Strain Fitness in Methylophilus sp. DMC18 around GFF1180

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1178 and GFF1179 overlap by 4 nucleotidesGFF1179 and GFF1180 are separated by 95 nucleotidesGFF1180 and GFF1181 are separated by 69 nucleotidesGFF1181 and GFF1182 are separated by 119 nucleotides GFF1178 - Pyrophosphatase PpaX, at 430,358 to 431,011 GFF1178 GFF1179 - hypothetical protein, at 431,008 to 431,358 GFF1179 GFF1180 - hypothetical protein, at 431,454 to 432,437 GFF1180 GFF1181 - hypothetical protein, at 432,507 to 432,953 GFF1181 GFF1182 - GTPase Der, at 433,073 to 434,506 GFF1182 Position (kb) 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 430.489 kb on + strand, within GFF1178at 430.490 kb on - strand, within GFF1178at 430.522 kb on - strand, within GFF1178at 430.527 kb on + strand, within GFF1178at 430.527 kb on + strand, within GFF1178at 430.528 kb on - strand, within GFF1178at 430.528 kb on - strand, within GFF1178at 430.528 kb on - strand, within GFF1178at 430.541 kb on - strand, within GFF1178at 430.577 kb on + strand, within GFF1178at 430.577 kb on + strand, within GFF1178at 430.578 kb on - strand, within GFF1178at 430.578 kb on - strand, within GFF1178at 430.585 kb on + strand, within GFF1178at 430.585 kb on + strand, within GFF1178at 430.585 kb on + strand, within GFF1178at 430.586 kb on - strand, within GFF1178at 430.586 kb on - strand, within GFF1178at 430.586 kb on - strand, within GFF1178at 430.589 kb on + strand, within GFF1178at 430.589 kb on + strand, within GFF1178at 430.589 kb on + strand, within GFF1178at 430.589 kb on + strand, within GFF1178at 430.590 kb on - strand, within GFF1178at 430.590 kb on - strand, within GFF1178at 430.592 kb on + strand, within GFF1178at 430.592 kb on + strand, within GFF1178at 430.593 kb on - strand, within GFF1178at 430.609 kb on + strand, within GFF1178at 430.609 kb on + strand, within GFF1178at 430.609 kb on + strand, within GFF1178at 430.610 kb on - strand, within GFF1178at 430.614 kb on + strand, within GFF1178at 430.614 kb on + strand, within GFF1178at 430.614 kb on + strand, within GFF1178at 430.642 kb on + strand, within GFF1178at 430.704 kb on + strand, within GFF1178at 430.705 kb on - strand, within GFF1178at 430.708 kb on + strand, within GFF1178at 430.708 kb on + strand, within GFF1178at 430.708 kb on + strand, within GFF1178at 430.709 kb on - strand, within GFF1178at 430.744 kb on + strand, within GFF1178at 430.744 kb on + strand, within GFF1178at 430.744 kb on + strand, within GFF1178at 430.745 kb on - strand, within GFF1178at 430.837 kb on + strand, within GFF1178at 430.837 kb on + strand, within GFF1178at 430.837 kb on + strand, within GFF1178at 430.837 kb on + strand, within GFF1178at 430.837 kb on + strand, within GFF1178at 430.838 kb on - strand, within GFF1178at 430.838 kb on - strand, within GFF1178at 430.848 kb on + strand, within GFF1178at 430.862 kb on + strand, within GFF1178at 430.862 kb on + strand, within GFF1178at 430.862 kb on + strand, within GFF1178at 430.863 kb on - strand, within GFF1178at 430.863 kb on - strand, within GFF1178at 430.863 kb on - strand, within GFF1178at 430.863 kb on - strand, within GFF1178at 