Strain Fitness in Methylophilus sp. DMC18 around GFF1194

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1193 and GFF1194 overlap by 4 nucleotidesGFF1194 and GFF1195 are separated by 2 nucleotidesGFF1195 and GFF1196 overlap by 4 nucleotides GFF1193 - hypothetical protein, at 444,629 to 445,837 GFF1193 GFF1194 - Formyltransferase/hydrolase complex Fhc subunit A, at 445,834 to 447,498 GFF1194 GFF1195 - Formyltransferase/hydrolase complex subunit D, at 447,501 to 448,427 GFF1195 GFF1196 - Formyltransferase/hydrolase complex Fhc subunit C, at 448,424 to 449,095 GFF1196 Position (kb) 445 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 444.871 kb on + strand, within GFF1193at 444.916 kb on + strand, within GFF1193at 444.916 kb on + strand, within GFF1193at 444.916 kb on + strand, within GFF1193at 444.917 kb on - strand, within GFF1193at 444.972 kb on + strand, within GFF1193at 444.975 kb on + strand, within GFF1193at 444.975 kb on + strand, within GFF1193at 445.014 kb on + strand, within GFF1193at 445.014 kb on + strand, within GFF1193at 445.015 kb on - strand, within GFF1193at 445.044 kb on + strand, within GFF1193at 445.114 kb on + strand, within GFF1193at 445.142 kb on + strand, within GFF1193at 445.165 kb on + strand, within GFF1193at 445.352 kb on + strand, within GFF1193at 445.353 kb on - strand, within GFF1193at 445.388 kb on + strand, within GFF1193at 445.404 kb on + strand, within GFF1193at 445.405 kb on - strand, within GFF1193at 445.417 kb on + strand, within GFF1193at 445.505 kb on + strand, within GFF1193at 445.513 kb on + strand, within GFF1193at 445.513 kb on + strand, within GFF1193at 445.513 kb on + strand, within GFF1193at 445.513 kb on + strand, within GFF1193at 445.513 kb on + strand, within GFF1193at 445.535 kb on - strand, within GFF1193at 445.582 kb on + strand, within GFF1193at 445.582 kb on + strand, within GFF1193at 445.582 kb on + strand, within GFF1193at 445.583 kb on - strand, within GFF1193at 445.586 kb on + strand, within GFF1193at 445.587 kb on - strand, within GFF1193at 445.587 kb on - strand, within GFF1193at 445.587 kb on - strand, within GFF1193at 445.618 kb on + strand, within GFF1193at 445.618 kb on + strand, within GFF1193at 445.781 kb on - strandat 445.807 kb on - strandat 445.807 kb on - strandat 445.820 kb on - strandat 445.857 kb on + strandat 445.857 kb on + strandat 445.903 kb on - strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.906 kb on + strandat 445.907 kb on - strandat 445.907 kb on - strandat 445.907 kb on - strandat 445.907 kb on - strandat 445.927 kb on - strandat 446.007 kb on + strand, within GFF1194at 446.007 kb on + strand, within GFF1194at 446.007 kb on + strand, within GFF1194at 446.008 kb on - strand, within GFF1194at 446.008 kb on - strand, within GFF1194at 446.013 kb on + strand, within GFF1194at 446.014 kb on - strand, within GFF1194at 446.019 kb on + strand, within GFF1194at 446.040 kb on + strand, within GFF1194at 446.164 kb on + strand, within GFF1194at 446.165 kb on - strand, within GFF1194at 446.165 kb on - strand, within GFF1194at 446.179 kb on + strand, within GFF1194at 446.179 kb on + strand, within GFF1194at 446.181 kb on + strand, within GFF1194at 446.296 kb on + strand, within GFF1194at 446.297 kb on - strand, within GFF1194at 446.348 kb on - strand, within GFF1194at 446.464 kb on + strand, within GFF1194at 446.464 kb on + strand, within GFF1194at 446.464 kb on + strand, within GFF1194at 446.465 kb on - strand, within GFF1194at 446.467 kb on + strand, within GFF1194at 446.467 kb on + strand, within