Strain Fitness in Methylophilus sp. DMC18 around GFF1296

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1295 and GFF1296 are separated by 16 nucleotidesGFF1296 and GFF1297 are separated by 20 nucleotides GFF1295 - Aminodeoxychorismate synthase component 1, at 553,081 to 554,565 GFF1295 GFF1296 - hypothetical protein, at 554,582 to 555,247 GFF1296 GFF1297 - Cobalt-zinc-cadmium resistance protein CzcA, at 555,268 to 558,399 GFF1297 Position (kb) 554 555 556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.608 kb on - strand, within GFF1295at 553.608 kb on - strand, within GFF1295at 553.612 kb on + strand, within GFF1295at 553.613 kb on - strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.682 kb on + strand, within GFF1295at 553.682 kb on + strand, within GFF1295at 553.682 kb on + strand, within GFF1295at 553.732 kb on + strand, within GFF1295at 553.746 kb on + strand, within GFF1295at 553.746 kb on + strand, within GFF1295at 553.746 kb on + strand, within GFF1295at 553.747 kb on - strand, within GFF1295at 553.784 kb on - strand, within GFF1295at 553.843 kb on + strand, within GFF1295at 553.843 kb on + strand, within GFF1295at 553.878 kb on + strand, within GFF1295at 553.878 kb on + strand, within GFF1295at 554.058 kb on + strand, within GFF1295at 554.058 kb on + strand, within GFF1295at 554.058 kb on + strand, within GFF1295at 554.172 kb on + strand, within GFF1295at 554.173 kb on - strand, within GFF1295at 554.305 kb on - strand, within GFF1295at 554.338 kb on + strand, within GFF1295at 554.339 kb on - strand, within GFF1295at 554.357 kb on - strand, within GFF1295at 554.376 kb on + strand, within GFF1295at 554.376 kb on + strand, within GFF1295at 554.376 kb on + strand, within GFF1295at 554.376 kb on + strand, within GFF1295at 554.376 kb on + strand, within GFF1295at 554.377 kb on - strand, within GFF1295at 554.377 kb on - strand, within GFF1295at 554.382 kb on + strand, within GFF1295at 554.388 kb on + strand, within GFF1295at 554.389 kb on - strand, within GFF1295at 554.479 kb on + strandat 554.532 kb on + strandat 554.532 kb on + strandat 554.532 kb on + strandat 554.532 kb on + strandat 554.532 kb on + strandat 554.563 kb on + strandat 554.563 kb on + strandat 554.563 kb on + strandat 554.563 kb on + strandat 554.564 kb on - strandat 554.668 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.699 kb on + strand, within GFF1296at 554.700 kb on - strand, within GFF1296at 554.755 kb on + strand, within GFF1296at 554.755 kb on + strand, within GFF1296at 554.755 kb on + strand, within GFF1296at 554.755 kb on + strand, within GFF1296at 554.756 kb on - strand, within GFF1296at 554.756 kb on - strand, within GFF1296at 554.820 kb on + strand, within GFF1296at 554.821 kb on - strand, within GFF1296at 554.922 kb on + strand, within GFF1296at 554.922 kb on + strand, within GFF1296at 555.060 kb on + strand, within GFF1296at 555.060 kb on + strand, within GFF1296at 555.105 kb on + strand, within GFF1296at 555.105 kb on + strand, within GFF1296at 555.105 kb on + strand, within GFF1296at 555.118 kb on + strand, within GFF1296at 555.119 kb on - strand, within GFF1296at 555.119 kb on - strand, within GFF1296at 555.173 kb on + strand, within GFF1296at 555.173 kb on + strand, within GFF1296at 555.174 kb on - strand, within GFF1296at 555.174 kb on - strand, within GFF1296at 555.232 kb on + strandat 555.245 kb on + strandat 555.246 kb on - strandat 555.257 kb on - strandat 555.270 kb on - strandat 555.270 kb on - strandat 555.333 kb on + strandat 555.334 kb on - strandat 555.334 kb on - strandat 555.334 kb on - strandat 555.366 kb on + strandat 555.367 kb on - strandat 555.367 kb on - strandat 555.367 kb on - strandat 555.430 kb on + strandat 555.431 kb on - strandat 555.436 kb on + strandat 555.437 kb on - strandat 555.691 kb on + strand, within GFF1297at 555.691 kb on + strand, within GFF1297at 555.691 kb on + strand, within GFF1297at 555.702 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.725 kb on + strand, within GFF1297at 555.726 kb on - strand, within GFF1297at 555.726 kb on - strand, within GFF1297at 555.726 kb on - strand, within GFF1297at 555.726 kb on - strand, within GFF1297at 555.726 kb on - strand, within GFF1297at 555.726 kb on - strand, within GFF1297at 555.727 kb on + strand, within GFF1297at 555.727 kb on + strand, within GFF1297at 555.727 kb on + strand, within GFF1297at 555.727 kb on + strand, within GFF1297at 555.727 kb on + strand, within GFF1297at 555.727 kb on + strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.728 kb on - strand, within GFF1297at 555.772 kb on + strand, within GFF1297at 555.772 kb on + strand, within GFF1297at 555.773 kb on - strand, within GFF1297at 555.773 kb on - strand, within GFF1297at 555.773 kb on - strand, within GFF1297at 555.773 kb on - strand, within GFF1297at 555.773 kb on - strand, within GFF1297at 555.824 kb on + strand, within GFF1297at 555.825 kb on - strand, within GFF1297at 555.825 kb on - strand, within GFF1297at 555.825 kb on - strand, within GFF1297at 555.825 kb on - strand, within GFF1297at 555.856 kb on + strand, within GFF1297at 555.857 kb on - strand, within GFF1297at 555.857 kb on - strand, within GFF1297at 555.868 kb on + strand, within GFF1297at 555.868 kb on + strand, within GFF1297at 555.869 kb on - strand, within GFF1297at 555.869 kb on - strand, within GFF1297at 555.869 kb on - strand, within GFF1297at 555.980 kb on + strand, within GFF1297at 555.980 kb on + strand, within GFF1297at 555.980 kb on + strand, within GFF1297at 556.109 kb on + strand, within GFF1297at 556.109 kb on + strand, within GFF1297at 556.136 kb on + strand, within GFF1297at 556.136 kb on + strand, within GFF1297at 556.167 kb on + strand, within GFF1297at 556.168 kb on - strand, within GFF1297at 556.168 kb on - strand, within GFF1297

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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553,607 + GFF1295 0.35 -0.7
553,607 + GFF1295 0.35 +1.2
553,607 + GFF1295 0.35 -0.1
553,607 + GFF1295 0.35 -0.1
553,607 + GFF1295 0.35 -1.5
553,608 - GFF1295 0.35 +0.3
553,608 - GFF1295 0.35 -2.5
553,612 + GFF1295 0.36 -2.3
553,613 - GFF1295 0.36 -1.1
553,677 + GFF1295 0.40 -1.5
553,677 + GFF1295 0.40 -2.0
553,677 + GFF1295 0.40 +0.3
553,677 + GFF1295 0.40 +0.9
553,682 + GFF1295 0.40 -0.1
553,682 + GFF1295 0.40 -0.5
553,682 + GFF1295 0.40 -0.9
553,732 + GFF1295 0.44 -0.2
553,746 + GFF1295 0.45 -1.0
553,746 + GFF1295 0.45 -0.1
553,746 + GFF1295 0.45 -0.5
553,747 - GFF1295 0.45 -0.5
553,784 - GFF1295 0.47 -0.1
553,843 + GFF1295 0.51 -1.7
553,843 + GFF1295 0.51 -0.7
553,878 + GFF1295 0.54 -0.4
553,878 + GFF1295 0.54 -0.0
554,058 + GFF1295 0.66 +0.4
554,058 + GFF1295 0.66 -0.6
554,058 + GFF1295 0.66 -1.6
554,172 + GFF1295 0.73 +0.0
554,173 - GFF1295 0.74 -0.3
554,305 - GFF1295 0.82 -1.9
554,338 + GFF1295 0.85 +0.9
554,339 - GFF1295 0.85 -1.7
554,357 - GFF1295 0.86 -0.6
554,376 + GFF1295 0.87 -0.8
