Strain Fitness in Methylophilus sp. DMC18 around GFF1245

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1244 and GFF1245 are separated by 220 nucleotidesGFF1245 and GFF1246 are separated by 36 nucleotides GFF1244 - 1,4-alpha-glucan branching enzyme GlgB, at 492,798 to 495,014 GFF1244 GFF1245 - Glucose-1-phosphate adenylyltransferase, at 495,235 to 496,557 GFF1245 GFF1246 - hypothetical protein, at 496,594 to 498,297 GFF1246 Position (kb) 495 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1at 494.236 kb on - strand, within GFF1244at 494.248 kb on + strand, within GFF1244at 494.256 kb on - strand, within GFF1244at 494.256 kb on - strand, within GFF1244at 494.318 kb on + strand, within GFF1244at 494.318 kb on + strand, within GFF1244at 494.321 kb on - strand, within GFF1244at 494.337 kb on - strand, within GFF1244at 494.401 kb on + strand, within GFF1244at 494.434 kb on + strand, within GFF1244at 494.437 kb on - strand, within GFF1244at 494.541 kb on + strand, within GFF1244at 494.541 kb on + strand, within GFF1244at 494.542 kb on - strand, within GFF1244at 494.542 kb on - strand, within GFF1244at 494.542 kb on - strand, within GFF1244at 494.632 kb on + strand, within GFF1244at 494.633 kb on - strand, within GFF1244at 494.642 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.701 kb on + strand, within GFF1244at 494.702 kb on - strand, within GFF1244at 494.702 kb on - strand, within GFF1244at 494.726 kb on + strand, within GFF1244at 494.926 kb on + strandat 494.940 kb on - strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.109 kb on - strandat 495.109 kb on - strandat 495.186 kb on + strandat 495.186 kb on + strandat 495.186 kb on + strandat 495.187 kb on - strandat 495.187 kb on - strandat 495.195 kb on + strandat 495.196 kb on - strandat 495.196 kb on - strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.229 kb on - strandat 495.245 kb on + strandat 495.306 kb on + strandat 495.327 kb on + strandat 495.328 kb on - strandat 495.429 kb on + strand, within GFF1245at 495.447 kb on + strand, within GFF1245at 495.448 kb on - strand, within GFF1245at 495.456 kb on + strand, within GFF1245at 495.456 kb on + strand, within GFF1245at 495.456 kb on + strand, within GFF1245at 495.478 kb on - strand, within GFF1245at 495.494 kb on - strand, within GFF1245at 495.563 kb on - strand, within GFF1245at 495.573 kb on + strand, within GFF1245at 495.573 kb on + strand, within GFF1245at 495.573 kb on + strand, within GFF1245at 495.574 kb on - strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.632 kb on - strand, within GFF1245at 495.670 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.673 kb on - strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.700 kb on + strand, within GFF1245at 495.702 kb on + strand, within GFF1245at 495.703 kb on - strand, within GFF1245at 495.870 kb on + strand, within GFF1245at 495.871 kb on - strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.910 kb on - strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.914 kb on - strand, within GFF1245at 495.914 kb on - strand, within GFF1245at 495.915 kb on + strand, within GFF1245at 495.961 kb on + strand, within GFF1245at 495.962 kb on - strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.050 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.103 kb on + strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.104 kb on - strand, within GFF1245at 496.162 kb on + strand, within GFF1245at 496.189 kb on + strand, within GFF1245at 496.302 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.359 kb on + strand, within GFF1245at 496.360 kb on - strand, within GFF1245at 496.360 kb on - strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.361 kb on + strand, within GFF1245at 496.362 kb on - strand, within GFF1245at 496.473 kb on + strandat 496.473 kb on + strandat 496.474 kb on - strandat 496.508 kb on + strandat 496.508 kb on + strandat 496.508 kb on + strandat 496.541 kb on + strandat 496.541 kb on + strandat 496.541 kb on + strandat 496.541 kb on + strandat 496.542 kb on - strandat 496.561 kb on + strandat 496.561 kb on + strandat 496.561 kb on + strandat 496.561 kb on + strandat 496.562 kb on - strandat 496.562 kb on - strandat 496.622 kb on + strandat 496.622 kb on + strandat 496.690 kb on + strandat 496.690 kb on + strandat 496.690 kb on + strandat 496.690 kb on + strandat 496.691 kb on - strandat 496.711 kb on + strandat 496.711 kb on + strandat 496.711 kb on + strandat 496.719 kb on + strandat 496.772 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.776 kb on + strand, within GFF1246at 496.801 kb on + strand, within GFF1246at 496.802 kb on - strand, within GFF1246at 496.996 kb on - strand, within GFF1246at 497.035 kb on + strand, within GFF1246at 497.037 kb on + strand, within GFF1246at 497.037 kb on + strand, within GFF1246at 497.038 kb on - strand, within GFF1246at 497.038 kb on - strand, within GFF1246at 497.059 kb on + strand, within GFF1246at 497.254 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.257 kb on + strand, within GFF1246at 497.258 kb on - strand, within GFF1246at 497.258 kb on - strand, within GFF1246at 497.341 kb on + strand, within GFF1246at 497.405 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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494,236 - GFF1244 0.65 +0.0
494,248 + GFF1244 0.65 -0.1
494,256 - GFF1244 0.66 -1.5
494,256 - GFF1244 0.66 +0.3
494,318 + GFF1244 0.69 -0.7
494,318 + GFF1244 0.69 -0.5
494,321 - GFF1244 0.69 +0.4
494,337 - GFF1244 0.69 -2.3
494,401 + GFF1244 0.72 +0.2
494,434 + GFF1244 0.74 +0.1
494,437 - GFF1244 0.74 -0.4
494,541 + GFF1244 0.79 -1.7
494,541 + GFF1244 0.79 -1.1
494,542 - GFF1244 0.79 -0.6
494,542 - GFF1244 0.79 -1.1
494,542 - GFF1244 0.79 -1.4
494,632 + GFF1244 0.83 +0.0
494,633 - GFF1244 0.83 +0.4
494,642 - GFF1244 0.83 +0.3
494,666 - GFF1244 0.84 -3.1
494,666 - GFF1244 0.84 -1.1
494,666 - GFF1244 0.84 -2.1
494,666 - GFF1244 0.84 -2.3
494,666 - GFF1244 0.84 -0.1
494,701 + GFF1244 0.86 +0.1
494,702 - GFF1244 0.86 -1.1
494,702 - GFF1244 0.86 +0.5
494,726 + GFF1244 0.87 -1.5
494,926 + +1.4
494,940 - -1.5
495,108 + -3.2
495,108 + -2.3
495,108 + -3.1
495,108 + -1.1
495,108 + -2.1
495,109 - -3.4
495,109 - -2.0
495,186 + -2.5
495,186 + -1.3
495,186 + -2.5
495,187 - -1.1
495,187 - -1.9
495,195 + -2.6
495,196 - -2.7
495,196 - -0.7
495,228 + +0.4
495,228 + -2.4
495,228 + -2.0
495,228 + -1.1
495,228 + -0.1
495,228 + -2.3
495,229 - -1.7
495,245 + -2.1
495,306 + -2.1
495,327 + -0.7
495,328 - -2.8
495,429 + GFF1245 0.15 -0.5
495,447 + GFF1245 0.16 -2.8
495,448 - GFF1245 0.16 -1.0
495,456 + GFF1245 0.17 -0.1
495,456 + GFF1245 0.17 -2.2
495,456 + GFF1245 0.17 -2.5
495,478 - GFF1245 0.18 -2.0
