350 at 614.739 kb on - strand, within GFF1350 at 614.755 kb on + strand, within GFF1350 at 614.755 kb on + strand, within GFF1350 at 614.756 kb on - strand, within GFF1350 at 614.756 kb on - strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.935 kb on + strand, within GFF1350 at 614.936 kb on - strand, within GFF1350 at 614.936 kb on - strand, within GFF1350 at 614.936 kb on - strand, within GFF1350 at 614.936 kb on - strand, within GFF1350 at 614.937 kb on + strand, within GFF1350 at 614.937 kb on + strand, within GFF1350 at 614.937 kb on + strand, within GFF1350 at 614.937 kb on + strand, within GFF1350 at 614.937 kb on + strand, within GFF1350 at 614.937 kb on + strand, within GFF1350 at 614.938 kb on - strand, within GFF1350 at 614.938 kb on - strand, within GFF1350 at 614.938 kb on - strand, within GFF1350 at 614.938 kb on - strand, within GFF1350 at 614.995 kb on + strand, within GFF1350 at 614.996 kb on - strand, within GFF1350 at 614.996 kb on - strand, within GFF1350 at 615.004 kb on + strand, within GFF1350 at 615.004 kb on + strand, within GFF1350 at 615.005 kb on - strand, within GFF1350 at 615.106 kb on + strand, within GFF1350 at 615.106 kb on + strand, within GFF1350 at 615.107 kb on - strand, within GFF1350 at 615.357 kb on + strand, within GFF1350 at 615.377 kb on + strand, within GFF1350 at 615.378 kb on - strand, within GFF1350 at 615.378 kb on - strand, within GFF1350 at 615.467 kb on + strand, within GFF1350 at 615.467 kb on + strand, within GFF1350 at 615.646 kb on + strand, within GFF1350 at 615.650 kb on + strand, within GFF1350 at 615.650 kb on + strand, within GFF1350 at 615.650 kb on + strand, within GFF1350 at 615.651 kb on - strand, within GFF1350 at 615.675 kb on - strand, within GFF1350 at 615.701 kb on + strand, within GFF1350 at 615.738 kb on - strand, within GFF1350 at 615.738 kb on - strand, within GFF1350 at 615.740 kb on + strand, within GFF1350 at 615.740 kb on + strand, within GFF1350 at 615.740 kb on + strand, within GFF1350 at 615.741 kb on - strand, within GFF1350 at 615.839 kb on + strand, within GFF1350 at 615.970 kb on + strand, within GFF1350 at 615.970 kb on + strand, within GFF1350 at 615.970 kb on + strand, within GFF1350 at 616.001 kb on + strand, within GFF1350 at 616.009 kb on + strand, within GFF1350 at 616.009 kb on + strand, within GFF1350 at 616.178 kb on + strand, within GFF1350 at 616.179 kb on - strand, within GFF1350 at 616.268 kb on + strand, within GFF1350 at 616.289 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.395 kb on + strand, within GFF1350 at 616.396 kb on - strand, within GFF1350 at 616.396 kb on - strand, within GFF1350 at 616.396 kb on - strand, within GFF1350 at 616.497 kb on + strand, within GFF1350 at 616.497 kb on + strand, within GFF1350 at 616.497 kb on + strand, within GFF1350 at 616.497 kb on + strand, within GFF1350 at 616.498 kb on - strand, within GFF1350 at 616.613 kb on - strand at 