Strain Fitness in Methylophilus sp. DMC18 around GFF1231

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1229 and GFF1230 overlap by 4 nucleotidesGFF1230 and GFF1231 are separated by 8 nucleotidesGFF1231 and GFF1232 are separated by 123 nucleotides GFF1229 - hypothetical protein, at 474,516 to 476,003 GFF1229 GFF1230 - hypothetical protein, at 476,000 to 476,575 GFF1230 GFF1231 - hypothetical protein, at 476,584 to 477,309 GFF1231 GFF1232 - Outer membrane protein A, at 477,433 to 478,539 GFF1232 Position (kb) 476 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.660 kb on + strand, within GFF1229at 475.668 kb on + strand, within GFF1229at 475.668 kb on + strand, within GFF1229at 475.704 kb on + strand, within GFF1229at 475.705 kb on - strand, within GFF1229at 475.809 kb on + strand, within GFF1229at 475.809 kb on + strand, within GFF1229at 475.916 kb on + strandat 475.973 kb on + strandat 475.974 kb on - strandat 475.974 kb on - strandat 476.007 kb on - strandat 476.116 kb on + strand, within GFF1230at 476.116 kb on + strand, within GFF1230at 476.133 kb on + strand, within GFF1230at 476.133 kb on + strand, within GFF1230at 476.134 kb on - strand, within GFF1230at 476.154 kb on + strand, within GFF1230at 476.192 kb on - strand, within GFF1230at 476.274 kb on + strand, within GFF1230at 476.274 kb on + strand, within GFF1230at 476.274 kb on + strand, within GFF1230at 476.274 kb on + strand, within GFF1230at 476.275 kb on - strand, within GFF1230at 476.277 kb on + strand, within GFF1230at 476.359 kb on + strand, within GFF1230at 476.360 kb on - strand, within GFF1230at 476.360 kb on - strand, within GFF1230at 476.403 kb on + strand, within GFF1230at 476.459 kb on + strand, within GFF1230at 476.459 kb on + strand, within GFF1230at 476.459 kb on + strand, within GFF1230at 476.459 kb on + strand, within GFF1230at 476.460 kb on - strand, within GFF1230at 476.460 kb on - strand, within GFF1230at 476.463 kb on + strand, within GFF1230at 476.479 kb on + strand, within GFF1230at 476.480 kb on - strand, within GFF1230at 476.573 kb on + strandat 476.574 kb on - strandat 476.574 kb on - strandat 476.578 kb on - strandat 476.580 kb on - strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.583 kb on + strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.584 kb on - strandat 476.591 kb on + strandat 476.594 kb on + strandat 476.595 kb on - strandat 476.693 kb on + strand, within GFF1231at 476.693 kb on + strand, within GFF1231at 476.694 kb on - strand, within GFF1231at 476.694 kb on - strand, within GFF1231at 476.694 kb on - strand, within GFF1231at 476.719 kb on - strand, within GFF1231at 476.719 kb on - strand, within GFF1231at 476.893 kb on + strand, within GFF1231at 476.894 kb on - strand, within GFF1231at 476.915 kb on + strand, within GFF1231at 476.915 kb on + strand, within GFF1231at 476.915 kb on + strand, within GFF1231at 476.915 kb on + strand, within GFF1231at 476.916 kb on - strand, within GFF1231at 476.916 kb on - strand, within GFF1231at 476.958 kb on + strand, within GFF1231at 476.963 kb on + strand, within GFF1231at 476.977 kb on - strand, within GFF1231at 476.977 kb on - strand, within GFF1231at 477.016 kb on + strand, within GFF1231at 477.016 kb on + strand, within GFF1231at 477.016 kb on + strand, within GFF1231at 477.016 kb on + strand, within GFF1231at 477.016 kb on + strand, within GFF1231at 477.017 kb on - strand, within GFF1231at 477.017 kb on - strand, within GFF1231at 477.017 kb on - strand, within GFF1231at 477.017 kb on - strand, within GFF1231at 477.017 kb on - strand, within GFF1231at 477.041 kb on + strand, within GFF1231at 477.041 kb on + strand, within GFF1231at 477.051 kb on + strand, within GFF1231at 477.051 kb on + strand, within GFF1231at 477.052 kb on - strand, within GFF1231at 477.075 kb on + strand, within GFF1231at 477.075 kb on + strand, within GFF1231at 477.076 kb on - strand, within GFF1231at 477.076 kb on - strand, within GFF1231at 477.122 kb on + strand, within GFF1231at 477.157 kb on + strand, within GFF1231at 477.157 kb on + strand, within GFF1231at 477.157 kb on + strand, within GFF1231at 477.157 kb on + strand, within GFF1231at 477.158 kb on - strand, within GFF1231at 477.158 kb on - strand, within GFF1231at 477.158 kb on - strand, within GFF1231at 477.212 kb on + strand, within GFF1231at 477.213 kb on - strand, within GFF1231at 477.315 kb on + strandat 477.315 kb on + strandat 477.315 kb on + strandat 477.316 kb on - strandat 477.319 kb on + strandat 477.320 kb on - strandat 477.320 kb on - strandat 477.320 kb on - strandat 477.332 kb on - strandat 477.