Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1189 and GFF1190 are separated by 0 nucleotides GFF1190 and GFF1191 are separated by 3 nucleotides GFF1191 and GFF1192 are separated by 54 nucleotides GFF1192 and GFF1193 are separated by 236 nucleotides
GFF1189 - Cytoskeleton protein RodZ, at 440,736 to 442,010
GFF1189
GFF1190 - hypothetical protein, at 442,011 to 442,811
GFF1190
GFF1191 - Dual-specificity RNA methyltransferase RlmN, at 442,815 to 443,933
GFF1191
GFF1192 - Nucleoside diphosphate kinase, at 443,988 to 444,392
GFF1192
GFF1193 - hypothetical protein, at 444,629 to 445,837
GFF1193
Position (kb) 442
443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 442.079 kb on - strand at 442.082 kb on - strand at 442.082 kb on - strand at 442.105 kb on - strand, within GFF1190 at 442.105 kb on - strand, within GFF1190 at 442.105 kb on - strand, within GFF1190 at 442.105 kb on - strand, within GFF1190 at 442.105 kb on - strand, within GFF1190 at 442.105 kb on - strand, within GFF1190 at 442.105 kb on - strand, within GFF1190 at 442.167 kb on - strand, within GFF1190 at 442.167 kb on - strand, within GFF1190 at 442.232 kb on - strand, within GFF1190 at 442.232 kb on - strand, within GFF1190 at 442.405 kb on + strand, within GFF1190 at 442.436 kb on - strand, within GFF1190 at 442.436 kb on - strand, within GFF1190 at 442.436 kb on - strand, within GFF1190 at 442.537 kb on - strand, within GFF1190 at 442.559 kb on - strand, within GFF1190 at 442.703 kb on - strand, within GFF1190 at 442.759 kb on - strand at 442.831 kb on - strand at 442.831 kb on - strand at 442.923 kb on - strand at 442.923 kb on - strand at 442.954 kb on - strand, within GFF1191 at 442.954 kb on - strand, within GFF1191 at 442.954 kb on - strand, within GFF1191 at 442.958 kb on + strand, within GFF1191 at 442.959 kb on - strand, within GFF1191 at 443.120 kb on - strand, within GFF1191 at 443.120 kb on - strand, within GFF1191 at 443.158 kb on + strand, within GFF1191 at 443.248 kb on - strand, within GFF1191 at 443.248 kb on - strand, within GFF1191 at 443.248 kb on - strand, within GFF1191 at 443.341 kb on - strand, within GFF1191 at 443.442 kb on - strand, within GFF1191 at 443.442 kb on - strand, within GFF1191 at 443.508 kb on + strand, within GFF1191 at 443.509 kb on - strand, within GFF1191 at 443.661 kb on - strand, within GFF1191 at 443.661 kb on - strand, within GFF1191 at 443.796 kb on - strand, within GFF1191 at 443.937 kb on + strand at 443.938 kb on - strand at 443.938 kb on - strand at 443.944 kb on - strand at 444.435 kb on - strand at 444.435 kb on - strand at 444.448 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.468 kb on - strand at 444.468 kb on - strand at 444.468 kb on - strand at 444.468 kb on - strand at 444.488 kb on + strand at 444.489 kb on - strand at 444.496 kb on + strand at 444.500 kb on + strand at 444.501 kb on - strand at 444.528 kb on + strand at 444.533 kb on - strand at 444.550 kb on + strand at 444.596 kb on + strand at 444.597 kb on - strand at 444.597 kb on - strand at 444.597 kb on - strand at 444.600 kb on + strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.620 kb on + strand at 444.620 kb on + strand at 444.620 