Strain Fitness in Methylophilus sp. DMC18 around GFF1213

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1211 and GFF1212 are separated by 44 nucleotidesGFF1212 and GFF1213 are separated by 46 nucleotidesGFF1213 and GFF1214 overlap by 1 nucleotidesGFF1214 and GFF1215 are separated by 158 nucleotides GFF1211 - hypothetical protein, at 458,559 to 458,996 GFF1211 GFF1212 - Outer membrane protein assembly factor BamD, at 459,041 to 459,874 GFF1212 GFF1213 - Ribosomal large subunit pseudouridine synthase D, at 459,921 to 461,051 GFF1213 GFF1214 - Polyphenol oxidase, at 461,051 to 461,779 GFF1214 GFF1215 - 5'-nucleotidase, at 461,938 to 462,603 GFF1215 Position (kb) 459 460 461 462Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 459.025 kb on - strandat 459.042 kb on + strandat 459.042 kb on + strandat 459.042 kb on + strandat 459.043 kb on - strandat 459.043 kb on - strandat 459.043 kb on - strandat 459.043 kb on - strandat 459.045 kb on + strandat 459.045 kb on + strandat 459.045 kb on + strandat 459.046 kb on - strandat 459.046 kb on - strandat 459.047 kb on + strandat 459.106 kb on + strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.113 kb on - strandat 459.120 kb on + strandat 459.120 kb on + strandat 459.120 kb on + strandat 459.120 kb on + strandat 459.121 kb on - strandat 459.121 kb on - strandat 459.915 kb on + strandat 459.915 kb on + strandat 459.915 kb on + strandat 460.056 kb on - strand, within GFF1213at 460.224 kb on - strand, within GFF1213at 460.484 kb on + strand, within GFF1213at 460.599 kb on - strand, within GFF1213at 460.602 kb on + strand, within GFF1213at 460.603 kb on - strand, within GFF1213at 460.693 kb on - strand, within GFF1213at 460.699 kb on + strand, within GFF1213at 460.700 kb on - strand, within GFF1213at 460.862 kb on - strand, within GFF1213at 460.864 kb on + strand, within GFF1213at 460.871 kb on + strand, within GFF1213at 461.049 kb on + strandat 461.049 kb on + strandat 461.049 kb on + strandat 461.049 kb on + strandat 461.050 kb on - strandat 461.068 kb on + strandat 461.068 kb on + strandat 461.069 kb on - strandat 461.134 kb on + strand, within GFF1214at 461.135 kb on - strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.147 kb on + strand, within GFF1214at 461.148 kb on - strand, within GFF1214at 461.148 kb on - strand, within GFF1214at 461.148 kb on - strand, within GFF1214at 461.214 kb on + strand, within GFF1214at 461.214 kb on + strand, within GFF1214at 461.214 kb on + strand, within GFF1214at 461.215 kb on - strand, within GFF1214at 461.225 kb on + strand, within GFF1214at 461.225 kb on + strand, within GFF1214at 461.225 kb on + strand, within GFF1214at 461.225 kb on + strand, within GFF1214at 461.225 kb on + strand, within GFF1214at 461.226 kb on - strand, within GFF1214at 461.274 kb on + strand, within GFF1214at 461.275 kb on - strand, within GFF1214at 461.289 kb on + strand, within GFF1214at 461.289 kb on + strand, within GFF1214at 461.289 kb on + strand, within GFF1214at 461.290 kb on - strand, within GFF1214at 461.323 kb on + strand, within GFF1214at 461.324 kb on - strand, within GFF1214at 461.324 kb on - strand, within GFF1214at 461.376 kb on + strand, within GFF1214at 461.376 kb on + strand, within GFF1214at 461.377 kb on - strand, within GFF1214at 461.379 kb on + strand, within GFF1214at 461.379 kb on + strand, within GFF1214at 461.379 kb on + strand, within GFF1214at 461.380 kb on - strand, within GFF1214at 461.380 kb on - strand, within GFF1214at 461.380 kb on - strand, within GFF1214at 461.380 kb on - strand, within GFF1214at 461.463 kb on + strand, within GFF1214at 461.563 kb on + strand, within GFF1214at 461.630 kb on + strand, within GFF1214at 461.630 kb on + strand, within GFF1214at 461.630 kb on + strand, within GFF1214at 461.630 kb on + strand, within GFF1214at 461.630 kb on + strand, within GFF1214at 461.630 kb on + strand, within GFF1214at 461.631 kb on - strand, within GFF1214at 461.631 kb on - strand, within GFF1214at 461.631 kb on - strand, within GFF1214at 461.631 kb on - strand, within GFF1214at 461.631 kb on - strand, within