616.770 kb on + strand at 616.770 kb on + strand at 616.770 kb on + strand at 616.771 kb on - strand at 616.771 kb on - strand at 616.806 kb on + strand at 616.807 kb on - strand at 616.807 kb on - strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.826 kb on + strand at 616.827 kb on - strand at 616.827 kb on - strand at 616.836 kb on + strand at 616.843 kb on + strand at 616.843 kb on + strand at 616.843 kb on + strand at 616.843 kb on + strand at 616.844 kb on - strand at 616.844 kb on - strand at 616.844 kb on - strand at 616.844 kb on - strand at 616.844 kb on - strand at 616.844 kb on - strand at 616.844 kb on - strand at 616.845 kb on + strand at 616.845 kb on + strand at 616.845 kb on + strand at 616.845 kb on + strand at 616.846 kb on - strand at 616.846 kb on - strand at 616.856 kb on + strand at 616.857 kb on - strand at 616.871 kb on - strand at 616.877 kb on + strand at 616.877 kb on + strand at 616.877 kb on + strand at 616.877 kb on + strand at 616.877 kb on + strand at 616.877 kb on + strand at 616.878 kb on - strand at 616.878 kb on - strand at 616.889 kb on + strand at 616.889 kb on + strand at 616.890 kb on - strand at 616.957 kb on - strand, within GFF1351 at 617.083 kb on + strand, within GFF1351 at 617.083 kb on + strand, within GFF1351 at 617.083 kb on + strand, within GFF1351 at 617.084 kb on - strand, within GFF1351 at 617.084 kb on - strand, within GFF1351 at 617.084 kb on - strand, within GFF1351 at 617.084 kb on - strand, within GFF1351 at 617.087 kb on + strand, within GFF1351 at 617.087 kb on + strand, within GFF1351 at 617.087 kb on + strand, within GFF1351 at 617.087 kb on + strand, within GFF1351 at 617.088 kb on - strand, within GFF1351 at 617.115 kb on + strand, within GFF1351 at 617.116 kb on - strand, within GFF1351 at 617.126 kb on + strand, within GFF1351 at 617.126 kb on + strand, within GFF1351 at 617.259 kb on + strand, within GFF1351 at 617.259 kb on + strand, within GFF1351 at 617.259 kb on + strand, within GFF1351 at 617.260 kb on - strand, within GFF1351 at 617.260 kb on - strand, within GFF1351 at 617.260 kb on - strand, within GFF1351 at 617.260 kb on - strand, within GFF1351 at 617.365 kb on - strand at 617.369 kb on - strand at 617.384 kb on - strand at 617.399 kb on + strand at 617.399 kb on + strand at 617.399 kb on + strand at 617.399 kb on + strand at 617.400 kb on - strand at 617.400 kb on - strand at 617.403 kb on + strand at 617.404 kb on - strand at 617.404 kb on - strand at 617.404 kb on - strand at 617.404 kb on - strand at 617.408 kb on + strand at 617.429 kb on + strand at 617.429 kb on + strand at 617.637 kb on + strand at 617.710 kb on - strand at 617.731 kb on + strand, within GFF1352 at 617.808 kb on + strand, within GFF1352 at 617.808 kb on + strand, within GFF1352 at 617.808 kb on + strand, within GFF1352 at 617.809 kb on - strand, within GFF1352 at 617.809 kb on - strand, within GFF1352