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.623 kb on - strand at 444.623 kb on - strand at 444.649 kb on + strand at 444.649 kb on + strand at 444.678 kb on + strand at 444.678 kb on + strand at 444.678 kb on + strand at 444.679 kb on - strand at 444.679 kb on - strand at 444.679 kb on - strand at 444.746 kb on + strand at 444.813 kb on + strand, within GFF1193 at 444.813 kb on + strand, within GFF1193 at 444.813 kb on + strand, within GFF1193 at 444.817 kb on + strand, within GFF1193 at 444.817 kb on + strand, within GFF1193 at 444.817 kb on + strand, within GFF1193 at 444.871 kb on + strand, within GFF1193 at 444.916 kb on + strand, within GFF1193 at 444.916 kb on + strand, within GFF1193 at 444.916 kb on + strand, within GFF1193 at 444.917 kb on - strand, within GFF1193
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 442,079 - -1.1 442,082 - -1.1 442,082 - -1.1 442,105 - GFF1190 0.12 -2.0 442,105 - GFF1190 0.12 -0.6 442,105 - GFF1190 0.12 -0.3 442,105 - GFF1190 0.12 +0.9 442,105 - GFF1190 0.12 -0.5 442,105 - GFF1190 0.12 -1.5 442,105 - GFF1190 0.12 +0.1 442,167 - GFF1190 0.19 -1.5 442,167 - GFF1190 0.19 -0.1 442,232 - GFF1190 0.28 -1.1 442,232 - GFF1190 0.28 -1.1 442,405 + GFF1190 0.49 -1.1 442,436 - GFF1190 0.53 -1.1 442,436 - GFF1190 0.53 -1.7 442,436 - GFF1190 0.53 -1.1 442,537 - GFF1190 0.66 +0.8 442,559 - GFF1190 0.68 -1.1 442,703 - GFF1190 0.86 -2.0 442,759 - -1.1 442,831 - +0.7 442,831 - -2.1 442,923 - -1.0 442,923 - -1.1 442,954 - GFF1191 0.12 -1.1 442,954 - GFF1191 0.12 +0.9 442,954 - GFF1191 0.12 -1.0 442,958 + GFF1191 0.13 -0.5 442,959 - GFF1191 0.13 -1.1 443,120 - GFF1191 0.27 -0.9 443,120 - GFF1191 0.27 -1.0 443,158 + GFF1191 0.31 -1.5 443,248 - GFF1191 0.39 -1.5 443,248 - GFF1191 0.39 -0.1 443,248 - GFF1191 0.39 -1.6 443,341 - GFF1191 0.47 +0.4 443,442 - GFF1191 0.56 -1.3 443,442 - GFF1191 0.56 -0.9 443,508 + GFF1191 0.62 +0.1 443,509 - GFF1191 0.62 -1.5 443,661 - GFF1191 0.76 -1.1 443,661 - GFF1191 0.76 +0.4 443,796 - GFF1191 0.88 -1.5 443,937 + -1.1 443,938 - -0.5 443,938 - -0.6 443,944 - +0.4 444,435 - +0.4 444,435 - -1.7 444,448 + -1.1 444,467 + -2.8 444,467 + -0.3 444,467 + -0.3 444,467 + -0.5 444,467 + -0.8 444,467 + -0.6 444,468 - -0.3 444,468 - +0.1 444,468 - -0.7 444,468 - +0.3 444,488 + -2.1 444,489 - -0.9 444,496 + +0.2 444,500 + -1.1 444,501 - -1.7 444,528 + +0.2 444,533 - -0.6 444,550 + +0.3 444,596 + +0.3 444,597 - -1.1 444,597 - -1.5 444,597 - -1.5 444,600 + -1.1 444,601 - -1.4 444,601 - -0.8 444,601 - +0.4 444,601 - -0.6 444,601 - -0.4 444,601 - -1.5 444,620 + -0.5 444,620 + -1.0 444,620 + -0.5 444,622 + +0.7 444,622 + -2.5 444,622 + -0.3 444,622 + -1.0 444,622 + -1.1 444,622 + -1.5 444,623 - -2.1 444,623 - -0.4 444,649 + -0.5 444,649 + -0.7 444,678 + -2.6 444,678 + -0.5 444,678 + -1.5 444,679 - -3.8 444,679 - -1.7 444,679 - -2.6 444,746 + -2.7 444,813 + GFF1193 0.15 -1.1 444,813 + GFF1193 0.15 -0.9 444,813 + GFF1193 0.15 -0.1 444,817 + GFF1193 0.16 -1.1 444,817 + GFF1193 0.16 -0.9 444,817 + GFF1193 0.16 -1.1 444,871 + GFF1193 0.20 -0.9 444,916 + GFF1193 0.24 -1.1 444,916 + GFF1193 0.24 -1.0 444,916 + GFF1193 0.24 -1.5 444,917 - GFF1193 0.24 -2.2
Or see this region's nucleotide sequence