Strain Fitness in Methylophilus sp. DMC18 around GFF1170

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1169 and GFF1170 are separated by 112 nucleotidesGFF1170 and GFF1171 are separated by 1 nucleotidesGFF1171 and GFF1172 overlap by 4 nucleotides GFF1169 - Methanol dehydrogenase [cytochrome c] subunit 1, at 418,605 to 420,473 GFF1169 GFF1170 - Small ribosomal subunit biogenesis GTPase RsgA, at 420,586 to 421,461 GFF1170 GFF1171 - hypothetical protein, at 421,463 to 421,762 GFF1171 GFF1172 - Protease HtpX, at 421,759 to 423,006 GFF1172 Position (kb) 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.715 kb on + strand, within GFF1169at 419.715 kb on + strand, within GFF1169at 419.748 kb on + strand, within GFF1169at 419.824 kb on + strand, within GFF1169at 419.881 kb on - strand, within GFF1169at 419.882 kb on + strand, within GFF1169at 419.882 kb on + strand, within GFF1169at 419.888 kb on + strand, within GFF1169at 419.918 kb on + strand, within GFF1169at 419.918 kb on + strand, within GFF1169at 419.940 kb on + strand, within GFF1169at 419.964 kb on + strand, within GFF1169at 419.964 kb on + strand, within GFF1169at 419.983 kb on + strand, within GFF1169at 419.983 kb on + strand, within GFF1169at 419.983 kb on + strand, within GFF1169at 419.983 kb on + strand, within GFF1169at 419.983 kb on + strand, within GFF1169at 419.988 kb on - strand, within GFF1169at 419.995 kb on - strand, within GFF1169at 420.190 kb on - strand, within GFF1169at 420.194 kb on + strand, within GFF1169at 420.194 kb on + strand, within GFF1169at 420.194 kb on + strand, within GFF1169at 420.312 kb on + strandat 420.320 kb on + strandat 420.460 kb on + strandat 420.472 kb on - strandat 420.486 kb on - strandat 420.519 kb on + strandat 420.519 kb on + strandat 420.520 kb on - strandat 420.552 kb on - strandat 420.552 kb on - strandat 420.555 kb on + strandat 420.555 kb on + strandat 420.555 kb on + strandat 420.556 kb on - strandat 420.556 kb on - strandat 420.556 kb on - strandat 420.558 kb on - strandat 420.577 kb on + strandat 420.632 kb on - strandat 420.638 kb on - strandat 420.703 kb on - strand, within GFF1170at 420.736 kb on - strand, within GFF1170at 420.789 kb on - strand, within GFF1170at 420.932 kb on - strand, within GFF1170at 420.943 kb on - strand, within GFF1170at 420.943 kb on - strand, within GFF1170at 420.977 kb on - strand, within GFF1170at 421.099 kb on - strand, within GFF1170at 421.387 kb on - strandat 421.387 kb on - strandat 421.412 kb on - strandat 421.419 kb on - strandat 421.465 kb on - strandat 421.465 kb on - strandat 421.465 kb on - strandat 421.473 kb on + strandat 421.474 kb on - strandat 421.476 kb on + strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.477 kb on - strandat 421.492 kb on - strandat 421.492 kb on - strandat 421.492 kb on - strandat 421.497 kb on - strand, within GFF1171at 421.528 kb on + strand, within GFF1171at 421.528 kb on + strand, within GFF1171at 421.529 kb on - strand, within GFF1171at 421.529 kb on - strand, within GFF1171at 421.544 kb on - strand, within GFF1171at 421.544 kb on - strand, within GFF1171at 421.544 kb on - strand, within GFF1171at 421.544 kb on - strand, within GFF1171at 421.546 kb on + strand, within GFF1171at 421.546 kb on + strand, within GFF1171at 421.546 kb on + strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.547 kb on - strand, within GFF1171at 421.568 kb on + strand, within GFF1171at 421.569 kb on - strand, within GFF1171at 421.569 kb on - strand, within GFF1171at 421.569 kb on - strand, within GFF1171at 421.569 kb on - strand, within GFF1171at 421.607 kb on - strand, within GFF1171at 421.608 kb on + strand, within GFF1171at 421.609 kb on - strand, within GFF1171at 421.609 kb on - strand, within GFF1171at 421.609 kb on - strand, within GFF1171at 421.609 kb on - strand, within GFF1171at 421.609 kb on - strand, within GFF1171at 421.609 kb on - strand, within GFF1171at 421.632 kb on + strand, within GFF1171at 421.633 kb on - strand, within GFF1171at 421.633 kb on - strand, within GFF1171at 421.633 kb on - strand, within GFF1171at 421.633 kb on - strand, within GFF1171at 421.633 kb on - strand, within GFF1171at 421.766 kb on + strandat 421.766 kb on + strandat 421.767 kb on - strandat 421.767 kb on - strandat 421.767 kb on - strandat 421.767 kb on - strandat 421.767 kb on - strandat 421.815 kb on - strandat 421.815 kb on - strandat 421.815 kb on - strandat 421.815 kb on - strandat 421.849 kb on - strandat 421.849 kb on - strandat 421.873 kb on - strandat 421.953 kb on - strand, within GFF1172at 422.128 kb on - strand, within GFF1172at 422.264 kb on + strand, within GFF1172at 422.265 kb on - strand, within GFF1172at 422.265 kb on - strand, within GFF1172at 422.265 kb on - strand, within GFF1172at 422.353 kb on - strand, within GFF1172at 422.421 kb on - strand, within GFF1172at 422.434 kb on - strand, within GFF1172at 422.443 kb on - strand, within GFF1172at 422.443 kb on - strand, within GFF1172at 422.443 kb on - strand, within GFF1172

