Strain Fitness in Methylophilus sp. DMC18 around GFF1285

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1284 and GFF1285 are separated by 91 nucleotidesGFF1285 and GFF1286 are separated by 17 nucleotidesGFF1286 and GFF1287 are separated by 106 nucleotides GFF1284 - Polyphosphate:AMP/ADP phosphotransferase, at 542,509 to 543,321 GFF1284 GFF1285 - hypothetical protein, at 543,413 to 544,750 GFF1285 GFF1286 - Response regulator UvrY, at 544,768 to 545,400 GFF1286 GFF1287 - Pseudopaline exporter CntI, at 545,507 to 546,484 GFF1287 Position (kb) 543 544 545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 542.439 kb on + strandat 542.473 kb on + strandat 542.473 kb on + strandat 542.473 kb on + strandat 542.527 kb on + strandat 542.563 kb on + strandat 542.563 kb on + strandat 542.598 kb on + strand, within GFF1284at 542.598 kb on + strand, within GFF1284at 542.644 kb on - strand, within GFF1284at 542.659 kb on - strand, within GFF1284at 542.659 kb on - strand, within GFF1284at 542.682 kb on + strand, within GFF1284at 542.682 kb on + strand, within GFF1284at 542.682 kb on + strand, within GFF1284at 542.682 kb on + strand, within GFF1284at 542.683 kb on - strand, within GFF1284at 542.712 kb on + strand, within GFF1284at 542.713 kb on - strand, within GFF1284at 542.766 kb on - strand, within GFF1284at 542.787 kb on + strand, within GFF1284at 542.797 kb on - strand, within GFF1284at 542.821 kb on + strand, within GFF1284at 542.821 kb on + strand, within GFF1284at 542.821 kb on + strand, within GFF1284at 542.821 kb on + strand, within GFF1284at 542.822 kb on - strand, within GFF1284at 542.880 kb on + strand, within GFF1284at 542.976 kb on + strand, within GFF1284at 542.976 kb on + strand, within GFF1284at 542.976 kb on + strand, within GFF1284at 542.977 kb on - strand, within GFF1284at 542.977 kb on - strand, within GFF1284at 543.017 kb on + strand, within GFF1284at 543.018 kb on - strand, within GFF1284at 543.021 kb on + strand, within GFF1284at 543.021 kb on + strand, within GFF1284at 543.021 kb on + strand, within GFF1284at 543.022 kb on - strand, within GFF1284at 543.022 kb on - strand, within GFF1284at 543.022 kb on - strand, within GFF1284at 543.090 kb on + strand, within GFF1284at 543.130 kb on + strand, within GFF1284at 543.130 kb on + strand, within GFF1284at 543.130 kb on + strand, within GFF1284at 543.130 kb on + strand, within GFF1284at 543.130 kb on + strand, within GFF1284at 543.130 kb on + strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.131 kb on - strand, within GFF1284at 543.132 kb on + strand, within GFF1284at 543.132 kb on + strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.133 kb on - strand, within GFF1284at 543.143 kb on - strand, within GFF1284at 543.143 kb on - strand, within GFF1284at 543.187 kb on + strand, within GFF1284at 543.187 kb on + strand, within GFF1284at 543.187 kb on + strand, within GFF1284at 543.187 kb on + strand, within