430.863 kb on - strand, within GFF1178at 430.913 kb on + strand, within GFF1178at 430.913 kb on + strand, within GFF1178at 430.914 kb on - strand, within GFF1178at 430.938 kb on + strand, within GFF1178at 430.938 kb on + strand, within GFF1178at 430.939 kb on - strand, within GFF1178at 430.946 kb on + strandat 430.947 kb on - strandat 430.958 kb on + strandat 430.958 kb on + strandat 430.983 kb on + strandat 430.984 kb on - strandat 430.984 kb on - strandat 430.984 kb on - strandat 431.134 kb on + strand, within GFF1179at 431.140 kb on + strand, within GFF1179at 431.356 kb on + strandat 431.389 kb on + strandat 431.389 kb on + strandat 431.389 kb on + strandat 431.390 kb on - strandat 431.390 kb on - strandat 431.421 kb on + strandat 431.421 kb on + strandat 431.422 kb on - strandat 431.422 kb on - strandat 431.426 kb on + strandat 431.426 kb on + strandat 431.426 kb on + strandat 431.427 kb on - strandat 431.471 kb on + strandat 431.471 kb on + strandat 431.609 kb on + strand, within GFF1180at 431.609 kb on + strand, within GFF1180at 431.609 kb on + strand, within GFF1180at 431.609 kb on + strand, within GFF1180at 431.613 kb on + strand, within GFF1180at 431.613 kb on + strand, within GFF1180at 431.613 kb on + strand, within GFF1180at 431.613 kb on + strand, within GFF1180at 431.613 kb on + strand, within GFF1180at 431.614 kb on - strand, within GFF1180at 431.672 kb on + strand, within GFF1180at 431.672 kb on + strand, within GFF1180at 431.789 kb on + strand, within GFF1180at 431.789 kb on + strand, within GFF1180at 431.789 kb on + strand, within GFF1180at 431.789 kb on + strand, within GFF1180at 431.789 kb on + strand, within GFF1180at 431.790 kb on - strand, within GFF1180at 431.792 kb on + strand, within GFF1180at 431.792 kb on + strand, within GFF1180at 431.793 kb on - strand, within GFF1180at 431.801 kb on + strand, within GFF1180at 431.892 kb on + strand, within GFF1180at 431.893 kb on - strand, within GFF1180at 431.893 kb on - strand, within GFF1180at 431.909 kb on + strand, within GFF1180at 431.909 kb on + strand, within GFF1180at 431.928 kb on + strand, within GFF1180at 431.928 kb on + strand, within GFF1180at 431.929 kb on - strand, within GFF1180at 431.931 kb on + strand, within GFF1180at 431.931 kb on + strand, within GFF1180at 431.931 kb on + strand, within GFF1180at 431.931 kb on + strand, within GFF1180at 431.931 kb on + strand, within GFF1180at 431.931 kb on + strand, within GFF1180at 431.932 kb on - strand, within GFF1180at 431.932 kb on - strand, within GFF1180at 431.932 kb on - strand, within GFF1180at 431.956 kb on + strand, within GFF1180at 431.975 kb on + strand, within GFF1180at 432.043 kb on + strand, within GFF1180at 432.161 kb on + strand, within GFF1180at 432.218 kb on + strand, within GFF1180at 432.248 kb on + strand, within GFF1180at 432.288 kb on + strand, within GFF1180at 432.288 kb on + strand, within GFF1180at 432.288 kb on + strand, within GFF1180at 432.288 kb on + strand, within GFF1180at 432.288 kb on + strand, within GFF1180at 432.288 kb on + strand, within GFF1180at 432.289 kb on - strand, within GFF1180at 432.289 kb on - strand, within GFF1180at 432.435 kb on + strandat 432.489 kb