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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475,660 + GFF1229 0.77 -0.1
475,660 + GFF1229 0.77 -0.6
475,660 + GFF1229 0.77 +0.4
475,660 + GFF1229 0.77 +0.2
475,660 + GFF1229 0.77 -1.7
475,660 + GFF1229 0.77 -0.1
475,660 + GFF1229 0.77 +0.0
475,660 + GFF1229 0.77 -1.5
475,660 + GFF1229 0.77 -0.1
475,668 + GFF1229 0.77 -0.5
475,668 + GFF1229 0.77 -1.5
475,704 + GFF1229 0.80 +0.1
475,705 - GFF1229 0.80 +0.2
475,809 + GFF1229 0.87 -0.4
475,809 + GFF1229 0.87 -0.7
475,916 + +0.4
475,973 + -0.4
475,974 - -0.3
475,974 - -0.6
476,007 - +0.0
476,116 + GFF1230 0.20 -0.9
476,116 + GFF1230 0.20 -0.3
476,133 + GFF1230 0.23 -0.5
476,133 + GFF1230 0.23 -1.1
476,134 - GFF1230 0.23 -0.6
476,154 + GFF1230 0.27 +0.4
476,192 - GFF1230 0.33 +1.3
476,274 + GFF1230 0.48 +0.3
476,274 + GFF1230 0.48 -1.5
476,274 + GFF1230 0.48 -1.0
476,274 + GFF1230 0.48 -0.1
476,275 - GFF1230 0.48 -1.5
476,277 + GFF1230 0.48 +0.1
476,359 + GFF1230 0.62 +0.1
476,360 - GFF1230 0.62 -0.1
476,360 - GFF1230 0.62 -1.1
476,403 + GFF1230 0.70 -1.4
476,459 + GFF1230 0.80 -1.5
476,459 + GFF1230 0.80 +0.6
476,459 + GFF1230 0.80 -1.3
476,459 + GFF1230 0.80 -0.3
476,460 - GFF1230 0.80 +0.9
476,460 - GFF1230 0.80 +0.7
476,463 + GFF1230 0.80 -0.2
476,479 + GFF1230 0.83 -0.8
476,480 - GFF1230 0.83 -1.0
476,573 + -0.5
476,574 - -0.1
476,574 - -0.7
476,578 - +0.6
476,580 - -0.1
476,583 + -0.8
476,583 + -0.0
476,583 + -0.9
476,583 + -0.1
476,583 + -0.1
476,583 + +0.5
476,583 + -0.4
476,583 + -1.4
476,583 + -2.0
476,583 + -0.4
476,583 + -1.8
476,583 + +0.7
476,583 + -1.0
476,584 - -0.4
476,584 - -0.5
476,584 - -1.1
476,584 - -2.3
476,584 - -1.1
476,584 - -1.0
476,584 - -0.1
476,584 - +0.5
476,584 - -0.1
476,584 - -2.3
476,584 - -1.1
476,584 - -0.6
476,584 - -1.2
476,584 - +0.4
476,584 - -0.5
476,584 - +0.4
476,591 + -1.6
476,594 + -0.5
476,595 - -0.7
476,693 + GFF1231 0.15 -1.5
476,693 + GFF1231 0.15 -1.5
476,694 - GFF1231 0.15 -0.7
476,694 - GFF1231 0.15 -2.0
476,694 - GFF1231 0.15 -1.0
476,719 - GFF1231 0.19 -2.5
476,719 - GFF1231 0.19 -2.2
476,893 + GFF1231 0.43 -3.1
476,894 - GFF1231 0.43 -1.1
476,915 + GFF1231 0.46 -2.7
476,915 + GFF1231 0.46 -1.1
476,915 + GFF1231 0.46 -1.5
476,915 + GFF1231 0.46 +0.0
476,916 - GFF1231 0.46 -1.8
476,916 - GFF1231 0.46 -0.5
476,958 + GFF1231 0.52 -0.8
476,963 + GFF1231 0.52 -2.7
476,977 - GFF1231 0.54 -2.1
476,977 - GFF1231 0.54 -1.2
477,016 + GFF1231 0.60 -0.1
477,016 + GFF1231 0.60 +0.1
477,016 + GFF1231 0.60 -1.0
477,016 + GFF1231 0.60 -1.6
477,016 + GFF1231 0.60 -1.2
477,017 - GFF1231 0.60 -1.1
477,017 - GFF1231 0.60 -0.5
477,017 - GFF1231 0.60 -2.6
477,017 - GFF1231 0.60 -2.5
477,017 - GFF1231 0.60 -2.1
477,041 + GFF1231 0.63 -2.7
477,041 + GFF1231 0.63 -1.9
477,051 + GFF1231 0.64 -1.4
477,051 + GFF1231 0.64 -0.4
477,052 - GFF1231 0.64 -0.1
477,075 + GFF1231 0.68 -2.5
477,075 + GFF1231 0.68 +0.4
477,076 - GFF1231 0.68 -1.6
477,076 - GFF1231 0.68 -0.1
477,122 + GFF1231 0.74 -1.9
477,157 + GFF1231 0.79 -1.1
477,157 + GFF1231 0.79 -1.3
477,157 + GFF1231 0.79 -0.1
477,157 + GFF1231 0.79 -1.8
477,158 - GFF1231 0.79 -1.7
477,158 - GFF1231 0.79 -2.3
477,158 - GFF1231 0.79 -2.3
477,212 + GFF1231 0.87 -1.5
477,213 - GFF1231 0.87 -1.5
477,315 + +0.3
477,315 + +0.4
477,315 + -0.1
477,316 - -1.0
477,319 + -1.1
477,320 - +0.2
477,320 - -1.1
477,320 - -0.1
477,332 - -0.1
477,332 - -1.5

Or see this region's nucleotide sequence