GFF1284at 543.188 kb on - strand, within GFF1284at 543.208 kb on - strand, within GFF1284at 543.275 kb on - strandat 543.319 kb on + strandat 543.319 kb on + strandat 543.371 kb on - strandat 543.374 kb on + strandat 543.375 kb on - strandat 543.381 kb on + strandat 543.381 kb on + strandat 543.381 kb on + strandat 543.382 kb on - strandat 543.382 kb on - strandat 543.384 kb on + strandat 543.384 kb on + strandat 543.400 kb on - strandat 543.441 kb on + strandat 543.441 kb on + strandat 543.441 kb on + strandat 543.511 kb on + strandat 543.511 kb on + strandat 543.511 kb on + strandat 543.536 kb on - strandat 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.611 kb on + strand, within GFF1285at 543.644 kb on + strand, within GFF1285at 543.645 kb on - strand, within GFF1285at 543.645 kb on - strand, within GFF1285at 543.645 kb on - strand, within GFF1285at 543.671 kb on + strand, within GFF1285at 543.671 kb on + strand, within GFF1285at 543.671 kb on + strand, within GFF1285at 543.671 kb on + strand, within GFF1285at 543.671 kb on + strand, within GFF1285at 543.678 kb on - strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.695 kb on + strand, within GFF1285at 543.696 kb on - strand, within GFF1285at 543.696 kb on - strand, within GFF1285at 543.696 kb on - strand, within GFF1285at 543.719 kb on - strand, within GFF1285at 543.750 kb on + strand, within GFF1285at 543.750 kb on + strand, within GFF1285at 543.750 kb on + strand, within GFF1285at 543.751 kb on - strand, within GFF1285at 543.909 kb on + strand, within GFF1285at 543.909 kb on + strand, within GFF1285at 543.910 kb on - strand, within GFF1285at 543.914 kb on + strand, within GFF1285at 543.914 kb on + strand, within GFF1285at 543.914 kb on + strand, within GFF1285at 543.915 kb on - strand, within GFF1285at 543.915 kb on - strand, within GFF1285at 543.915 kb on - strand, within GFF1285at 543.952 kb on + strand, within GFF1285at 543.953 kb on - strand, within GFF1285at 543.975 kb on + strand, within GFF1285at 543.975 kb on + strand, within GFF1285at 543.976 kb on - strand, within GFF1285at 544.033 kb on + strand, within GFF1285at 544.105 kb on + strand, within GFF1285at 544.105 kb on + strand, within GFF1285at 544.116 kb on + strand, within GFF1285at 544.126 kb on + strand, within GFF1285at 544.126 kb on + strand, within GFF1285at 544.127 kb on - strand, within GFF1285at 544.127 kb on - strand, within GFF1285at 544.181 kb on + strand, within GFF1285at 544.181 kb on + strand, within GFF1285at 544.181 kb on + strand, within GFF1285at 544.182 kb on - strand, within GFF1285at 544.182 kb on - strand, within GFF1285at 544.182 kb on - strand, within GFF1285at 544.246 kb on + strand, within GFF1285at 544.246 kb on + strand, within GFF1285at 544.247 kb on - strand, within GFF1285at 544.288 kb on + strand, within GFF1285at 544.288 kb on + strand, within GFF1285at 544.288 kb on + strand, within GFF1285at 544.289 kb on - strand, within GFF1285at 544.289 kb on - strand, within GFF1285at 544.289 kb on - strand, within GFF1285at 544.292 kb on + strand, within GFF1285at 544.293 kb on - strand, within GFF1285at 544.309 kb on + strand, within GFF1285at 544.309 kb on + strand, within GFF1285at 544.323 kb on + strand, within GFF1285at 544.345 kb on + strand, within GFF1285at 544.345 kb on + strand, within GFF1285at 544.346 kb on - strand, within GFF1285at 544.372 kb on + strand, within GFF1285at 544.372 kb on + strand, within GFF1285at 544.372 kb on + strand, within GFF1285at 544.372 kb on + strand, within GFF1285at 544.373 kb on - strand, within GFF1285at 544.373 kb on - strand, within GFF1285at 544.373 kb on - strand, within GFF1285at 544.407 kb on + strand, within GFF1285at 544.407 kb on + strand, within GFF1285at 544.407 kb on + strand, within GFF1285at 544.413 kb on + strand, within GFF1285at 544.413 kb on + strand, within GFF1285at 544.413 kb on + strand, within GFF1285at 544.414 kb on - strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.528 kb on + strand, within GFF1285at 544.529 kb on - strand, within GFF1285at 544.529 kb on - strand, within GFF1285at 544.529 kb on - strand, within GFF1285at 544.542 kb on + strand, within GFF1285at 544.563 kb on + strand, within GFF1285at 544.563 kb on + strand, within GFF1285at 544.656 kb on + strandat 544.683 kb on + strandat 544.684 kb on - strandat 544.735 kb on + strandat 544.737 kb on + strandat 544.752 kb on + strandat 544.752 kb on + strandat 544.752 kb on + strandat 544.752 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.421 kb on + strandat 545.421 kb on + strandat 545.421 kb on + strandat 545.421 kb on + strandat 545.421 kb on + strandat 545.421 kb on + strandat 545.421 kb on + strandat 545.422 kb on - strandat 545.422 kb on - strandat 545.433 kb on - strandat 545.446 kb on + strandat 545.447 kb on - strandat 545.447 kb on - strandat 545.452 kb on + strandat 545.453 kb on - strandat 545.469 kb on - strandat 545.528 kb on + strandat 545.529 kb on - strandat 545.529 kb on - strandat 545.529 kb on - strandat 545.529 kb on - strandat 545.529 kb on - strandat 545.632 kb on + strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.633 kb on - strand, within GFF1287at 545.634 kb on + strand, within GFF1287at 545.634 kb on + strand, within GFF1287at 545.635 kb on - strand, within GFF1287at 545.635 kb on - strand, within GFF1287at 545.729 kb on + strand, within GFF1287at 545.730 kb on - strand, within GFF1287at 545.750 kb on + strand, within GFF1287

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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542,439 + -0.1
542,473 + -1.1
542,473 + -1.0
542,473 + -0.1
542,527 + -0.5
542,563 + -1.1
542,563 + +0.7
542,598 + GFF1284 0.11 +0.0
542,598 + GFF1284 0.11 -0.3
542,644 - GFF1284 0.17 -1.3
542,659 - GFF1284 0.18 +0.6
542,659 - GFF1284 0.18 -0.5
542,682 + GFF1284 0.21 -0.6
542,682 + GFF1284 0.21 +0.5