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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419,715 + GFF1169 0.59 -1.0
419,715 + GFF1169 0.59 -2.7
419,748 + GFF1169 0.61 +0.6
419,824 + GFF1169 0.65 -0.9
419,881 - GFF1169 0.68 -1.1
419,882 + GFF1169 0.68 +0.3
419,882 + GFF1169 0.68 -1.1
419,888 + GFF1169 0.69 -1.7
419,918 + GFF1169 0.70 +0.0
419,918 + GFF1169 0.70 +0.3
419,940 + GFF1169 0.71 +0.5
419,964 + GFF1169 0.73 -1.1
419,964 + GFF1169 0.73 -0.4
419,983 + GFF1169 0.74 -2.4
419,983 + GFF1169 0.74 -0.4
419,983 + GFF1169 0.74 -1.4
419,983 + GFF1169 0.74 -0.1
419,983 + GFF1169 0.74 +0.5
419,988 - GFF1169 0.74 -0.1
419,995 - GFF1169 0.74 -0.7
420,190 - GFF1169 0.85 -0.0
420,194 + GFF1169 0.85 -1.1
420,194 + GFF1169 0.85 -0.7
420,194 + GFF1169 0.85 -0.9
420,312 + -3.0
420,320 + -1.3
420,460 + -1.1
420,472 - +0.9
420,486 - -0.1
420,519 + -0.1
420,519 + +1.1
420,520 - -0.5
420,552 - -0.9
420,552 - +0.1
420,555 + -0.1
420,555 + -1.7
420,555 + -0.7
420,556 - -2.0
420,556 - +0.9
420,556 - -0.7
420,558 - -0.2
420,577 + -0.1
420,632 - -0.5
420,638 - +0.5
420,703 - GFF1170 0.13 +0.1
420,736 - GFF1170 0.17 -2.1
420,789 - GFF1170 0.23 -0.6
420,932 - GFF1170 0.39 +0.9
420,943 - GFF1170 0.41 -1.1
420,943 - GFF1170 0.41 -0.4
420,977 - GFF1170 0.45 -1.9
421,099 - GFF1170 0.59 -1.7
421,387 - -0.1
421,387 - -0.5
421,412 - +0.5
421,419 - +0.5
421,465 - -1.7
421,465 - -2.3
421,465 - +0.0
421,473 + +0.9
421,474 - -1.1
421,476 + -0.5
421,477 - -0.2
421,477 - -0.4
421,477 - -1.7
421,477 - -2.2
421,477 - -0.1
421,477 - +0.1
421,477 - -0.7
421,477 - +0.5
421,477 - -0.9
421,477 - -0.0
421,477 - -0.2
421,477 - -1.5
421,477 - -0.3
421,492 - +0.6
421,492 - -0.1
421,492 - -2.1
421,497 - GFF1171 0.11 -0.2
421,528 + GFF1171 0.22 +1.2
421,528 + GFF1171 0.22 -0.1
421,529 - GFF1171 0.22 -1.2
421,529 - GFF1171 0.22 -0.9
421,544 - GFF1171 0.27 -1.1
421,544 - GFF1171 0.27 -0.1
421,544 - GFF1171 0.27 -0.2
421,544 - GFF1171 0.27 -0.5
421,546 + GFF1171 0.28 -0.9
421,546 + GFF1171 0.28 +0.1
421,546 + GFF1171 0.28 -0.1
421,547 - GFF1171 0.28 +0.0
421,547 - GFF1171 0.28 -0.1
421,547 - GFF1171 0.28 -1.5
421,547 - GFF1171 0.28 -0.7
421,547 - GFF1171 0.28 -0.1
421,547 - GFF1171 0.28 -0.1
421,547 - GFF1171 0.28 +0.1
421,568 + GFF1171 0.35 -1.7
421,569 - GFF1171 0.35 -0.5
421,569 - GFF1171 0.35 +0.5
421,569 - GFF1171 0.35 +1.2
421,569 - GFF1171 0.35 -1.5
421,607 - GFF1171 0.48 -1.1
421,608 + GFF1171 0.48 +0.3
421,609 - GFF1171 0.49 -0.1
421,609 - GFF1171 0.49 +0.5
421,609 - GFF1171 0.49 -0.4
421,609 - GFF1171 0.49 -1.9
421,609 - GFF1171 0.49 -1.0
421,609 - GFF1171 0.49 -0.6
421,632 + GFF1171 0.56 +0.1
421,633 - GFF1171 0.57 +0.9
421,633 - GFF1171 0.57 -0.5
421,633 - GFF1171 0.57 +0.4
421,633 - GFF1171 0.57 -1.5
421,633 - GFF1171 0.57 -0.9
421,766 + -1.0
421,766 + +0.1
421,767 - -0.3
421,767 - -1.1
421,767 - -0.8
421,767 - -1.7
421,767 - +0.5
421,815 - -0.0
421,815 - +1.2
421,815 - +0.9
421,815 - +0.3
421,849 - -0.4
421,849 - +0.3
421,873 - +1.6
421,953 - GFF1172 0.16 +0.0
422,128 - GFF1172 0.30 +0.6
422,264 + GFF1172 0.40 -0.1
422,265 - GFF1172 0.41 +0.5
422,265 - GFF1172 0.41 +1.1
422,265 - GFF1172 0.41 +1.1
422,353 - GFF1172 0.48 +0.2
422,421 - GFF1172 0.53 +1.4
422,434 - GFF1172 0.54 +0.6
422,443 - GFF1172 0.55 +1.7
422,443 - GFF1172 0.55 +0.5
422,443 - GFF1172 0.55 +1.9

Or see this region's nucleotide sequence