GFF1194at 446.467 kb on + strand, within GFF1194at 446.467 kb on + strand, within GFF1194at 446.468 kb on - strand, within GFF1194at 446.468 kb on - strand, within GFF1194at 446.501 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.523 kb on - strand, within GFF1194at 446.526 kb on + strand, within GFF1194at 446.526 kb on + strand, within GFF1194at 446.526 kb on + strand, within GFF1194at 446.527 kb on - strand, within GFF1194at 446.527 kb on - strand, within GFF1194at 446.553 kb on + strand, within GFF1194at 446.553 kb on + strand, within GFF1194at 446.553 kb on + strand, within GFF1194at 446.554 kb on - strand, within GFF1194at 446.556 kb on + strand, within GFF1194at 446.556 kb on + strand, within GFF1194at 446.557 kb on - strand, within GFF1194at 446.637 kb on + strand, within GFF1194at 446.654 kb on - strand, within GFF1194at 446.801 kb on + strand, within GFF1194at 446.899 kb on + strand, within GFF1194at 446.900 kb on - strand, within GFF1194at 446.936 kb on + strand, within GFF1194at 446.936 kb on + strand, within GFF1194at 446.937 kb on - strand, within GFF1194at 446.948 kb on + strand, within GFF1194at 446.948 kb on + strand, within GFF1194at 446.949 kb on - strand, within GFF1194at 447.010 kb on + strand, within GFF1194at 447.010 kb on + strand, within GFF1194at 447.131 kb on - strand, within GFF1194at 447.220 kb on - strand, within GFF1194at 447.220 kb on - strand, within GFF1194at 447.283 kb on - strand, within GFF1194at 447.432 kb on + strandat 447.480 kb on + strandat 447.486 kb on + strandat 447.500 kb on + strandat 447.501 kb on - strandat 447.508 kb on + strandat 447.508 kb on + strandat 447.509 kb on - strandat 447.509 kb on - strandat 447.523 kb on + strandat 447.548 kb on + strandat 447.548 kb on + strandat 447.548 kb on + strandat 447.548 kb on + strandat 447.549 kb on - strandat 447.549 kb on - strandat 447.551 kb on + strandat 447.566 kb on + strandat 447.575 kb on + strandat 447.600 kb on + strand, within GFF1195at 447.600 kb on + strand, within GFF1195at 447.600 kb on + strand, within GFF1195at 447.600 kb on + strand, within GFF1195at 447.602 kb on + strand, within GFF1195at 447.602 kb on + strand, within GFF1195at 447.603 kb on - strand, within GFF1195at 447.716 kb on + strand, within GFF1195at 447.717 kb on - strand, within GFF1195at 447.717 kb on - strand, within GFF1195at 447.936 kb on - strand, within GFF1195at 447.961 kb on + strand, within GFF1195at 448.094 kb on + strand, within GFF1195at 448.094 kb on + strand, within GFF1195at 448.166 kb on + strand, within GFF1195at 448.193 kb on + strand, within GFF1195at 448.343 kb on + strandat 448.344 kb on - strandat 448.344 kb on - strandat 448.356 kb on - strandat 448.359 kb on + strandat 448.437 kb on + strandat 448.437 kb on + strandat 448.437 kb on + strandat 448.438 kb on - strandat 448.438 kb on - strandat 448.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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444,871 + GFF1193 0.20 -0.9
444,916 + GFF1193 0.24 -1.1
444,916 + GFF1193 0.24 -1.0
444,916 + GFF1193 0.24 -1.5
444,917 - GFF1193 0.24 -2.2
444,972 + GFF1193 0.28 -2.8
444,975 + GFF1193 0.29 -1.1
444,975 + GFF1193 0.29 -2.1
445,014 + GFF1193 0.32 -0.5
445,014 + GFF1193 0.32 -1.6
445,015 - GFF1193 0.32 -1.1
445,044 + GFF1193 0.34 -2.0
445,114 + GFF1193 0.40 -1.7
445,142 + GFF1193 0.42 -1.7
445,165 + GFF1193 0.44 -3.4
445,352 + GFF1193 0.60 -1.1
445,353 - GFF1193 0.60 -1.1
445,388 + GFF1193 0.63 -1.3
445,404 + GFF1193 0.64 -1.5
445,405 - GFF1193 0.64 -1.6
445,417 + GFF1193 0.65 -1.7