542,682 + GFF1284 0.21 +1.2
542,682 + GFF1284 0.21 +1.5
542,683 - GFF1284 0.21 -1.1
542,712 + GFF1284 0.25 -0.6
542,713 - GFF1284 0.25 -2.3
542,766 - GFF1284 0.32 -0.0
542,787 + GFF1284 0.34 -1.3
542,797 - GFF1284 0.35 -1.1
542,821 + GFF1284 0.38 +0.3
542,821 + GFF1284 0.38 -0.6
542,821 + GFF1284 0.38 -0.2
542,821 + GFF1284 0.38 +0.8
542,822 - GFF1284 0.38 -0.6
542,880 + GFF1284 0.46 -1.7
542,976 + GFF1284 0.57 +0.2
542,976 + GFF1284 0.57 +0.2
542,976 + GFF1284 0.57 +0.3
542,977 - GFF1284 0.58 -1.0
542,977 - GFF1284 0.58 -0.5
543,017 + GFF1284 0.62 -1.1
543,018 - GFF1284 0.63 -0.7
543,021 + GFF1284 0.63 -1.1
543,021 + GFF1284 0.63 +1.3
543,021 + GFF1284 0.63 +0.6
543,022 - GFF1284 0.63 -0.5
543,022 - GFF1284 0.63 +0.9
543,022 - GFF1284 0.63 -1.8
543,090 + GFF1284 0.71 -0.1
543,130 + GFF1284 0.76 -1.3
543,130 + GFF1284 0.76 -2.5
543,130 + GFF1284 0.76 -2.0
543,130 + GFF1284 0.76 +1.0
543,130 + GFF1284 0.76 -1.0
543,130 + GFF1284 0.76 +0.1
543,131 - GFF1284 0.77 -1.0
543,131 - GFF1284 0.77 -1.1
543,131 - GFF1284 0.77 -1.5
543,131 - GFF1284 0.77 -1.1
543,131 - GFF1284 0.77 -0.6
543,131 - GFF1284 0.77 -0.7
543,131 - GFF1284 0.77 -0.1
543,131 - GFF1284 0.77 -0.2
543,132 + GFF1284 0.77 +0.9
543,132 + GFF1284 0.77 +0.3
543,133 - GFF1284 0.77 -0.1
543,133 - GFF1284 0.77 -1.1
543,133 - GFF1284 0.77 -0.2
543,133 - GFF1284 0.77 -0.3
543,133 - GFF1284 0.77 +1.0
543,133 - GFF1284 0.77 -1.5
543,133 - GFF1284 0.77 -0.1
543,143 - GFF1284 0.78 -0.4
543,143 - GFF1284 0.78 -0.5
543,187 + GFF1284 0.83 -1.0
543,187 + GFF1284 0.83 -1.3
543,187 + GFF1284 0.83 -2.0
543,187 + GFF1284 0.83 -1.5
543,188 - GFF1284 0.84 -0.6
543,208 - GFF1284 0.86 -0.8
543,275 - -1.1
543,319 + -0.5
543,319 + -0.3
543,371 - +0.7
543,374 + -1.5
543,375 - +0.9
543,381 + -2.1
543,381 + -0.6
543,381 + -1.1
543,382 - -0.9
543,382 - -0.1
543,384 + -1.6
543,384 + -0.6
543,400 - -1.1
543,441 + -0.4
543,441 + +0.0
543,441 + -0.6
543,511 + -1.7
543,511 + -1.0
543,511 + -1.0
543,536 - -1.7
543,611 + GFF1285 0.15 -1.5
543,611 + GFF1285 0.15 +0.5
543,611 + GFF1285 0.15 -2.6
543,611 + GFF1285 0.15 -0.3
543,611 + GFF1285 0.15 -1.7
543,611 + GFF1285 0.15 -1.7
543,611 + GFF1285 0.15 -1.6
543,611 + GFF1285 0.15 -1.1
543,644 + GFF1285 0.17 -0.5
543,645 - GFF1285 0.17 -0.1
543,645 - GFF1285 0.17 -1.7
543,645 - GFF1285 0.17 +0.6
543,671 + GFF1285 0.19 -1.7
543,671 + GFF1285 0.19 -0.6
543,671 + GFF1285 0.19 -1.0
543,671 + GFF1285 0.19 +0.1
543,671 + GFF1285 0.19 -1.3
543,678 - GFF1285 0.20 +0.3
543,695 + GFF1285 0.21 -1.5
543,695 + GFF1285 0.21 -1.1
543,695 + GFF1285 0.21 -0.7
543,695 + GFF1285 0.21 -1.3
543,695 + GFF1285 0.21 -1.2
543,695 + GFF1285 0.21 +0.1
543,695 + GFF1285 0.21 -0.6
543,696 - GFF1285 0.21 -1.0
543,696 - GFF1285 0.21 -1.1
543,696 - GFF1285 0.21 -0.6
543,719 - GFF1285 0.23 +0.0
543,750 + GFF1285 0.25 -1.6
543,750 + GFF1285 0.25 -1.1
543,750 + GFF1285 0.25 -0.3
543,751 - GFF1285 0.25 -0.7
543,909 + GFF1285 0.37 -0.9
