Strain Fitness in Methylophilus sp. DMC18 around GFF1168

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1167 and GFF1168 are separated by 37 nucleotidesGFF1168 and GFF1169 are separated by 118 nucleotides GFF1167 - hypothetical protein, at 417,151 to 418,299 GFF1167 GFF1168 - hypothetical protein, at 418,337 to 418,486 GFF1168 GFF1169 - Methanol dehydrogenase [cytochrome c] subunit 1, at 418,605 to 420,473 GFF1169 Position (kb) 418 419Strain fitness (log2 ratio) -2 -1 0 1at 417.341 kb on + strand, within GFF1167at 417.383 kb on - strand, within GFF1167at 417.520 kb on - strand, within GFF1167at 417.595 kb on - strand, within GFF1167at 417.595 kb on - strand, within GFF1167at 417.679 kb on + strand, within GFF1167at 417.680 kb on - strand, within GFF1167at 417.680 kb on - strand, within GFF1167at 417.682 kb on + strand, within GFF1167at 417.683 kb on - strand, within GFF1167at 417.683 kb on - strand, within GFF1167at 417.683 kb on - strand, within GFF1167at 417.683 kb on - strand, within GFF1167at 417.683 kb on - strand, within GFF1167at 417.683 kb on - strand, within GFF1167at 417.687 kb on - strand, within GFF1167at 417.687 kb on - strand, within GFF1167at 417.753 kb on + strand, within GFF1167at 417.753 kb on + strand, within GFF1167at 417.754 kb on - strand, within GFF1167at 417.895 kb on - strand, within GFF1167at 417.895 kb on - strand, within GFF1167at 417.919 kb on + strand, within GFF1167at 417.920 kb on - strand, within GFF1167at 417.920 kb on - strand, within GFF1167at 417.920 kb on - strand, within GFF1167at 417.920 kb on - strand, within GFF1167at 417.920 kb on - strand, within GFF1167at 418.040 kb on + strand, within GFF1167at 418.041 kb on - strand, within GFF1167at 418.071 kb on - strand, within GFF1167at 418.165 kb on + strand, within GFF1167at 418.166 kb on - strand, within GFF1167at 418.166 kb on - strand, within GFF1167at 418.166 kb on - strand, within GFF1167at 418.170 kb on + strand, within GFF1167at 418.171 kb on - strand, within GFF1167at 418.171 kb on - strand, within GFF1167at 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.221 kb on + strandat 418.239 kb on - strandat 418.241 kb on + strandat 418.316 kb on - strandat 418.331 kb on + strandat 418.332 kb on - strandat 418.332 kb on - strandat 418.332 kb on - strandat 418.332 kb on - strandat 418.417 kb on + strand, within GFF1168at 418.417 kb on + strand, within GFF1168at 418.451 kb on + strand, within GFF1168at 418.452 kb on - strand, within GFF1168at 418.457 kb on + strand, within GFF1168at 418.461 kb on - strand, within GFF1168at 418.466 kb on + strand, within GFF1168at 418.489 kb on + strandat 418.489 kb on + strandat 418.489 kb on + strandat 418.489 kb on + strandat 418.489 kb on + strandat 418.489 kb on + strandat 418.489 kb on + strandat 418.489 kb on + strandat 418.490 kb on - strandat 418.490 kb on - strandat 418.490 kb on - strandat 418.491 kb on + strandat 418.491 kb on + strandat 418.525 kb on + strandat 418.526 kb on - strandat 418.542 kb on + strandat 418.542 kb on + strandat 418.573 kb on + strandat 418.595 kb on + strandat 418.595 kb on + strandat 418.596 kb on - strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.597 kb on + strandat 418.598 kb on - strandat 418.598 kb on - strandat 418.598 kb on - strandat 418.598 kb on - strandat 418.601 kb on + strandat 418.601 kb on + strandat 418.601 kb on + strandat 418.736 kb on + strandat 418.736 kb on + strandat 418.750 kb on - strandat 418.869 kb on + strand, within GFF1169at 418.869 kb on + strand, within GFF1169at 418.869 kb on + strand, within GFF1169at 418.869 kb on + strand, within GFF1169at 418.870 kb on - strand, within GFF1169at 418.870 kb on - strand, within GFF1169at 418.870 kb on - strand, within GFF1169at 418.871 kb on + strand, within GFF1169at 418.897 kb on + strand, within GFF1169at 418.897 kb on + strand, within GFF1169at 418.897 kb on + strand, within GFF1169at 418.897 kb on + strand, within GFF1169at 418.897 kb on + strand, within GFF1169at 418.900 kb on - strand, within GFF1169at 418.941 kb on + strand, within GFF1169at 418.942 kb on - strand, within GFF1169at 419.126 kb on + strand, within GFF1169at 419.126 kb on + strand, within GFF1169at 419.194 kb on + strand, within GFF1169at 419.194 kb on + strand, within GFF1169at 419.214 kb on + strand, within GFF1169at 419.214 kb on + strand, within GFF1169at 419.250 kb on + strand, within GFF1169at 419.288 kb on + strand, within GFF1169at 419.313 kb on + strand, within GFF1169at 419.331 kb on + strand, within GFF1169at 419.426 kb on + strand, within GFF1169at 419.426 kb on + strand, within GFF1169