GFF1214at 461.631 kb on - strand, within GFF1214at 461.678 kb on + strand, within GFF1214at 461.695 kb on + strand, within GFF1214at 461.695 kb on + strand, within GFF1214at 461.695 kb on + strand, within GFF1214at 461.696 kb on - strand, within GFF1214at 461.696 kb on - strand, within GFF1214at 461.696 kb on - strand, within GFF1214at 461.777 kb on + strandat 461.819 kb on + strandat 461.819 kb on + strandat 461.819 kb on + strandat 461.819 kb on + strandat 461.820 kb on - strandat 461.820 kb on - strandat 461.820 kb on - strandat 461.842 kb on + strandat 461.843 kb on - strandat 461.852 kb on + strandat 461.853 kb on - strandat 461.853 kb on - strandat 461.853 kb on - strandat 461.860 kb on + strandat 461.925 kb on + strandat 461.925 kb on + strandat 461.926 kb on - strandat 461.932 kb on + strandat 461.932 kb on + strandat 461.932 kb on + strandat 461.932 kb on + strandat 461.933 kb on - strandat 461.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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459,025 - +0.4
459,042 + -1.5
459,042 + +0.5
459,042 + -1.7
459,043 - -1.1
459,043 - +0.1
459,043 - -1.1
459,043 - +0.9
459,045 + -0.5
459,045 + -1.1
459,045 + -0.3
459,046 - +0.1
459,046 - -0.6
459,047 + +0.1
459,106 + -2.6
459,107 - -1.0
459,107 - +0.1
459,107 - +0.0
459,107 - -1.3
459,107 - -1.1
459,107 - -1.0
459,113 - -0.6
459,120 + +0.6
459,120 + -2.0
459,120 + +0.4
459,120 + -0.4
459,121 - +0.5
459,121 - -1.7
459,915 + -0.1
459,915 + -2.8
459,915 + -0.6
460,056 - GFF1213 0.12 -2.0
460,224 - GFF1213 0.27 -0.1
460,484 + GFF1213 0.50 -0.1
460,599 - GFF1213 0.60 -2.0
460,602 + GFF1213 0.60 -1.6
460,603 - GFF1213 0.60 -0.4
460,693 - GFF1213 0.68 -0.1
460,699 + GFF1213 0.69 -1.1
460,700 - GFF1213 0.69 -1.1
460,862 - GFF1213 0.83 -0.7
460,864 + GFF1213 0.83 -2.5
460,871 + GFF1213 0.84 -0.1
461,049 + +0.7
461,049 + +0.2
461,049 + -0.3
461,049 + -0.1
461,050 - -0.1
461,068 + -2.3
461,068 + -0.3
461,069 - +0.4
461,134 + GFF1214 0.11 -1.0
461,135 - GFF1214 0.12 -1.6
461,147 + GFF1214 0.13 +0.4
461,147 + GFF1214 0.13 +0.1
461,147 + GFF1214 0.13 -1.2
461,147 + GFF1214 0.13 +0.4
461,147 + GFF1214 0.13 -1.3
461,147 + GFF1214 0.13 -0.4
461,147 + GFF1214 0.13 +1.3
461,148 - GFF1214 0.13 -0.7
461,148 - GFF1214 0.13 -1.3
461,148 - GFF1214 0.13 -2.1
461,214 + GFF1214 0.22 -0.2
461,214 + GFF1214 0.22 -0.7
461,214 + GFF1214 0.22 +0.1
461,215 - GFF1214 0.22 -0.5
461,225 + GFF1214 0.24 -0.3
461,225 + GFF1214 0.24 +0.4
461,225 + GFF1214 0.24 +0.1
461,225 + GFF1214 0.24 -2.1
461,225 + GFF1214 0.24 -1.5
461,226 - GFF1214 0.24 -1.1
461,274 + GFF1214 0.31 +0.1
461,275 - GFF1214 0.31 -0.1
461,289 + GFF1214 0.33 -0.3
461,289 + GFF1214 0.33 -1.7
461,289 + GFF1214 0.33 -1.1
461,290 - GFF1214 0.33 -0.5
461,323 + GFF1214 0.37 -0.8
461,324 - GFF1214 0.37 -1.7
461,324 - GFF1214 0.37 +0.0
461,376 + GFF1214 0.45 -0.5
461,376 + GFF1214 0.45 -1.7
461,377 - GFF1214 0.45 -0.9
461,379 + GFF1214 0.45 -1.5
461,379 + GFF1214 0.45 -0.1
461,379 + GFF1214 0.45 -1.5
461,380 - GFF1214 0.45 +0.9
461,380 - GFF1214 0.45 -0.3
461,380 - GFF1214 0.45 -0.1
461,380 - GFF1214 0.45 +2.0
461,463 + GFF1214 0.57 -0.3
461,563 + GFF1214 0.70 -0.4
461,630 + GFF1214 0.79 -1.1
461,630 + GFF1214 0.79 -0.7
461,630 + GFF1214 0.79 +0.0
461,630 + GFF1214 0.79 -0.9
461,630 + GFF1214 0.79 -0.2
461,630 + GFF1214 0.79 -0.5
461,631 - GFF1214 0.80 +0.3
461,631 - GFF1214 0.80 -1.0
461,631 - GFF1214 0.80 -0.8
461,631 - GFF1214 0.80 -0.2
461,631 - GFF1214 0.80 -1.0
461,631 - GFF1214 0.80 +0.9
461,678 + GFF1214 0.86 -0.9
461,695 + GFF1214 0.88 -1.1
461,695 + GFF1214 0.88 -0.5
461,695 + GFF1214 0.88 -0.1
461,696 - GFF1214 0.88 -1.1
461,696 - GFF1214 0.88 +0.6
461,696 - GFF1214 0.88 -1.4
461,777 + +1.1
461,819 + -0.7
461,819 + -1.0
461,819 + -0.5
461,819 + -0.5
461,820 - +0.4
461,820 - -0.4
461,820 - -0.1
461,842 + +0.3
461,843 - -0.1
461,852 + -1.1
461,853 - +0.9
461,853 - -0.6
461,853 - -2.0
461,860 + -1.5
461,925 + +0.9
461,925 + -1.5
461,926 - -1.4
461,932 + -2.7
461,932 + +0.7
461,932 + +0.5
461,932 + +0.3
461,933 - -1.7
461,933 - -0.1

Or see this region's nucleotide sequence