543,909 + GFF1285 0.37 -1.1
543,910 - GFF1285 0.37 -1.3
543,914 + GFF1285 0.37 -1.0
543,914 + GFF1285 0.37 -0.4
543,914 + GFF1285 0.37 -1.5
543,915 - GFF1285 0.38 -0.5
543,915 - GFF1285 0.38 +0.3
543,915 - GFF1285 0.38 +0.5
543,952 + GFF1285 0.40 -2.0
543,953 - GFF1285 0.40 -1.5
543,975 + GFF1285 0.42 -3.1
543,975 + GFF1285 0.42 -0.1
543,976 - GFF1285 0.42 -1.1
544,033 + GFF1285 0.46 -0.1
544,105 + GFF1285 0.52 -0.4
544,105 + GFF1285 0.52 -1.1
544,116 + GFF1285 0.53 -0.6
544,126 + GFF1285 0.53 -0.7
544,126 + GFF1285 0.53 +0.4
544,127 - GFF1285 0.53 +0.4
544,127 - GFF1285 0.53 -1.5
544,181 + GFF1285 0.57 -1.7
544,181 + GFF1285 0.57 -2.3
544,181 + GFF1285 0.57 -1.1
544,182 - GFF1285 0.57 -0.4
544,182 - GFF1285 0.57 -0.2
544,182 - GFF1285 0.57 -1.5
544,246 + GFF1285 0.62 -1.1
544,246 + GFF1285 0.62 +0.3
544,247 - GFF1285 0.62 -1.1
544,288 + GFF1285 0.65 -0.5
544,288 + GFF1285 0.65 -0.7
544,288 + GFF1285 0.65 -1.8
544,289 - GFF1285 0.65 -0.7
544,289 - GFF1285 0.65 -0.6
544,289 - GFF1285 0.65 -0.7
544,292 + GFF1285 0.66 -0.6
544,293 - GFF1285 0.66 -2.5
544,309 + GFF1285 0.67 -1.5
544,309 + GFF1285 0.67 -1.7
544,323 + GFF1285 0.68 -1.1
544,345 + GFF1285 0.70 -2.3
544,345 + GFF1285 0.70 -1.4
544,346 - GFF1285 0.70 -0.1
544,372 + GFF1285 0.72 -3.3
544,372 + GFF1285 0.72 -0.5
544,372 + GFF1285 0.72 -0.6
544,372 + GFF1285 0.72 -0.7
544,373 - GFF1285 0.72 -1.0
544,373 - GFF1285 0.72 -0.1
544,373 - GFF1285 0.72 -1.5
544,407 + GFF1285 0.74 -2.2
544,407 + GFF1285 0.74 -0.6
544,407 + GFF1285 0.74 -1.8
544,413 + GFF1285 0.75 -1.1
544,413 + GFF1285 0.75 -0.4
544,413 + GFF1285 0.75 -1.1
544,414 - GFF1285 0.75 +0.6
544,528 + GFF1285 0.83 -0.3
544,528 + GFF1285 0.83 -1.8
544,528 + GFF1285 0.83 -1.7
544,528 + GFF1285 0.83 -0.5
544,528 + GFF1285 0.83 -0.3
544,528 + GFF1285 0.83 -0.6
544,528 + GFF1285 0.83 -1.0
544,529 - GFF1285 0.83 -0.1
544,529 - GFF1285 0.83 -0.1
544,529 - GFF1285 0.83 -2.5
544,542 + GFF1285 0.84 +0.4
544,563 + GFF1285 0.86 -1.5
544,563 + GFF1285 0.86 -1.1
544,656 + +0.3
544,683 + -1.1
544,684 - -0.1
544,735 + +0.1
544,737 + -1.3
544,752 + -0.7
544,752 + -1.7
544,752 + +0.9
544,752 + -0.5
545,390 + +0.0
545,390 + -0.9
545,421 + +0.7
545,421 + -0.5
545,421 + -1.7
545,421 + +0.0
545,421 + -0.6
545,421 + -1.7
545,421 + +0.3
545,422 - -1.5
545,422 - -0.4
545,433 - +0.9
545,446 + +0.0
545,447 - -0.4
545,447 - -0.6
545,452 + -2.0
545,453 - -0.5
545,469 - +2.0
545,528 + -1.3
545,529 - -0.1
545,529 - -1.4
545,529 - +0.7
545,529 - -0.9
545,529 - -0.5
545,632 + GFF1287 0.13 -0.5
545,633 - GFF1287 0.13 +0.1
545,633 - GFF1287 0.13 -0.1
545,633 - GFF1287 0.13 -1.1
545,633 - GFF1287 0.13 -0.1
545,633 - GFF1287 0.13 -0.9
545,633 - GFF1287 0.13 -0.9
545,633 - GFF1287 0.13 +0.2
545,634 + GFF1287 0.13 -1.0
545,634 + GFF1287 0.13 +0.4
545,635 - GFF1287 0.13 -1.5
545,635 - GFF1287 0.13 -0.6
545,729 + GFF1287 0.23 +0.4
545,730 - GFF1287 0.23 -1.1
545,750 + GFF1287 0.25 +0.3

Or see this region's nucleotide sequence