Strain Fitness in Methylophilus sp. DMC18 around GFF1246

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1245 and GFF1246 are separated by 36 nucleotidesGFF1246 and GFF1247 are separated by 28 nucleotides GFF1245 - Glucose-1-phosphate adenylyltransferase, at 495,235 to 496,557 GFF1245 GFF1246 - hypothetical protein, at 496,594 to 498,297 GFF1246 GFF1247 - 4-alpha-glucanotransferase, at 498,326 to 499,783 GFF1247 Position (kb) 496 497 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1at 495.607 kb on + strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.632 kb on - strand, within GFF1245at 495.670 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.673 kb on - strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.700 kb on + strand, within GFF1245at 495.702 kb on + strand, within GFF1245at 495.703 kb on - strand, within GFF1245at 495.870 kb on + strand, within GFF1245at 495.871 kb on - strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.910 kb on - strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.914 kb on - strand, within GFF1245at 495.914 kb on - strand, within GFF1245at 495.915 kb on + strand, within GFF1245at 495.961 kb on + strand, within GFF1245at 495.962 kb on - strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.050 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.162 kb on + strand, within GFF1245at 496.189 kb on + strand, within GFF1245at 496.302 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.360 kb on - strand, within GFF1245at 496.360 kb on - strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.362 kb on - strand, within GFF1245at 496.473 kb on + strandat 496.473 kb on + strandat 496.474 kb on - strandat 496.508 kb on + strandat 496.508 kb on + strandat 496.508 kb on + strandat 496.541 kb on + strandat 496.541 kb on + strandat 496.541 kb on + strandat 496.541 kb on + strandat 496.542 kb on - strandat 496.561 kb on + strandat 496.561 kb on + strandat 496.561 kb on + strandat 496.561 kb on + strandat 496.562 kb on - strandat 496.562 kb on - strandat 496.622 kb on + strandat 496.622 kb on + strandat 496.690 kb on + strandat 496.690 kb on + strandat 496.690 kb on + strandat 496.690 kb on + strandat 496.691 kb on - strandat 496.711 kb on + strandat 496.711 kb on + strandat 496.711 kb on + strandat 496.719 kb on + strandat 496.772 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.801 kb on + strand, within GFF1246at 496.802 kb on - strand, within GFF1246at 496.996 kb on - strand, within GFF1246at 497.035 kb on + strand, within GFF1246at 497.037 kb on + strand, within GFF1246at 497.037 kb on + strand, within GFF1246at 497.038 kb on - strand, within GFF1246at 497.038 kb on - strand, within GFF1246at 497.059 kb on + strand, within GFF1246at 497.254 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.258 kb on - strand, within GFF1246at 497.258 kb on - strand, within GFF1246at 497.341 kb on + strand, within GFF1246at 497.405 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.569 kb on + strand, within GFF1246at 497.569 kb on + strand, within GFF1246at 497.569 kb on + strand, within GFF1246at 497.575 kb on + strand, within GFF1246at 497.575 kb on + strand, within GFF1246at 497.584 kb on + strand, within GFF1246at 497.584 kb on + strand, within GFF1246at 497.586 kb on + strand, within GFF1246at 497.587 kb on - strand, within GFF1246at 497.587 kb on - strand, within GFF1246at 497.610 kb on + strand, within GFF1246at 