Strain Fitness in Methylophilus sp. DMC18 around GFF1126

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1124 and GFF1125 are separated by 52 nucleotidesGFF1125 and GFF1126 are separated by 5 nucleotidesGFF1126 and GFF1127 are separated by 138 nucleotides GFF1124 - Sugar transporter SemiSWEET, at 377,565 to 377,831 GFF1124 GFF1125 - UTP--glucose-1-phosphate uridylyltransferase, at 377,884 to 378,753 GFF1125 GFF1126 - Hypoxanthine-guanine phosphoribosyltransferase, at 378,759 to 379,313 GFF1126 GFF1127 - hypothetical protein, at 379,452 to 380,903 GFF1127 Position (kb) 378 379 380Strain fitness (log2 ratio) -2 -1 0 1 2at 377.803 kb on + strand, within GFF1124at 377.803 kb on + strand, within GFF1124at 377.816 kb on + strandat 377.816 kb on + strandat 377.816 kb on + strandat 377.816 kb on + strandat 377.842 kb on + strandat 377.842 kb on + strandat 377.842 kb on + strandat 377.843 kb on - strandat 377.853 kb on + strandat 377.855 kb on + strandat 377.855 kb on + strandat 377.855 kb on + strandat 377.855 kb on + strandat 377.855 kb on + strandat 377.859 kb on + strandat 377.859 kb on + strandat 377.865 kb on + strandat 377.865 kb on + strandat 377.869 kb on + strandat 377.872 kb on + strandat 377.872 kb on + strandat 377.872 kb on + strandat 378.814 kb on + strandat 378.814 kb on + strandat 378.814 kb on + strandat 378.859 kb on + strand, within GFF1126at 378.933 kb on + strand, within GFF1126at 378.979 kb on + strand, within GFF1126at 378.984 kb on + strand, within GFF1126at 379.002 kb on + strand, within GFF1126at 379.246 kb on + strand, within GFF1126at 379.246 kb on + strand, within GFF1126at 379.246 kb on + strand, within GFF1126at 379.269 kb on + strandat 379.270 kb on - strandat 379.270 kb on - strandat 379.306 kb on + strandat 379.306 kb on + strandat 379.312 kb on - strandat 379.312 kb on - strandat 379.382 kb on + strandat 379.382 kb on + strandat 379.418 kb on + strandat 379.419 kb on - strandat 379.527 kb on - strandat 379.590 kb on - strandat 379.635 kb on + strand, within GFF1127at 379.661 kb on + strand, within GFF1127at 379.664 kb on + strand, within GFF1127at 379.665 kb on - strand, within GFF1127at 379.696 kb on + strand, within GFF1127at 379.697 kb on - strand, within GFF1127at 379.753 kb on + strand, within GFF1127at 379.924 kb on + strand, within GFF1127at 379.925 kb on - strand, within GFF1127at 379.955 kb on + strand, within GFF1127at 379.956 kb on - strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.959 kb on + strand, within GFF1127at 379.960 kb on - strand, within GFF1127at 379.960 kb on - strand, within GFF1127at 379.960 kb on - strand, within GFF1127at 379.960 kb on - strand, within GFF1127at 379.960 kb on - strand, within GFF1127at 379.975 kb on + strand, within GFF1127at 379.975 kb on + strand, within GFF1127at 380.054 kb on + strand, within GFF1127at 380.071 kb on - strand, within GFF1127at 380.071 kb on - strand, within GFF1127at 380.076 kb on - strand, within GFF1127at 380.076 kb on - strand, within GFF1127at 380.076 kb on - strand, within GFF1127at 380.096 kb on + strand, within GFF1127at 380.096 kb on + strand, within GFF1127at 380.097 kb on - strand, within GFF1127at 380.097 kb on - strand, within GFF1127at 380.179 kb on + strand, within GFF1127at 380.179 kb on + strand, within GFF1127at 380.179 kb on + strand, within GFF1127at 380.179 kb on + strand, within GFF1127at 380.194 kb on + strand, within GFF1127at 380.195 kb on - strand, within GFF1127at 380.195 kb on - strand, within GFF1127at 380.224 kb on + strand, within GFF1127at 380.225 kb on - strand, within GFF1127at 380.300 kb on + strand, within GFF1127at 380.300 kb on + strand, within GFF1127

