Strain Fitness in Methylophilus sp. DMC18 around GFF1248

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1247 and GFF1248 overlap by 8 nucleotidesGFF1248 and GFF1249 overlap by 9 nucleotides GFF1247 - 4-alpha-glucanotransferase, at 498,326 to 499,783 GFF1247 GFF1248 - N-acetyl-D-glucosamine kinase, at 499,776 to 500,723 GFF1248 GFF1249 - Epoxyqueuosine reductase, at 500,715 to 501,767 GFF1249 Position (kb) 499 500 501Strain fitness (log2 ratio) -3 -2 -1 0 1at 498.866 kb on + strand, within GFF1247at 499.046 kb on + strand, within GFF1247at 499.047 kb on - strand, within GFF1247at 499.047 kb on - strand, within GFF1247at 499.085 kb on + strand, within GFF1247at 499.086 kb on - strand, within GFF1247at 499.440 kb on + strand, within GFF1247at 499.441 kb on - strand, within GFF1247at 499.460 kb on + strand, within GFF1247at 499.484 kb on - strand, within GFF1247at 499.533 kb on + strand, within GFF1247at 499.542 kb on - strand, within GFF1247at 499.582 kb on + strand, within GFF1247at 499.680 kb on + strandat 499.680 kb on + strandat 499.680 kb on + strandat 499.680 kb on + strandat 499.680 kb on + strandat 499.687 kb on + strandat 499.688 kb on - strandat 499.890 kb on + strand, within GFF1248at 499.890 kb on + strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.941 kb on - strand, within GFF1248at 500.000 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.003 kb on - strand, within GFF1248at 500.003 kb on - strand, within GFF1248at 500.003 kb on - strand, within GFF1248at 500.168 kb on + strand, within GFF1248at 500.203 kb on - strand, within GFF1248at 500.203 kb on - strand, within GFF1248at 500.294 kb on + strand, within GFF1248at 500.294 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.298 kb on - strand, within GFF1248at 500.355 kb on + strand, within GFF1248at 500.355 kb on + strand, within GFF1248at 500.355 kb on + strand, within GFF1248at 500.356 kb on - strand, within GFF1248at 500.356 kb on - strand, within GFF1248at 500.385 kb on + strand, within GFF1248at 500.386 kb on - strand, within GFF1248at 500.512 kb on + strand, within GFF1248at 500.513 kb on - strand, within GFF1248at 500.513 kb on - strand, within GFF1248at 500.602 kb on + strand, within GFF1248at 500.603 kb on - strand, within GFF1248at 500.650 kb on + strandat 500.650 kb on + strandat 500.651 kb on - strandat 500.651 kb on - strandat 500.721 kb on + strandat 500.864 kb on + strand, within GFF1249at 500.865 kb on - strand, within GFF1249at 500.884 kb on + strand, within GFF1249at 500.889 kb on + strand, within GFF1249at 500.889 kb on + strand, within GFF1249at 500.890 kb on - strand, within GFF1249at 500.890 kb on - strand, within GFF1249at 500.896 kb on + strand, within GFF1249at 500.896 kb on + strand, within GFF1249at 501.040 kb on - strand, within GFF1249at 501.040 kb on - strand, within