on + strandat 432.577 kb on - strand, within GFF1181at 432.577 kb on - strand, within GFF1181at 432.586 kb on - strand, within GFF1181at 432.597 kb on + strand, within GFF1181at 432.597 kb on + strand, within GFF1181at 432.597 kb on + strand, within GFF1181at 432.646 kb on + strand, within GFF1181at 432.646 kb on + strand, within GFF1181at 432.646 kb on + strand, within GFF1181at 432.647 kb on - strand, within GFF1181at 432.685 kb on + strand, within GFF1181at 432.685 kb on + strand, within GFF1181at 432.686 kb on - strand, within GFF1181at 432.686 kb on - strand, within GFF1181at 432.686 kb on - strand, within GFF1181at 432.781 kb on + strand, within GFF1181at 432.781 kb on + strand, within GFF1181at 432.782 kb on - strand, within GFF1181at 432.782 kb on - strand, within GFF1181at 432.917 kb on + strandat 432.918 kb on - strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.932 kb on + strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.933 kb on - strandat 432.950 kb on - strandat 432.968 kb on - strandat 432.968 kb on - strandat 432.968 kb on - strandat 432.968 kb on - strandat 433.045 kb on + strandat 433.045 kb on + strandat 433.046 kb on - strandat 433.046 kb on - strandat 433.087 kb on + strandat 433.087 kb on + strandat 433.088 kb on - strandat 433.132 kb on + strandat 433.132 kb on + strandat 433.133 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
430,489 + GFF1178 0.20 -0.1
430,490 - GFF1178 0.20 -1.1
430,522 - GFF1178 0.25 -0.5
430,527 + GFF1178 0.26 +0.4
430,527 + GFF1178 0.26 -0.6
430,528 - GFF1178 0.26 +0.3
430,528 - GFF1178 0.26 -0.6
430,528 - GFF1178 0.26 -1.5
430,541 - GFF1178 0.28 -0.7
430,577 + GFF1178 0.33 -0.5
430,577 + GFF1178 0.33 -1.6
430,578 - GFF1178 0.34 +0.2
430,578 - GFF1178 0.34 -1.1
430,585 + GFF1178 0.35 -1.1
430,585 + GFF1178 0.35 -1.3
430,585 + GFF1178 0.35 -1.1
430,586 - GFF1178 0.35 -0.5
430,586 - GFF1178 0.35 -0.3
430,586 - GFF1178 0.35 +0.4
430,589 + GFF1178 0.35 -1.1
430,589 + GFF1178 0.35 -0.5
430,589 + GFF1178 0.35 -0.8
430,589 + GFF1178 0.35 +0.1
430,590 - GFF1178 0.35 -1.5
430,590 - GFF1178 0.35 -0.1
430,592 + GFF1178 0.36 -0.0
430,592 + GFF1178 0.36 +0.5
430,593 - GFF1178 0.36 -0.1
430,609 + GFF1178 0.38 -0.7
430,609 + GFF1178 0.38 -1.0
430,609 + GFF1178 0.38 -1.1
430,610 - GFF1178 0.39 -0.9
430,614 + GFF1178 0.39 -1.5
430,614 + GFF1178 0.39 +1.3
430,614 + GFF1178 0.39 -1.7
430,642 + GFF1178 0.43 +0.3
430,704 + GFF1178 0.53 -0.5
430,705 - GFF1178 0.53 -0.4
430,708 + GFF1178 0.54 -0.2
430,708 + GFF1178 0.54 +0.9
430,708 + GFF1178 0.54 -0.6
430,709 - GFF1178 0.54 +0.2
430,744 + GFF1178 0.59 +0.4
430,744 + GFF1178 0.59 -1.5
430,744 + GFF1178 0.59 -0.5
430,745 - GFF1178 0.59 -0.9
430,837 + GFF1178 0.73 -0.4
430,837 + GFF1178 0.73 -0.9
430,837 + GFF1178 0.73 +0.1
430,837 + GFF1178 0.73 -0.5
430,837 + GFF1178 0.73 -0.4
430,838 - GFF1178 0.73 -0.8
430,838 - GFF1178 0.73 -0.7
430,848 + GFF1178 0.75 -0.7
430,862 + GFF1178 0.77 -0.3
430,862 + GFF1178 0.77 -0.5
430,862 + GFF1178 0.77 +0.3
430,863 - GFF1178 0.77 -0.4
430,863 - GFF1178 0.77 -0.1
430,863 - GFF1178 0.77 +0.2
430,863 - GFF1178 0.77 -0.5
430,863 - GFF1178 0.77 -0.1
430,913 + GFF1178 0.85 +0.2
430,913 + GFF1178 0.85 +0.1
