Strain Fitness in Methylophilus sp. DMC18 around GFF1294

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1293 and GFF1294 overlap by 14 nucleotidesGFF1294 and GFF1295 overlap by 43 nucleotides GFF1293 - hypothetical protein, at 551,008 to 552,084 GFF1293 GFF1294 - hypothetical protein, at 552,071 to 553,123 GFF1294 GFF1295 - Aminodeoxychorismate synthase component 1, at 553,081 to 554,565 GFF1295 Position (kb) 552 553 554Strain fitness (log2 ratio) -3 -2 -1 0 1at 551.160 kb on + strand, within GFF1293at 551.160 kb on + strand, within GFF1293at 551.161 kb on - strand, within GFF1293at 551.161 kb on - strand, within GFF1293at 551.161 kb on - strand, within GFF1293at 551.349 kb on + strand, within GFF1293at 551.379 kb on + strand, within GFF1293at 551.495 kb on - strand, within GFF1293at 551.560 kb on + strand, within GFF1293at 551.606 kb on + strand, within GFF1293at 551.653 kb on + strand, within GFF1293at 551.653 kb on + strand, within GFF1293at 551.653 kb on + strand, within GFF1293at 551.654 kb on - strand, within GFF1293at 551.935 kb on + strand, within GFF1293at 551.935 kb on + strand, within GFF1293at 551.935 kb on + strand, within GFF1293at 551.938 kb on - strand, within GFF1293at 551.993 kb on + strandat 551.994 kb on - strandat 551.996 kb on + strandat 552.008 kb on + strandat 552.070 kb on + strandat 552.083 kb on - strandat 552.104 kb on - strandat 552.183 kb on + strand, within GFF1294at 552.217 kb on + strand, within GFF1294at 552.217 kb on + strand, within GFF1294at 552.217 kb on + strand, within GFF1294at 552.218 kb on - strand, within GFF1294at 552.271 kb on + strand, within GFF1294at 552.271 kb on + strand, within GFF1294at 552.298 kb on - strand, within GFF1294at 552.321 kb on + strand, within GFF1294at 552.321 kb on + strand, within GFF1294at 552.322 kb on - strand, within GFF1294at 552.350 kb on + strand, within GFF1294at 552.371 kb on + strand, within GFF1294at 552.403 kb on + strand, within GFF1294at 552.589 kb on + strand, within GFF1294at 552.589 kb on + strand, within GFF1294at 552.589 kb on + strand, within GFF1294at 552.613 kb on + strand, within GFF1294at 552.613 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.655 kb on + strand, within GFF1294at 552.656 kb on - strand, within GFF1294at 552.695 kb on + strand, within GFF1294at 552.696 kb on - strand, within GFF1294at 552.719 kb on + strand, within GFF1294at 552.724 kb on + strand, within GFF1294at 552.817 kb on + strand, within GFF1294at 552.817 kb on + strand, within GFF1294at 552.817 kb on + strand, within GFF1294at 552.900 kb on + strand, within GFF1294at 552.913 kb on + strand, within GFF1294at 552.913 kb on + strand, within GFF1294at 552.913 kb on + strand, within GFF1294at 553.019 kb on + strandat 553.019 kb on + strandat 553.019 kb on + strandat 553.022 kb on + strandat 553.033 kb on + strandat 553.033 kb on + strandat 553.034 kb on - strandat 553.041 kb on + strandat 553.080 kb on + strandat 553.080 kb on + strandat 553.080 kb on + strandat 553.131 kb on + strandat 553.132 kb on - strandat 553.281 kb on + strand, within GFF1295at 553.281 kb on + strand, within GFF1295at 553.310 kb on + strand, within GFF1295at 553.310 kb on + strand, within GFF1295at 553.422 kb on + strand, within GFF1295at 553.422 kb on + strand, within GFF1295at 553.423 kb on - strand, within GFF1295at 553.423 kb on - strand, within GFF1295at 553.485 kb on + strand, within GFF1295at 553.486 kb on - strand, within GFF1295at 553.549 kb on + strand, within GFF1295at 553.549 kb on + strand, within GFF1295at 553.549 kb on + strand, within GFF1295at 553.549 kb on + strand, within GFF1295at 553.549 kb on + strand, within GFF1295at 553.550 kb on - strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.607 kb on + strand, within GFF1295at 553.608 kb on - strand, within GFF1295at 553.608 kb on - strand, within GFF1295at 553.612 kb on + strand, within GFF1295at 553.613 kb on - strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.677 kb on + strand, within GFF1295at 553.682 kb on + strand, within GFF1295at 553.682 kb on + strand, within GFF1295at 553.682 kb on + strand, within GFF1295at 553.732 kb on + strand, within GFF1295at 553.746 kb on + strand, within GFF1295at 553.746 kb on + strand, within GFF1295at 553.746 kb on + strand, within GFF1295at 553.747 kb on - strand, within GFF1295at 553.784 kb on - strand, within GFF1295at 553.843 kb on + strand, within GFF1295at 553.843 kb on + strand, within GFF1295at 553.878 kb on + strand, within GFF1295at 553.878 kb on + strand, within GFF1295at 554.058 kb on + strand, within GFF1295at 554.058 kb on + strand, within GFF1295at 554.058 kb on + strand, within GFF1295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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551,160 + GFF1293 0.14 +0.4
551,160 + GFF1293 0.14 -1.1
551,161 - GFF1293 0.14 -0.6
551,161 - GFF1293 0.14 -1.5
551,161 - GFF1293 0.14 +0.4
551,349 + GFF1293 0.32 -1.3
551,379 + GFF1293 0.34 -1.4
551,495 - GFF1293 0.45 -1.1
551,560 + GFF1293 0.51 -1.0
551,606 + GFF1293 0.56 -0.1
551,653 + GFF1293 0.60 -1.1
551,653 + GFF1293 0.60 -2.3
551,653 + GFF1293 0.60 -1.2
551,654 - GFF1293 0.60 -1.5
551,935 + GFF1293 0.86 -2.1
551,935 + GFF1293 0.86 +0.0
551,935 + GFF1293 0.86 -1.0
551,938 - GFF1293 0.86 -1.5
551,993 + -0.5
551,994 - +0.5
551,996 + +0.2
552,008 + -0.3
552,070 + -2.0
552,083 - -2.1
552,104 - -1.3
552,183 + GFF1294 0.11 -1.3
552,217 + GFF1294 0.14 -1.4
552,217 + GFF1294 0.14 -1.2
552,217 + GFF1294 0.14 -2.2
552,218 - GFF1294 0.14 -1.5
552,271 + GFF1294 0.19 -1.1
552,271 + GFF1294 0.19 -1.4
552,298 - GFF1294 0.22 -0.7
552,321 + GFF1294 0.24 -1.1
552,321 + GFF1294 0.24 +0.0
552,322 - GFF1294 0.24 -3.5
552,350 + GFF1294 0.26 -0.1
552,371 + GFF1294 0.28 -1.1
552,403 + GFF1294 0.32 -1.1
552,589 + GFF1294 0.49 -1.5
552,589 + GFF1294 0.49 +0.1
552,589 + GFF1294 0.49 -1.1
552,613 + GFF1294 0.51 -1.7
552,613 + GFF1294 0.51 -2.4
552,655 + GFF1294 0.55 -0.1
552,655 + GFF1294 0.55 -1.6
552,655 + GFF1294 0.55 -1.7
552,655 + GFF1294 0.55 -2.1
552,656 - GFF1294 0.56 +0.4
552,695 + GFF1294 0.59 -1.6
552,696 - GFF1294 0.59 -1.1
552,719 + GFF1294 0.62 -1.3
552,724 + GFF1294 0.62 -1.1
552,817 + GFF1294 0.71 -1.5
552,817 + GFF1294 0.71 -0.5
552,817 + GFF1294 0.71 -2.5
552,900 + GFF1294 0.79 -0.1
552,913 + GFF1294 0.80 -3.0
552,913 + GFF1294 0.80 -1.7
552,913 + GFF1294 0.80 -1.1
553,019 + -0.8
553,019 + -1.2
553,019 + -2.0
553,022 + -0.5
553,033 + -1.7
553,033 + +0.4
553,034 - -1.5
553,041 + -3.1
553,080 + -2.0
553,080 + -2.4
553,080 + -1.5
553,131 + -1.5
553,132 - +0.1
553,281 + GFF1295 0.13 +0.0
553,281 + GFF1295 0.13 -0.6
553,310 + GFF1295 0.15 -0.7
553,310 + GFF1295 0.15 -0.5
553,422 + GFF1295 0.23 -0.6
553,422 + GFF1295 0.23 -0.7
553,423 - GFF1295 0.23 -0.5
553,423 - GFF1295 0.23 -1.7
553,485 + GFF1295 0.27 -1.0
553,486 - GFF1295 0.27 -1.5
553,549 + GFF1295 0.32 -2.0
553,549 + GFF1295 0.32 -0.6
553,549 + GFF1295 0.32 -2.1
553,549 + GFF1295 0.32 -0.5
553,549 + GFF1295 0.32 +0.0
553,550 - GFF1295 0.32 -2.0
553,607 + GFF1295 0.35 -0.7
553,607 + GFF1295 0.35 +1.2
553,607 + GFF1295 0.35 -0.1
553,607 + GFF1295 0.35 -0.1
553,607 + GFF1295 0.35 -1.5
553,608 - GFF1295 0.35 +0.3
553,608 - GFF1295 0.35 -2.5
553,612 + GFF1295 0.36 -2.3
553,613 - GFF1295 0.36 -1.1
553,677 + GFF1295 0.40 -1.5
553,677 + GFF1295 0.40 -2.0
553,677 + GFF1295 0.40 +0.3
553,677 + GFF1295 0.40 +0.9
553,682 + GFF1295 0.40 -0.1
553,682 + GFF1295 0.40 -0.5
553,682 + GFF1295 0.40 -0.9
553,732 + GFF1295 0.44 -0.2
553,746 + GFF1295 0.45 -1.0
553,746 + GFF1295 0.45 -0.1
553,746 + GFF1295 0.45 -0.5
553,747 - GFF1295 0.45 -0.5
553,784 - GFF1295 0.47 -0.1
553,843 + GFF1295 0.51 -1.7
553,843 + GFF1295 0.51 -0.7
553,878 + GFF1295 0.54 -0.4
553,878 + GFF1295 0.54 -0.0
554,058 + GFF1295 0.66 +0.4
554,058 + GFF1295 0.66 -0.6
554,058 + GFF1295 0.66 -1.6

Or see this region's nucleotide sequence