GFF1249at 501.061 kb on + strand, within GFF1249at 501.062 kb on - strand, within GFF1249at 501.062 kb on - strand, within GFF1249at 501.062 kb on - strand, within GFF1249at 501.062 kb on - strand, within GFF1249at 501.062 kb on - strand, within GFF1249at 501.117 kb on + strand, within GFF1249at 501.117 kb on + strand, within GFF1249at 501.117 kb on + strand, within GFF1249at 501.117 kb on + strand, within GFF1249at 501.117 kb on + strand, within GFF1249at 501.117 kb on + strand, within GFF1249at 501.118 kb on - strand, within GFF1249at 501.118 kb on - strand, within GFF1249at 501.118 kb on - strand, within GFF1249at 501.118 kb on - strand, within GFF1249at 501.128 kb on - strand, within GFF1249at 501.134 kb on + strand, within GFF1249at 501.134 kb on + strand, within GFF1249at 501.135 kb on - strand, within GFF1249at 501.150 kb on + strand, within GFF1249at 501.150 kb on + strand, within GFF1249at 501.151 kb on - strand, within GFF1249at 501.157 kb on + strand, within GFF1249at 501.157 kb on + strand, within GFF1249at 501.158 kb on - strand, within GFF1249at 501.194 kb on + strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.195 kb on - strand, within GFF1249at 501.259 kb on + strand, within GFF1249at 501.260 kb on - strand, within GFF1249at 501.311 kb on + strand, within GFF1249at 501.311 kb on + strand, within GFF1249at 501.311 kb on + strand, within GFF1249at 501.312 kb on - strand, within GFF1249at 501.312 kb on - strand, within GFF1249at 501.312 kb on - strand, within GFF1249at 501.312 kb on - strand, within GFF1249at 501.384 kb on + strand, within GFF1249at 501.384 kb on + strand, within GFF1249at 501.384 kb on + strand, within GFF1249at 501.384 kb on + strand, within GFF1249at 501.385 kb on - strand, within GFF1249at 501.385 kb on - strand, within GFF1249at 501.458 kb on + strand, within GFF1249at 501.493 kb on + strand, within GFF1249at 501.494 kb on - strand, within GFF1249at 501.494 kb on - strand, within GFF1249at 501.550 kb on + strand, within GFF1249at 501.633 kb on - strand, within GFF1249

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
498,866 + GFF1247 0.37 -1.1
499,046 + GFF1247 0.49 -1.1
499,047 - GFF1247 0.49 -0.1
499,047 - GFF1247 0.49 +0.4
499,085 + GFF1247 0.52 -1.7
499,086 - GFF1247 0.52 -1.1
499,440 + GFF1247 0.76 -1.5
499,441 - GFF1247 0.76 -1.1
499,460 + GFF1247 0.78 -2.0
499,484 - GFF1247 0.79 -1.1
499,533 + GFF1247 0.83 -2.0
499,542 - GFF1247 0.83 -1.1
499,582 + GFF1247 0.86 -2.0
499,680 + -1.1
499,680 + -1.5
499,680 + -1.7
499,680 + -2.0
499,680 + -1.1
499,687 + -1.5
499,688 - -2.1
499,890 + GFF1248 0.12 -2.1
499,890 + GFF1248 0.12 +0.0
499,891 - GFF1248 0.12 -2.1
499,891 - GFF1248 0.12 -1.1
499,891 - GFF1248 0.12 -0.5
499,891 - GFF1248 0.12 -2.0
499,941 - GFF1248 0.17 -0.1
500,000 + GFF1248 0.24 -0.1
500,002 + GFF1248 0.24 -1.5