430,914 - GFF1178 0.85 -1.4
430,938 + GFF1178 0.89 -1.1
430,938 + GFF1178 0.89 -0.8
430,939 - GFF1178 0.89 +0.5
430,946 + +0.0
430,947 - -1.5
430,958 + -1.5
430,958 + -1.1
430,983 + -1.1
430,984 - -0.0
430,984 - -2.1
430,984 - -0.5
431,134 + GFF1179 0.36 +0.4
431,140 + GFF1179 0.38 -0.9
431,356 + +0.6
431,389 + -1.5
431,389 + -0.8
431,389 + -0.6
431,390 - +0.3
431,390 - -1.7
431,421 + -1.3
431,421 + +0.4
431,422 - -1.3
431,422 - -0.3
431,426 + +1.1
431,426 + +0.9
431,426 + -0.1
431,427 - -1.0
431,471 + -0.9
431,471 + -0.9
431,609 + GFF1180 0.16 -1.1
431,609 + GFF1180 0.16 -0.1
431,609 + GFF1180 0.16 -1.3
431,609 + GFF1180 0.16 -0.5
431,613 + GFF1180 0.16 -0.7
431,613 + GFF1180 0.16 -0.7
431,613 + GFF1180 0.16 -1.2
431,613 + GFF1180 0.16 +0.3
431,613 + GFF1180 0.16 -1.3
431,614 - GFF1180 0.16 -2.3
431,672 + GFF1180 0.22 -1.1
431,672 + GFF1180 0.22 -1.1
431,789 + GFF1180 0.34 -1.1
431,789 + GFF1180 0.34 -0.6
431,789 + GFF1180 0.34 -0.6
431,789 + GFF1180 0.34 -0.7
431,789 + GFF1180 0.34 -1.1
431,790 - GFF1180 0.34 -1.6
431,792 + GFF1180 0.34 -0.4
431,792 + GFF1180 0.34 -0.6
431,793 - GFF1180 0.34 -1.1
431,801 + GFF1180 0.35 -2.6
431,892 + GFF1180 0.45 +1.3
431,893 - GFF1180 0.45 -0.4
431,893 - GFF1180 0.45 +0.3
431,909 + GFF1180 0.46 -1.3
431,909 + GFF1180 0.46 -0.4
431,928 + GFF1180 0.48 -1.1
431,928 + GFF1180 0.48 -2.8
431,929 - GFF1180 0.48 -0.1
431,931 + GFF1180 0.48 +0.4
431,931 + GFF1180 0.48 -2.2
431,931 + GFF1180 0.48 -0.1
431,931 + GFF1180 0.48 -0.8
431,931 + GFF1180 0.48 +0.1
431,931 + GFF1180 0.48 -0.1
431,932 - GFF1180 0.49 +0.2
431,932 - GFF1180 0.49 -1.1
431,932 - GFF1180 0.49 +0.1
431,956 + GFF1180 0.51 +0.4
431,975 + GFF1180 0.53 -1.1
432,043 + GFF1180 0.60 -1.4
432,161 + GFF1180 0.72 -1.3
432,218 + GFF1180 0.78 -0.8
432,248 + GFF1180 0.81 -1.9
432,288 + GFF1180 0.85 -0.5
432,288 + GFF1180 0.85 -1.1
432,288 + GFF1180 0.85 -0.9
432,288 + GFF1180 0.85 -0.1
432,288 + GFF1180 0.85 -0.7
432,288 + GFF1180 0.85 -1.7
432,289 - GFF1180 0.85 -1.1
432,289 - GFF1180 0.85 -0.1
432,435 + -0.0
432,489 + -0.5
432,577 - GFF1181 0.16 -0.5
432,577 - GFF1181 0.16 -1.6
432,586 - GFF1181 0.18 -1.4
432,597 + GFF1181 0.20 +0.4
432,597 + GFF1181 0.20 -1.4
432,597 + GFF1181 0.20 +0.6
432,646 + GFF1181 0.31 -0.3
432,646 + GFF1181 0.31 -1.1
432,646 + GFF1181 0.31 -1.2
432,647 - GFF1181 0.31 -1.9
432,685 + GFF1181 0.40 -0.7
432,685 + GFF1181 0.40 -0.7
432,686 - GFF1181 0.40 -0.7
432,686 - GFF1181 0.40 -1.7
432,686 - GFF1181 0.40 -0.8
432,781 + GFF1181 0.61 +0.4
432,781 + GFF1181 0.61 -3.0
432,782 - GFF1181 0.62 -0.9
432,782 - GFF1181 0.62 -0.7
432,917 + -1.5
432,918 - -1.0
432,932 + +1.4
432,932 + -0.5
432,932 + +0.1
432,932 + +0.3
432,932 + +0.9
432,932 + -0.1
432,932 + -0.8
432,932 + +0.2
432,932 + -1.3
432,932 + -1.5
432,933 - -1.0
432,933 - -0.6
432,933 - -1.3
432,933 - -1.1
432,933 - -0.9
432,933 - -1.4
432,933 - -0.7
432,933 - -0.1
432,933 - +0.2
432,933 - -1.5
432,950 - -1.1
432,968 - -0.9
432,968 - -1.0
432,968 - -0.5
432,968 - -1.5
433,045 + -1.3
433,045 + +1.7
433,046 - -0.8
433,046 - -1.1
433,087 + -1.0
433,087 + -0.3
433,088 - +2.0
433,132 + -0.3
433,132 + +0.5
433,133 - -1.1

Or see this region's nucleotide sequence