445,505 + GFF1193 0.72 -4.4
445,513 + GFF1193 0.73 -1.7
445,513 + GFF1193 0.73 -1.1
445,513 + GFF1193 0.73 -1.7
445,513 + GFF1193 0.73 +0.4
445,513 + GFF1193 0.73 -0.5
445,535 - GFF1193 0.75 -1.4
445,582 + GFF1193 0.79 -1.2
445,582 + GFF1193 0.79 -1.9
445,582 + GFF1193 0.79 -2.0
445,583 - GFF1193 0.79 -1.0
445,586 + GFF1193 0.79 -2.0
445,587 - GFF1193 0.79 -2.1
445,587 - GFF1193 0.79 -0.5
445,587 - GFF1193 0.79 -2.2
445,618 + GFF1193 0.82 -0.1
445,618 + GFF1193 0.82 -2.0
445,781 - -1.3
445,807 - -0.6
445,807 - +0.1
445,820 - +0.4
445,857 + -1.1
445,857 + -1.5
445,903 - -1.1
445,906 + -1.1
445,906 + -2.3
445,906 + -2.5
445,906 + -1.3
445,906 + -1.7
445,906 + -1.4
445,906 + -1.6
445,906 + -0.5
445,906 + +0.4
445,906 + -1.1
445,906 + -1.5
445,907 - -1.6
445,907 - -0.5
445,907 - -2.0
445,907 - -1.7
445,927 - -1.3
446,007 + GFF1194 0.10 -1.5
446,007 + GFF1194 0.10 -1.1
446,007 + GFF1194 0.10 -2.4
446,008 - GFF1194 0.10 -1.1
446,008 - GFF1194 0.10 -0.9
446,013 + GFF1194 0.11 -2.3
446,014 - GFF1194 0.11 +0.6
446,019 + GFF1194 0.11 -0.5
446,040 + GFF1194 0.12 -2.1
446,164 + GFF1194 0.20 -2.0
446,165 - GFF1194 0.20 -2.0
446,165 - GFF1194 0.20 -1.1
446,179 + GFF1194 0.21 -2.2
446,179 + GFF1194 0.21 -2.8
446,181 + GFF1194 0.21 -3.1
446,296 + GFF1194 0.28 -1.7
446,297 - GFF1194 0.28 -2.6
446,348 - GFF1194 0.31 -2.4
446,464 + GFF1194 0.38 -3.1
446,464 + GFF1194 0.38 -1.9
446,464 + GFF1194 0.38 +0.4
446,465 - GFF1194 0.38 -2.7
446,467 + GFF1194 0.38 -1.3
446,467 + GFF1194 0.38 -2.2
446,467 + GFF1194 0.38 -1.1
446,467 + GFF1194 0.38 -1.1
446,468 - GFF1194 0.38 -0.1
446,468 - GFF1194 0.38 -1.1
446,501 + GFF1194 0.40 -1.8
446,522 + GFF1194 0.41 -1.1
446,522 + GFF1194 0.41 -1.0
446,522 + GFF1194 0.41 -2.3
446,522 + GFF1194 0.41 -1.1
446,522 + GFF1194 0.41 -1.3
446,523 - GFF1194 0.41 -1.5
446,526 + GFF1194 0.42 -1.5
446,526 + GFF1194 0.42 -1.7
446,526 + GFF1194 0.42 -0.5
446,527 - GFF1194 0.42 -2.0
446,527 - GFF1194 0.42 -1.5
446,553 + GFF1194 0.43 -2.3
446,553 + GFF1194 0.43 -1.7
446,553 + GFF1194 0.43 -0.1
446,554 - GFF1194 0.43 -2.9
446,556 + GFF1194 0.43 -1.6
446,556 + GFF1194 0.43 -1.1
446,557 - GFF1194 0.43 -1.1
446,637 + GFF1194 0.48 -1.0
446,654 - GFF1194 0.49 -1.0
446,801 + GFF1194 0.58 -1.0
446,899 + GFF1194 0.64 -1.7
446,900 - GFF1194 0.64 -1.1
446,936 + GFF1194 0.66 -0.7
446,936 + GFF1194 0.66 -2.1
446,937 - GFF1194 0.66 -1.7
446,948 + GFF1194 0.67 -0.3
446,948 + GFF1194 0.67 -1.1
446,949 - GFF1194 0.67 -1.0
447,010 + GFF1194 0.71 -0.4
447,010 + GFF1194 0.71 -2.0
447,131 - GFF1194 0.78 -0.7
447,220 - GFF1194 0.83 -1.3
447,220 - GFF1194 0.83 -0.5
447,283 - GFF1194 0.87 -3.5
447,432 + -1.6
447,480 + -0.6
447,486 + -0.6
447,500 + -0.5
447,501 - -3.1
447,508 + -1.1
447,508 + -1.1
447,509 - -0.7
447,509 - -1.1
447,523 + -1.6
447,548 + -2.6
447,548 + -1.7
447,548 + -1.3
447,548 + -1.5
447,549 - -1.6
447,549 - -0.6
447,551 + -2.2
447,566 + -1.1
447,575 + -0.1
447,600 + GFF1195 0.11 -1.4
447,600 + GFF1195 0.11 -0.6
447,600 + GFF1195 0.11 -2.0
447,600 + GFF1195 0.11 -1.5
447,602 + GFF1195 0.11 -0.1
447,602 + GFF1195 0.11 -2.1
447,603 - GFF1195 0.11 -2.3
447,716 + GFF1195 0.23 -2.1
447,717 - GFF1195 0.23 -1.1
447,717 - GFF1195 0.23 -1.5
447,936 - GFF1195 0.47 -1.0
447,961 + GFF1195 0.50 +0.1
448,094 + GFF1195 0.64 -1.5
448,094 + GFF1195 0.64 -2.0
448,166 + GFF1195 0.72 -1.7
448,193 + GFF1195 0.75 -1.8
448,343 + -2.3
448,344 - -1.1
448,344 - -2.1
448,356 - -0.7
448,359 + -1.1
448,437 + -2.5
448,437 + -1.1
448,437 + -1.0
448,438 - -0.5
448,438 - -0.6
448,438 - -2.0

Or see this region's nucleotide sequence