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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417,341 + GFF1167 0.17 -0.1
417,383 - GFF1167 0.20 -1.1
417,520 - GFF1167 0.32 -0.7
417,595 - GFF1167 0.39 -1.4
417,595 - GFF1167 0.39 +0.2
417,679 + GFF1167 0.46 -1.1
417,680 - GFF1167 0.46 +0.6
417,680 - GFF1167 0.46 +0.4
417,682 + GFF1167 0.46 +0.5
417,683 - GFF1167 0.46 +1.2
417,683 - GFF1167 0.46 +0.1
417,683 - GFF1167 0.46 -1.7
417,683 - GFF1167 0.46 -1.1
417,683 - GFF1167 0.46 -1.4
417,683 - GFF1167 0.46 -1.4
417,687 - GFF1167 0.47 +0.5
417,687 - GFF1167 0.47 -0.6
417,753 + GFF1167 0.52 -1.1
417,753 + GFF1167 0.52 -1.1
417,754 - GFF1167 0.52 -0.1
417,895 - GFF1167 0.65 -0.0
417,895 - GFF1167 0.65 +0.3
417,919 + GFF1167 0.67 -1.1
417,920 - GFF1167 0.67 +0.1
417,920 - GFF1167 0.67 -0.7
417,920 - GFF1167 0.67 -1.1
417,920 - GFF1167 0.67 -1.4
417,920 - GFF1167 0.67 +0.6
418,040 + GFF1167 0.77 -1.1
418,041 - GFF1167 0.77 +0.5
418,071 - GFF1167 0.80 -0.3
418,165 + GFF1167 0.88 +0.9
418,166 - GFF1167 0.88 -0.1
418,166 - GFF1167 0.88 -1.1
418,166 - GFF1167 0.88 -0.1
418,170 + GFF1167 0.89 -1.4
418,171 - GFF1167 0.89 -1.1
418,171 - GFF1167 0.89 +0.1
418,202 - -1.7
418,202 - -1.7
418,202 - -1.1
418,221 + -1.7
418,239 - -1.1
418,241 + -1.4
418,316 - -0.4
418,331 + +0.6
418,332 - -0.6
418,332 - -0.7
418,332 - -1.4
418,332 - -1.1
418,417 + GFF1168 0.53 -1.1
418,417 + GFF1168 0.53 -1.1
418,451 + GFF1168 0.76 -1.1
418,452 - GFF1168 0.77 -0.1
418,457 + GFF1168 0.80 -0.2
418,461 - GFF1168 0.83 -2.6
418,466 + GFF1168 0.86 +0.6
418,489 + -1.1
418,489 + -1.1
418,489 + -0.1
418,489 + -1.6
418,489 + -1.1
418,489 + +0.1
418,489 + -0.8
418,489 + +0.1
418,490 - +0.5
418,490 - -1.3
418,490 - -1.1
418,491 + -1.1
418,491 + +0.1
418,525 + -1.1
418,526 - -0.1
418,542 + -0.1
418,542 + +0.1
418,573 + -1.1
418,595 + -1.1
418,595 + +0.5
418,596 - -1.4
418,597 + -0.4
418,597 + -1.7
418,597 + -0.4
418,597 + -0.1
418,597 + -1.4
418,597 + -0.6
418,597 + -0.9
418,597 + -0.7
418,598 - -0.7
418,598 - +0.3
418,598 - -1.1
418,598 - -0.1
418,601 + -1.7
418,601 + -1.1
418,601 + -2.4
418,736 + +0.1
418,736 + -0.9
418,750 - +0.3
418,869 + GFF1169 0.14 -0.4
418,869 + GFF1169 0.14 -0.1
418,869 + GFF1169 0.14 -0.7
418,869 + GFF1169 0.14 -0.4
418,870 - GFF1169 0.14 -1.7
418,870 - GFF1169 0.14 -2.4
418,870 - GFF1169 0.14 -1.1
418,871 + GFF1169 0.14 -1.4
418,897 + GFF1169 0.16 -0.9
418,897 + GFF1169 0.16 -1.4
418,897 + GFF1169 0.16 -0.2
418,897 + GFF1169 0.16 -1.1
418,897 + GFF1169 0.16 +0.9
418,900 - GFF1169 0.16 -0.3
418,941 + GFF1169 0.18 -0.5
418,942 - GFF1169 0.18 -1.1
419,126 + GFF1169 0.28 -1.7
419,126 + GFF1169 0.28 +0.5
419,194 + GFF1169 0.32 +0.0
419,194 + GFF1169 0.32 -1.3
419,214 + GFF1169 0.33 -1.8
419,214 + GFF1169 0.33 -1.7
419,250 + GFF1169 0.35 -1.4
419,288 + GFF1169 0.37 -0.3
419,313 + GFF1169 0.38 -0.1
419,331 + GFF1169 0.39 -1.4
419,426 + GFF1169 0.44 +0.1
419,426 + GFF1169 0.44 -1.1

Or see this region's nucleotide sequence