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 613,428 + +0.5 613,428 + -0.4 613,428 + -1.7 613,428 + -2.0 613,428 + -0.9 613,428 + +0.2 613,429 - -1.5 613,429 - +0.3 613,429 - -0.9 613,437 + -1.1 613,437 + -0.3 613,455 - -1.0 613,463 + -0.5 613,463 + +0.0 613,463 + -1.0 613,464 - -2.8 613,464 - -1.7 613,464 - -1.0 613,472 + -1.7 613,472 + +0.0 613,594 + GFF1348 0.29 -1.0 613,594 + GFF1348 0.29 -1.0 613,594 + GFF1348 0.29 -0.3 613,594 + GFF1348 0.29 +0.3 613,595 - GFF1348 0.29 -0.7 613,595 - GFF1348 0.29 -1.0 613,595 - GFF1348 0.29 -0.1 613,595 - GFF1348 0.29 +0.4 613,595 - GFF1348 0.29 -0.6 613,604 + GFF1348 0.31 -1.2 613,631 + GFF1348 0.36 -0.3 613,696 - GFF1348 0.48 -0.3 613,790 + GFF1348 0.65 -0.1 613,802 + GFF1348 0.67 +0.0 613,802 + GFF1348 0.67 -1.1 613,802 + GFF1348 0.67 +0.4 613,802 + GFF1348 0.67 -0.7 613,803 - GFF1348 0.67 -1.7 613,803 - GFF1348 0.67 -1.5 613,812 - GFF1348 0.69 -1.7 613,974 - -0.7 613,978 + -0.7 614,041 + +0.2 614,041 + +0.4 614,048 - -0.5 614,103 + GFF1349 0.21 -0.4 614,104 - GFF1349 0.21 -1.1 614,113 + GFF1349 0.24 +0.5 614,114 - GFF1349 0.24 +0.1 614,231 + GFF1349 0.56 -0.5 614,231 + GFF1349 0.56 -1.1 614,232 - GFF1349 0.56 +0.4 614,245 - GFF1349 0.60 -1.6 614,258 + GFF1349 0.63 -1.1 614,371 + -0.3 614,371 + +0.6 614,380 + -0.1 614,391 + -2.5 614,436 - -2.7 614,448 + +0.4 614,479 + -1.7 614,479 + -1.0 614,479 + +0.5 614,479 + -1.2 614,518 + -0.9 614,519 - -1.2 614,519 - -0.1 614,738 + GFF1350 0.13 -1.7 614,738 + GFF1350 0.13 -0.5 614,738 + GFF1350 0.13 -1.1 614,738 + GFF1350 0.13 +0.9 614,738 + GFF1350 0.13 -0.8 614,739 - GFF1350 0.13 -1.1 614,739 - GFF1350 0.13 -1.2 614,739 - GFF1350 0.13 +0.5 614,755 + GFF1350 0.14 -0.3 614,755 + GFF1350 0.14 -1.2 614,756 - GFF1350 0.14 -0.4 614,756 - GFF1350 0.14 -0.7 614,935 + GFF1350 0.21 -3.6 614,935 + GFF1350 0.21 -0.1 614,935 + GFF1350 0.21 -2.8 614,935 + GFF1350 0.21 -0.7 614,935 + GFF1350 0.21 -2.1 614,935 + GFF1350 0.21 -0.9 614,935 + GFF1350 0.21 -0.1 614,935 + GFF1350 0.21 -1.1 614,935 + GFF1350 0.21 -1.7 614,935 + GFF1350 0.21 -0.7 614,936 - GFF1350 0.21 -0.1 614,936 - GFF1350 0.21 -0.1 614,936 - GFF1350 0.21 -1.5 614,936 - GFF1350 0.21 -2.3 614,937 + GFF1350 0.21 -1.3 614,937 + GFF1350 0.21 -1.0 614,937 + GFF1350 0.21 -0.1 614,937 + GFF1350 0.21 -2.2 614,937 + GFF1350 0.21 +0.4 614,937 + GFF1350 0.21 -1.0 614,938 - GFF1350 0.21 +0.6 614,938 - GFF1350 0.21 -0.7 614,938 - GFF1350 0.21 -0.1 614,938 - GFF1350 0.21 -0.1 614,995 + GFF1350 0.24 +0.0 614,996 - GFF1350 0.24 -0.1 614,996 - GFF1350 0.24 -0.3 615,004 + GFF1350 0.24 -2.0 615,004 + GFF1350 0.24 -0.4 615,005 - GFF1350 0.24 -0.6 615,106 + GFF1350 0.28 -1.5 615,106 + GFF1350 0.28 -2.6 615,107 - GFF1350 0.28 -0.1 615,357 + GFF1350 0.39 -0.8 615,377 + GFF1350 0.39 -0.7 615,378 - GFF1350 0.40 -1.3 615,378 - GFF1350 0.40 -1.7 615,467 + GFF1350 0.43 -0.8 615,467 + GFF1350 0.43 +0.5 615,646 + GFF1350 0.51 -1.1 615,650 + GFF1350 0.51 -1.1 615,650 + GFF1350 0.51 -0.5 615,650 + GFF1350 0.51 -0.3 615,651 - GFF1350 0.51 +0.4 615,675 - GFF1350 0.52 -0.8 615,701 + GFF1350 0.53 -2.5 615,738 - GFF1350 0.54 -1.5 615,738 - GFF1350 0.54 -2.3 615,740 + GFF1350 0.54 -0.1 615,740 + GFF1350 0.54 -1.0 615,740 + GFF1350 0.54 -1.5 615,741 - GFF1350 0.55 -1.8 615,839 + GFF1350 0.59 +0.9 615,970 + GFF1350 0.64 -2.1 615,970 + GFF1350 0.64 -2.3 615,970 + GFF1350 0.64 -0.1 616,001 + GFF1350 0.65 -1.1 616,009 + GFF1350 0.66 -1.2 616,009 + GFF1350 0.66 -1.1 616,178 + GFF1350 0.73 -1.7 616,179 - GFF1350 0.73 -1.1 616,268 + GFF1350 0.76 -1.1 616,289 + GFF1350 0.77 -0.1 616,395 + GFF1350 0.82 -1.3 616,395 + GFF1350 0.82 -1.5 616,395 + GFF1350 0.82 -1.6 616,395 + GFF1350 0.82 -1.0 616,395 + GFF1350 0.82 -1.0 616,395 + GFF1350 0.82 -2.0 616,395 + GFF1350 0.82 -2.1 616,396 - GFF1350 0.82 -1.1 616,396 - GFF1350 0.82 -1.0 616,396 - GFF1350 0.82 -1.0 616,497 + GFF1350 0.86 -1.7 616,497 + GFF1350 0.86 -1.4 616,497 + GFF1350 0.86 -0.8 616,497 + GFF1350 0.86 -1.7 616,498 - GFF1350 0.86 -1.5 616,613 - -1.1 616,770 + -1.5 616,770 + -1.1 616,770 + -0.7 616,771 - -1.6 616,771 - +0.4 616,806 + -0.5 616,807 - -1.0 616,807 - -1.0 616,826 + -2.5 616,826 + +0.9 616,826 + -2.4 616,826 + -1.3 616,826 + +0.4 616,826 + +0.6 616,826 + -1.1 616,826 + -1.5 616,827 - +0.6 616,827 - -2.5 616,836 + -2.0 616,843 + -0.9 616,843 + -0.5 616,843 + -1.1 616,843 + -0.1 616,844 - +0.4 616,844 - -0.7 616,844 - -1.5 616,844 - +1.2 616,844 - -0.1 616,844 - -1.7 616,844 - +0.1 616,845 + -0.8 616,845 + -0.3 616,845 + +0.9 616,845 + +0.6 616,846 - -1.5 616,846 - -1.5 616,856 + -0.5 616,857 - +0.1 616,871 - -0.3 616,877 + -0.9 616,877 + -0.4 616,877 + +0.2 616,877 + -0.7 616,877 + -0.4 616,877 + +0.2 616,878 - -0.5 616,878 - -1.6 616,889 + +0.3 616,889 + -0.3 616,890 - -0.5 616,957 - GFF1351 0.21 -1.3 617,083 + GFF1351 0.45 -0.6 617,083 + GFF1351 0.45 -1.1 617,083 + GFF1351 0.45 -0.7 617,084 - GFF1351 0.45 -0.1 617,084 - GFF1351 0.45 +0.0 617,084 - GFF1351 0.45 -0.5 617,084 - GFF1351 0.45 -0.9 617,087 + GFF1351 0.46 +0.3 617,087 + GFF1351 0.46 -0.2 617,087 + GFF1351 0.46 -0.9 617,087 + GFF1351 0.46 -0.1 617,088 - GFF1351 0.46 -0.2 617,115 + GFF1351 0.51 -1.6 617,116 - GFF1351 0.51 +0.4 617,126 + GFF1351 0.53 +0.5 617,126 + GFF1351 0.53 -0.1 617,259 + GFF1351 0.79 -0.7 617,259 + GFF1351 0.79 -0.4 617,259 + GFF1351 0.79 -1.3 617,260 - GFF1351 0.79 +0.9 617,260 - GFF1351 0.79 -1.5 617,260 - GFF1351 0.79 -1.5 617,260 - GFF1351 0.79 -1.5 617,365 - +0.7 617,369 - -0.7 617,384 - -0.7 617,399 + -0.1 617,399 + -0.4 617,399 + -0.7 617,399 + -1.5 617,400 - -0.1 617,400 - -0.3 617,403 + +0.6 617,404 - -0.7 617,404 - +0.6 617,404 - -1.8 617,404 - +1.2 617,408 + +0.5 617,429 + -1.1 617,429 + +0.9 617,637 + -0.6 617,710 - +0.9 617,731 + GFF1352 0.10 +0.5 617,808 + GFF1352 0.13 -0.5 617,808 + GFF1352 0.13 -1.1 617,808 + GFF1352 0.13 -0.6 617,809 - GFF1352 0.13 +0.6 617,809 - GFF1352 0.13 +0.9
Or see this region's nucleotide sequence