500,002 + GFF1248 0.24 -2.5
500,002 + GFF1248 0.24 -2.7
500,002 + GFF1248 0.24 -1.1
500,002 + GFF1248 0.24 -0.5
500,003 - GFF1248 0.24 -1.3
500,003 - GFF1248 0.24 -1.0
500,003 - GFF1248 0.24 -1.7
500,168 + GFF1248 0.41 -2.0
500,203 - GFF1248 0.45 -1.0
500,203 - GFF1248 0.45 -0.1
500,294 + GFF1248 0.55 -2.3
500,294 + GFF1248 0.55 -1.1
500,297 + GFF1248 0.55 -2.0
500,297 + GFF1248 0.55 -1.7
500,297 + GFF1248 0.55 -2.1
500,297 + GFF1248 0.55 -1.1
500,297 + GFF1248 0.55 -3.1
500,297 + GFF1248 0.55 -1.1
500,298 - GFF1248 0.55 -1.1
500,355 + GFF1248 0.61 -2.8
500,355 + GFF1248 0.61 -1.1
500,355 + GFF1248 0.61 -2.5
500,356 - GFF1248 0.61 -3.3
500,356 - GFF1248 0.61 -1.5
500,385 + GFF1248 0.64 -0.1
500,386 - GFF1248 0.64 -1.1
500,512 + GFF1248 0.78 -1.7
500,513 - GFF1248 0.78 +0.0
500,513 - GFF1248 0.78 -1.5
500,602 + GFF1248 0.87 +0.0
500,603 - GFF1248 0.87 -1.5
500,650 + -2.5
500,650 + -2.1
500,651 - +0.3
500,651 - +0.4
500,721 + -1.3
500,864 + GFF1249 0.14 -0.7
500,865 - GFF1249 0.14 -1.7
500,884 + GFF1249 0.16 -2.1
500,889 + GFF1249 0.17 -1.5
500,889 + GFF1249 0.17 -0.8
500,890 - GFF1249 0.17 -0.3
500,890 - GFF1249 0.17 +0.4
500,896 + GFF1249 0.17 -0.7
500,896 + GFF1249 0.17 -1.1
501,040 - GFF1249 0.31 -1.1
501,040 - GFF1249 0.31 -0.1
501,061 + GFF1249 0.33 +1.0
501,062 - GFF1249 0.33 -0.5
501,062 - GFF1249 0.33 -0.1
501,062 - GFF1249 0.33 -1.5
501,062 - GFF1249 0.33 -0.6
501,062 - GFF1249 0.33 -1.2
501,117 + GFF1249 0.38 +0.3
501,117 + GFF1249 0.38 -0.0
501,117 + GFF1249 0.38 -0.6
501,117 + GFF1249 0.38 +0.2
501,117 + GFF1249 0.38 -0.8
501,117 + GFF1249 0.38 -1.7
501,118 - GFF1249 0.38 +0.5
501,118 - GFF1249 0.38 +0.5
501,118 - GFF1249 0.38 -0.7
501,118 - GFF1249 0.38 -0.5
501,128 - GFF1249 0.39 +0.5
501,134 + GFF1249 0.40 -1.1
501,134 + GFF1249 0.40 +0.7
501,135 - GFF1249 0.40 -1.1
501,150 + GFF1249 0.41 -0.2
501,150 + GFF1249 0.41 -1.1
501,151 - GFF1249 0.41 -1.5
501,157 + GFF1249 0.42 -2.0
501,157 + GFF1249 0.42 -1.3
501,158 - GFF1249 0.42 +0.0
501,194 + GFF1249 0.45 -1.6
501,195 - GFF1249 0.46 -1.1
501,195 - GFF1249 0.46 -0.1
501,195 - GFF1249 0.46 -0.1
501,195 - GFF1249 0.46 -0.1
501,195 - GFF1249 0.46 -0.5
501,195 - GFF1249 0.46 -1.5
501,195 - GFF1249 0.46 -0.7
501,259 + GFF1249 0.52 -0.2
501,260 - GFF1249 0.52 -0.4
501,311 + GFF1249 0.57 -0.0
501,311 + GFF1249 0.57 -0.4
501,311 + GFF1249 0.57 -1.5
501,312 - GFF1249 0.57 -0.7
501,312 - GFF1249 0.57 -1.5
501,312 - GFF1249 0.57 -1.0
501,312 - GFF1249 0.57 -0.7
501,384 + GFF1249 0.64 -0.7
501,384 + GFF1249 0.64 -0.4
501,384 + GFF1249 0.64 -1.5
501,384 + GFF1249 0.64 -0.7
501,385 - GFF1249 0.64 -2.6
501,385 - GFF1249 0.64 -1.5
501,458 + GFF1249 0.71 -1.7
501,493 + GFF1249 0.74 -0.7
501,494 - GFF1249 0.74 +0.3
501,494 - GFF1249 0.74 -0.8
501,550 + GFF1249 0.79 -0.7
501,633 - GFF1249 0.87 -0.7

Or see this region's nucleotide sequence