554,376 + GFF1295 0.87 -0.6
554,376 + GFF1295 0.87 -2.5
554,376 + GFF1295 0.87 -1.1
554,376 + GFF1295 0.87 +0.3
554,377 - GFF1295 0.87 +0.9
554,377 - GFF1295 0.87 -1.5
554,382 + GFF1295 0.88 -2.0
554,388 + GFF1295 0.88 -0.1
554,389 - GFF1295 0.88 -0.1
554,479 + -0.6
554,532 + -1.8
554,532 + -1.8
554,532 + -1.1
554,532 + -2.3
554,532 + +0.2
554,563 + -0.5
554,563 + -1.1
554,563 + -1.0
554,563 + -1.1
554,564 - -1.5
554,668 + GFF1296 0.13 -2.0
554,699 + GFF1296 0.18 -2.1
554,699 + GFF1296 0.18 -2.6
554,699 + GFF1296 0.18 -0.5
554,699 + GFF1296 0.18 -0.4
554,699 + GFF1296 0.18 -1.9
554,699 + GFF1296 0.18 -0.5
554,699 + GFF1296 0.18 -1.7
554,699 + GFF1296 0.18 -1.5
554,699 + GFF1296 0.18 -0.1
554,700 - GFF1296 0.18 -0.1
554,755 + GFF1296 0.26 -1.0
554,755 + GFF1296 0.26 -2.3
554,755 + GFF1296 0.26 +0.2
554,755 + GFF1296 0.26 -1.0
554,756 - GFF1296 0.26 -2.3
554,756 - GFF1296 0.26 -1.5
554,820 + GFF1296 0.36 -0.1
554,821 - GFF1296 0.36 -2.3
554,922 + GFF1296 0.51 -2.0
554,922 + GFF1296 0.51 -2.0
555,060 + GFF1296 0.72 -0.5
555,060 + GFF1296 0.72 -0.6
555,105 + GFF1296 0.79 -0.1
555,105 + GFF1296 0.79 -2.6
555,105 + GFF1296 0.79 -1.5
555,118 + GFF1296 0.80 -1.5
555,119 - GFF1296 0.81 -1.5
555,119 - GFF1296 0.81 -1.3
555,173 + GFF1296 0.89 -1.8
555,173 + GFF1296 0.89 -1.1
555,174 - GFF1296 0.89 -1.5
555,174 - GFF1296 0.89 -3.8
555,232 + -1.0
555,245 + -0.7
555,246 - -0.1
555,257 - +0.1
555,270 - +0.3
555,270 - -0.2
555,333 + -0.3
555,334 - +0.2
555,334 - -0.5
555,334 - -1.0
555,366 + -0.7
555,367 - +0.9
555,367 - -0.8
555,367 - -0.7
555,430 + -1.1
555,431 - -0.8
555,436 + -1.7
555,437 - -1.5
555,691 + GFF1297 0.14 -0.1
555,691 + GFF1297 0.14 -0.1
555,691 + GFF1297 0.14 +0.0
555,702 + GFF1297 0.14 -1.1
555,725 + GFF1297 0.15 -0.9
555,725 + GFF1297 0.15 -0.1
555,725 + GFF1297 0.15 -0.1
555,725 + GFF1297 0.15 -0.6
555,725 + GFF1297 0.15 -2.0
555,725 + GFF1297 0.15 -0.5
555,725 + GFF1297 0.15 -1.5
555,725 + GFF1297 0.15 -1.1
555,725 + GFF1297 0.15 -0.5
555,725 + GFF1297 0.15 +0.4
555,726 - GFF1297 0.15 -0.4
555,726 - GFF1297 0.15 -1.5
555,726 - GFF1297 0.15 +0.3
555,726 - GFF1297 0.15 +0.4
555,726 - GFF1297 0.15 -0.5
555,726 - GFF1297 0.15 -1.0
555,727 + GFF1297 0.15 -0.8
555,727 + GFF1297 0.15 -0.7
555,727 + GFF1297 0.15 -0.7
555,727 + GFF1297 0.15 -1.0
555,727 + GFF1297 0.15 -1.3
555,727 + GFF1297 0.15 -1.5
555,728 - GFF1297 0.15 -0.1
555,728 - GFF1297 0.15 -1.2
555,728 - GFF1297 0.15 -1.0
555,728 - GFF1297 0.15 -0.3
555,728 - GFF1297 0.15 -1.4
555,728 - GFF1297 0.15 +0.4
555,728 - GFF1297 0.15 -1.5
555,728 - GFF1297 0.15 -0.9
555,772 + GFF1297 0.16 -1.1
555,772 + GFF1297 0.16 -1.3
555,773 - GFF1297 0.16 -1.0
555,773 - GFF1297 0.16 -0.5
555,773 - GFF1297 0.16 +0.9
555,773 - GFF1297 0.16 -1.7
555,773 - GFF1297 0.16 +1.4
555,824 + GFF1297 0.18 +0.4
555,825 - GFF1297 0.18 -1.3
555,825 - GFF1297 0.18 -1.5
555,825 - GFF1297 0.18 -1.4
555,825 - GFF1297 0.18 -0.5
555,856 + GFF1297 0.19 -0.1
555,857 - GFF1297 0.19 +1.1
555,857 - GFF1297 0.19 +0.9
555,868 + GFF1297 0.19 -0.5
555,868 + GFF1297 0.19 +1.3
555,869 - GFF1297 0.19 -0.5
555,869 - GFF1297 0.19 -0.1
555,869 - GFF1297 0.19 -0.6
555,980 + GFF1297 0.23 -0.8
555,980 + GFF1297 0.23 -0.6
555,980 + GFF1297 0.23 -0.7
556,109 + GFF1297 0.27 +0.0
556,109 + GFF1297 0.27 -0.9
556,136 + GFF1297 0.28 -0.5
556,136 + GFF1297 0.28 -0.4
556,167 + GFF1297 0.29 -0.1
556,168 - GFF1297 0.29 +0.9
556,168 - GFF1297 0.29 -1.5

Or see this region's nucleotide sequence