495,494 - GFF1245 0.20 -1.7
495,563 - GFF1245 0.25 -2.1
495,573 + GFF1245 0.26 -1.3
495,573 + GFF1245 0.26 -2.1
495,573 + GFF1245 0.26 -1.1
495,574 - GFF1245 0.26 -1.5
495,607 + GFF1245 0.28 -2.7
495,607 + GFF1245 0.28 -2.3
495,607 + GFF1245 0.28 -1.7
495,632 - GFF1245 0.30 -2.3
495,670 + GFF1245 0.33 -1.5
495,672 + GFF1245 0.33 -1.5
495,672 + GFF1245 0.33 -1.6
495,672 + GFF1245 0.33 -1.1
495,672 + GFF1245 0.33 -2.1
495,673 - GFF1245 0.33 -2.5
495,696 + GFF1245 0.35 -2.3
495,696 + GFF1245 0.35 -3.3
495,696 + GFF1245 0.35 -2.4
495,700 + GFF1245 0.35 -1.1
495,702 + GFF1245 0.35 -1.3
495,703 - GFF1245 0.35 -1.5
495,870 + GFF1245 0.48 -1.1
495,871 - GFF1245 0.48 -0.1
495,909 + GFF1245 0.51 -1.5
495,909 + GFF1245 0.51 -1.7
495,909 + GFF1245 0.51 -1.7
495,909 + GFF1245 0.51 -1.1
495,910 - GFF1245 0.51 -0.1
495,913 + GFF1245 0.51 -2.0
495,913 + GFF1245 0.51 -1.1
495,913 + GFF1245 0.51 -0.7
495,914 - GFF1245 0.51 -0.1
495,914 - GFF1245 0.51 -2.0
495,915 + GFF1245 0.51 -1.5
495,961 + GFF1245 0.55 -1.8
495,962 - GFF1245 0.55 -1.5
496,006 + GFF1245 0.58 -1.5
496,006 + GFF1245 0.58 -1.6
496,006 + GFF1245 0.58 -2.1
496,007 - GFF1245 0.58 -2.5
496,007 - GFF1245 0.58 -2.0
496,007 - GFF1245 0.58 -3.0
496,007 - GFF1245 0.58 -0.6
496,050 + GFF1245 0.62 -1.7
496,103 + GFF1245 0.66 -1.5
496,103 + GFF1245 0.66 -1.5
496,103 + GFF1245 0.66 -2.5
496,103 + GFF1245 0.66 -1.1
496,103 + GFF1245 0.66 -1.5
496,103 + GFF1245 0.66 -2.2
496,103 + GFF1245 0.66 -1.1
496,103 + GFF1245 0.66 -1.8
496,103 + GFF1245 0.66 -1.7
496,103 + GFF1245 0.66 -1.5
496,104 - GFF1245 0.66 -2.5
496,104 - GFF1245 0.66 -1.1
496,104 - GFF1245 0.66 -1.7
496,104 - GFF1245 0.66 -1.7
496,162 + GFF1245 0.70 -0.1
496,189 + GFF1245 0.72 -2.1
496,302 + GFF1245 0.81 -0.1
496,359 + GFF1245 0.85 -1.1
496,359 + GFF1245 0.85 -1.5
496,359 + GFF1245 0.85 -1.5
496,359 + GFF1245 0.85 -1.0
496,360 - GFF1245 0.85 -0.1
496,360 - GFF1245 0.85 -1.6
496,361 + GFF1245 0.85 -0.3
496,361 + GFF1245 0.85 -2.1
496,361 + GFF1245 0.85 -3.1
496,361 + GFF1245 0.85 -0.7
496,361 + GFF1245 0.85 -1.1
496,362 - GFF1245 0.85 -1.1
496,473 + -0.6
496,473 + -0.4
496,474 - -2.8
496,508 + -0.9
496,508 + -0.4
496,508 + -3.4
496,541 + -2.8
496,541 + -1.6
496,541 + -2.1
496,541 + -2.2
496,542 - -1.1
496,561 + -2.8
496,561 + -1.8
496,561 + -2.8
496,561 + -2.6
496,562 - -2.5
496,562 - -1.1
496,622 + -1.5
496,622 + -1.0
496,690 + -1.2
496,690 + -3.1
496,690 + -1.5
496,690 + -2.3
496,691 - -2.6
496,711 + -1.7
496,711 + -1.6
496,711 + -2.5
496,719 + -1.1
496,772 + GFF1246 0.10 -1.5
496,776 + GFF1246 0.11 -1.5
496,776 + GFF1246 0.11 -1.1
496,776 + GFF1246 0.11 -1.1
496,776 + GFF1246 0.11 -2.1
496,776 + GFF1246 0.11 -1.1
496,801 + GFF1246 0.12 -2.3
496,802 - GFF1246 0.12 -3.0
496,996 - GFF1246 0.24 -1.1
497,035 + GFF1246 0.26 -1.5
497,037 + GFF1246 0.26 -1.7
497,037 + GFF1246 0.26 -1.1
497,038 - GFF1246 0.26 -2.5
497,038 - GFF1246 0.26 -1.5
497,059 + GFF1246 0.27 -1.5
497,254 + GFF1246 0.39 -1.5
497,257 + GFF1246 0.39 -1.7
497,257 + GFF1246 0.39 -2.4
497,257 + GFF1246 0.39 -0.1
497,257 + GFF1246 0.39 -1.1
497,257 + GFF1246 0.39 -0.5
497,257 + GFF1246 0.39 -1.1
497,258 - GFF1246 0.39 -1.7
497,258 - GFF1246 0.39 +0.0
497,341 + GFF1246 0.44 -1.7
497,405 + GFF1246 0.48 -1.5
497,427 + GFF1246 0.49 -1.7
497,427 + GFF1246 0.49 -0.7
497,427 + GFF1246 0.49 -0.5

Or see this region's nucleotide sequence