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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377,803 + GFF1124 0.89 -1.8
377,803 + GFF1124 0.89 -1.4
377,816 + -1.9
377,816 + -1.0
377,816 + -2.4
377,816 + -1.5
377,842 + +0.2
377,842 + +0.4
377,842 + +1.7
377,843 - +0.1
377,853 + -0.2
377,855 + -0.4
377,855 + +0.5
377,855 + -2.4
377,855 + -0.2
377,855 + -0.8
377,859 + +0.5
377,859 + -0.5
377,865 + +0.1
377,865 + -0.3
377,869 + +0.6
377,872 + +0.7
377,872 + +0.4
377,872 + -0.6
378,814 + +0.5
378,814 + -1.4
378,814 + -0.5
378,859 + GFF1126 0.18 -0.4
378,933 + GFF1126 0.31 -0.9
378,979 + GFF1126 0.40 -1.4
378,984 + GFF1126 0.41 -2.4
379,002 + GFF1126 0.44 -0.9
379,246 + GFF1126 0.88 -0.7
379,246 + GFF1126 0.88 -1.1
379,246 + GFF1126 0.88 -0.1
379,269 + +0.2
379,270 - -1.9
379,270 - -1.1
379,306 + +0.9
379,306 + +0.3
379,312 - -0.6
379,312 - -1.4
379,382 + -0.4
379,382 + -0.9
379,418 + -0.8
379,419 - -0.6
379,527 - -0.3
379,590 - -0.8
379,635 + GFF1127 0.13 -1.3
379,661 + GFF1127 0.14 -0.8
379,664 + GFF1127 0.15 +0.2
379,665 - GFF1127 0.15 -1.4
379,696 + GFF1127 0.17 -0.5
379,697 - GFF1127 0.17 -0.8
379,753 + GFF1127 0.21 -0.7
379,924 + GFF1127 0.33 -1.4
379,925 - GFF1127 0.33 -0.6
379,955 + GFF1127 0.35 +1.2
379,956 - GFF1127 0.35 -0.4
379,959 + GFF1127 0.35 -0.1
379,959 + GFF1127 0.35 -0.2
379,959 + GFF1127 0.35 -0.7
379,959 + GFF1127 0.35 -0.5
379,959 + GFF1127 0.35 -1.3
379,959 + GFF1127 0.35 +0.9
379,959 + GFF1127 0.35 -0.1
379,959 + GFF1127 0.35 -0.8
379,960 - GFF1127 0.35 -0.1
379,960 - GFF1127 0.35 -1.8
379,960 - GFF1127 0.35 -1.1
379,960 - GFF1127 0.35 -0.1
379,960 - GFF1127 0.35 -0.1
379,975 + GFF1127 0.36 -1.9
379,975 + GFF1127 0.36 -0.9
380,054 + GFF1127 0.41 -1.3
380,071 - GFF1127 0.43 -1.7
380,071 - GFF1127 0.43 +1.1
380,076 - GFF1127 0.43 +0.5
380,076 - GFF1127 0.43 -0.1
380,076 - GFF1127 0.43 +2.2
380,096 + GFF1127 0.44 +0.9
380,096 + GFF1127 0.44 +0.1
380,097 - GFF1127 0.44 -0.5
380,097 - GFF1127 0.44 -0.4
380,179 + GFF1127 0.50 +1.9
380,179 + GFF1127 0.50 +0.2
380,179 + GFF1127 0.50 -1.3
380,179 + GFF1127 0.50 -0.9
380,194 + GFF1127 0.51 +0.5
380,195 - GFF1127 0.51 -1.1
380,195 - GFF1127 0.51 -1.1
380,224 + GFF1127 0.53 -0.6
380,225 - GFF1127 0.53 -2.3
380,300 + GFF1127 0.58 -1.1
380,300 + GFF1127 0.58 -1.1

Or see this region's nucleotide sequence