497.611 kb on - strand, within GFF1246at 497.700 kb on + strand, within GFF1246at 497.718 kb on + strand, within GFF1246at 497.785 kb on + strand, within GFF1246at 497.785 kb on + strand, within GFF1246at 497.787 kb on - strand, within GFF1246at 497.788 kb on + strand, within GFF1246at 497.789 kb on - strand, within GFF1246at 497.794 kb on + strand, within GFF1246at 497.794 kb on + strand, within GFF1246at 497.794 kb on + strand, within GFF1246at 497.795 kb on - strand, within GFF1246at 497.803 kb on + strand, within GFF1246at 497.804 kb on - strand, within GFF1246at 497.806 kb on + strand, within GFF1246at 497.806 kb on + strand, within GFF1246at 497.807 kb on - strand, within GFF1246at 497.824 kb on + strand, within GFF1246at 497.869 kb on - strand, within GFF1246at 497.874 kb on + strand, within GFF1246at 497.928 kb on + strand, within GFF1246at 497.928 kb on + strand, within GFF1246at 497.929 kb on - strand, within GFF1246at 497.929 kb on - strand, within GFF1246at 497.961 kb on + strand, within GFF1246at 497.961 kb on + strand, within GFF1246at 497.961 kb on + strand, within GFF1246at 497.962 kb on - strand, within GFF1246at 498.028 kb on + strand, within GFF1246at 498.029 kb on - strand, within GFF1246at 498.029 kb on - strand, within GFF1246at 498.041 kb on + strand, within GFF1246at 498.041 kb on + strand, within GFF1246at 498.042 kb on - strand, within GFF1246at 498.042 kb on - strand, within GFF1246at 498.149 kb on + strandat 498.230 kb on + strandat 498.401 kb on + strandat 498.412 kb on - strandat 498.517 kb on + strand, within GFF1247at 498.517 kb on + strand, within GFF1247at 498.517 kb on + strand, within GFF1247at 498.704 kb on + strand, within GFF1247at 498.755 kb on - strand, within GFF1247at 498.866 kb on + strand, within GFF1247at 499.046 kb on + strand, within GFF1247at 499.047 kb on - strand, within GFF1247at 499.047 kb on - strand, within GFF1247at 499.085 kb on + strand, within GFF1247at 499.086 kb on - strand, within GFF1247

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
495,607 + GFF1245 0.28 -2.7
495,607 + GFF1245 0.28 -2.3
495,607 + GFF1245 0.28 -1.7
495,632 - GFF1245 0.30 -2.3
495,670 + GFF1245 0.33 -1.5
495,672 + GFF1245 0.33 -1.5
495,672 + GFF1245 0.33 -1.6
495,672 + GFF1245 0.33 -1.1
495,672 + GFF1245 0.33 -2.1
495,673 - GFF1245 0.33 -2.5
495,696 + GFF1245 0.35 -2.3
495,696 + GFF1245 0.35 -3.3
495,696 + GFF1245 0.35 -2.4
495,700 + GFF1245 0.35 -1.1
495,702 + GFF1245 0.35 -1.3
495,703 - GFF1245 0.35 -1.5
495,870 + GFF1245 0.48 -1.1
495,871 - GFF1245 0.48 -0.1
495,909 + GFF1245 0.51 -1.5
495,909 + GFF1245 0.51 -1.7
495,909 + GFF1245 0.51 -1.7
495,909 + GFF1245 0.51 -1.1
495,910 - GFF1245 0.51 -0.1
495,913 + GFF1245 0.51 -2.0
495,913 + GFF1245 0.51 -1.1
495,913 + GFF1245 0.51 -0.7
495,914 - GFF1245 0.51 -0.1
495,914 - GFF1245 0.51 -2.0
495,915 + GFF1245 0.51 -1.5
495,961 + GFF1245 0.55 -1.8
495,962 - GFF1245 0.55 -1.5
496,006 + GFF1245 0.58 -1.5
496,006 + GFF1245 0.58 -1.6
496,006 + GFF1245 0.58 -2.1
496,007 - GFF1245 0.58 -2.5
496,007 - GFF1245 0.58 -2.0
496,007 - GFF1245 0.58 -3.0
496,007 - GFF1245 0.58 -0.6
496,050 + GFF1245 0.62 -1.7
496,103 + GFF1245 0.66 -1.5
496,103 + GFF1245 0.66 -1.5
496,103 + GFF1245 0.66 -2.5
496,103 + GFF1245 0.66 -1.1
496,103 + GFF1245 0.66 -1.5
496,103 + GFF1245 0.66 -2.2
496,103 + GFF1245 0.66 -1.1
496,103 + GFF1245 0.66 -1.8
496,103 + GFF1245 0.66 -1.7
496,103 + GFF1245 0.66 -1.5
496,104 - GFF1245 0.66 -2.5
496,104 - GFF1245 0.66 -1.1
496,104 - GFF1245 0.66 -1.7
496,104 - GFF1245 0.66 -1.7
496,162 + GFF1245 0.70 -0.1
496,189 + GFF1245 0.72 -2.1
496,302 + GFF1245 0.81 -0.1
496,359 + GFF1245 0.85 -1.1
496,359 + GFF1245 0.85 -1.5
496,359 + GFF1245 0.85 -1.5
496,359 + GFF1245 0.85 -1.0
496,360 - GFF1245 0.85 -0.1
496,360 - GFF1245 0.85 -1.6
496,361 + GFF1245 0.85 -0.3
496,361 + GFF1245 0.85 -2.1
496,361 + GFF1245 0.85 -3.1
496,361 + GFF1245 0.85 -0.7
496,361 + GFF1245 0.85 -1.1
496,362 - GFF1245 0.85 -1.1
496,473 + -0.6
496,473 + -0.4
496,474 - -2.8
496,508 + -0.9
496,508 + -0.4
496,508 + -3.4
496,541 + -2.8
496,541 + -1.6
496,541 + -2.1
496,541 + -2.2
496,542 - -1.1
496,561 + -2.8
496,561 + -1.8
496,561 + -2.8
496,561 + -2.6
496,562 - -2.5
496,562 - -1.1
496,622 + -1.5
496,622 + -1.0
496,690 + -1.2
496,690 + -3.1
496,690 + -1.5
496,690 + -2.3
496,691 - -2.6
496,711 + -1.7
496,711 + -1.6
496,711 + -2.5
496,719 + -1.1
496,772 + GFF1246 0.10 -1.5
496,776 + GFF1246 0.11 -1.5
496,776 + GFF1246 0.11 -1.1
496,776 + GFF1246 0.11 -1.1
496,776 + GFF1246 0.11 -2.1
496,776 + GFF1246 0.11 -1.1
496,801 + GFF1246 0.12 -2.3
496,802 - GFF1246 0.12 -3.0
496,996 - GFF1246 0.24 -1.1
497,035 + GFF1246 0.26 -1.5
497,037 + GFF1246 0.26 -1.7
497,037 + GFF1246 0.26 -1.1
497,038 - GFF1246 0.26 -2.5
497,038 - GFF1246 0.26 -1.5
497,059 + GFF1246 0.27 -1.5
497,254 + GFF1246 0.39 -1.5
497,257 + GFF1246 0.39 -1.7
497,257 + GFF1246 0.39 -2.4
497,257 + GFF1246 0.39 -0.1
497,257 + GFF1246 0.39 -1.1
497,257 + GFF1246 0.39 -0.5
497,257 + GFF1246 0.39 -1.1
497,258 - GFF1246 0.39 -1.7
497,258 - GFF1246 0.39 +0.0
497,341 + GFF1246 0.44 -1.7
497,405 + GFF1246 0.48 -1.5
497,427 + GFF1246 0.49 -1.7
497,427 + GFF1246 0.49 -0.7
497,427 + GFF1246 0.49 -0.5
497,569 + GFF1246 0.57 -1.1
497,569 + GFF1246 0.57 -1.5
497,569 + GFF1246 0.57 -1.1
497,575 + GFF1246 0.58 -2.0
497,575 + GFF1246 0.58 -1.5
497,584 + GFF1246 0.58 -2.3
497,584 + GFF1246 0.58 -1.1
497,586 + GFF1246 0.58 -1.5
497,587 - GFF1246 0.58 -1.7
497,587 - GFF1246 0.58 -0.1
497,610 + GFF1246 0.60 -0.5
497,611 - GFF1246 0.60 -1.1
497,700 + GFF1246 0.65 -1.7
497,718 + GFF1246 0.66 -0.9
497,785 + GFF1246 0.70 -2.7
497,785 + GFF1246 0.70 -1.1
497,787 - GFF1246 0.70 -1.1
497,788 + GFF1246 0.70 -2.7
497,789 - GFF1246 0.70 -0.7
497,794 + GFF1246 0.70 -2.0
497,794 + GFF1246 0.70 -1.1
497,794 + GFF1246 0.70 -1.1
497,795 - GFF1246 0.70 -1.7
497,803 + GFF1246 0.71 -2.1
497,804 - GFF1246 0.71 -1.1
497,806 + GFF1246 0.71 -2.1
497,806 + GFF1246 0.71 -1.5
497,807 - GFF1246 0.71 -1.1
497,824 + GFF1246 0.72 -1.4
497,869 - GFF1246 0.75 -2.5
497,874 + GFF1246 0.75 -3.1
497,928 + GFF1246 0.78 -2.0
497,928 + GFF1246 0.78 -1.4
497,929 - GFF1246 0.78 -3.0
497,929 - GFF1246 0.78 -0.7
497,961 + GFF1246 0.80 -1.5
497,961 + GFF1246 0.80 -1.7
497,961 + GFF1246 0.80 -1.0
497,962 - GFF1246 0.80 -2.0
498,028 + GFF1246 0.84 -2.0
498,029 - GFF1246 0.84 -2.3
498,029 - GFF1246 0.84 -1.7
498,041 + GFF1246 0.85 -2.1
498,041 + GFF1246 0.85 -1.6
498,042 - GFF1246 0.85 -1.1
498,042 - GFF1246 0.85 -1.5
498,149 + -1.5
498,230 + -2.0
498,401 + -0.4
498,412 - -1.7
498,517 + GFF1247 0.13 -2.1
498,517 + GFF1247 0.13 -1.1
498,517 + GFF1247 0.13 -1.3
498,704 + GFF1247 0.26 -1.1
498,755 - GFF1247 0.29 -0.7
498,866 + GFF1247 0.37 -1.1
499,046 + GFF1247 0.49 -1.1
499,047 - GFF1247 0.49 -0.1
499,047 - GFF1247 0.49 +0.4
499,085 + GFF1247 0.52 -1.7
499,086 - GFF1247 0.52 -1.1

Or see this region's nucleotide sequence