Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1057 and GFF1058 are separated by 249 nucleotides GFF1058 and GFF1059 overlap by 4 nucleotides
GFF1057 - Methionine aminopeptidase, at 295,735 to 296,529
GFF1057
GFF1058 - hypothetical protein, at 296,779 to 297,612
GFF1058
GFF1059 - Beta-barrel assembly-enhancing protease, at 297,609 to 299,471
GFF1059
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 296.586 kb on - strand at 296.590 kb on - strand at 296.603 kb on - strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.608 kb on - strand at 296.608 kb on - strand at 296.608 kb on - strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.616 kb on - strand at 296.616 kb on - strand at 296.616 kb on - strand at 296.636 kb on + strand at 296.636 kb on + strand at 296.672 kb on - strand at 296.672 kb on - strand at 296.672 kb on - strand at 296.684 kb on + strand at 296.704 kb on + strand at 296.704 kb on + strand at 296.709 kb on + strand at 296.710 kb on - strand at 296.745 kb on + strand at 296.748 kb on - strand at 296.764 kb on - strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.891 kb on + strand, within GFF1058 at 296.892 kb on - strand, within GFF1058 at 296.928 kb on + strand, within GFF1058 at 297.008 kb on + strand, within GFF1058 at 297.039 kb on + strand, within GFF1058 at 297.039 kb on + strand, within GFF1058 at 297.039 kb on + strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.273 kb on + strand, within GFF1058 at 297.318 kb on + strand, within GFF1058 at 297.319 kb on - strand, within GFF1058 at 297.319 kb on - strand, within GFF1058 at 297.378 kb on - strand, within GFF1058 at 297.465 kb on + strand, within GFF1058 at 297.466 kb on - strand, within GFF1058 at 297.466 kb on - strand, within GFF1058 at 297.466 kb on - strand, within GFF1058 at 297.539 kb on - strand at 297.539 kb on - strand at 297.546 kb on + strand at 297.546 kb on + strand at 297.547 kb on - strand at 297.547 kb on - strand at 297.588 kb on + strand at 297.589 kb on - strand at 297.589 kb on - strand at 297.589 kb on - strand at 297.610 kb on + strand at 297.611 kb on - strand at 297.684 kb on + strand at 297.685 kb on - strand at 297.749 kb on - strand at 297.774 kb on + strand at 297.775 kb on - strand at 297.804 kb on + strand, within GFF1059 at 297.805 kb on - strand, within GFF1059 at 297.825 kb on + strand, within GFF1059 at 297.825 kb on + strand, within GFF1059 at 297.864 kb on + strand, within GFF1059 at 297.865 kb on - strand, within GFF1059 at 297.865 kb on - strand, within GFF1059 at 297.962 kb on + strand, within GFF1059 at 297.963 kb on - strand, within GFF1059 at 297.963 kb on - strand, within GFF1059 at 297.963 kb on - strand, within GFF1059 at 298.014 kb on - strand, within GFF1059 at 298.014 kb on - strand, within GFF1059 at 298.063 kb on + strand, within GFF1059 at 298.063 kb on + strand, within GFF1059 at 298.063 kb on + strand, within GFF1059 at 298.064 kb on - strand, within GFF1059 at 298.064 kb on - strand, within GFF1059 at 298.064 kb on - strand, within GFF1059 at 298.125 kb on + strand, within GFF1059 at 298.125 kb on + strand, within GFF1059 at 298.126 kb on - strand, within GFF1059 at 298.168 kb on + strand, within GFF1059 at 298.169 kb on - strand, within GFF1059 at 298.169 kb on - strand, within GFF1059 at 298.185 kb on + strand, within GFF1059 at 298.190 kb on + strand, within GFF1059 at 298.190 kb on + strand, within GFF1059 at 298.206 kb on - strand, within GFF1059 at 298.239 kb on + strand, within GFF1059 at 298.239 kb on + strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.260 kb on - strand, within GFF1059 at 298.260 kb on - strand, within GFF1059 at 298.260 kb on - strand, within GFF1059 at 298.307 kb on - strand, within GFF1059 at 298.313 kb on + strand, within GFF1059 at 298.326 kb on + strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.358 kb on + strand, within GFF1059 at 298.358 kb on + strand, within GFF1059 at 298.359 kb on - strand, within GFF1059 at 298.359 kb on - strand, within GFF1059 at 298.379 kb on + strand, within GFF1059 at 298.380 kb on - strand, within GFF1059 at 298.380 kb on - strand, within GFF1059 at 298.397 kb on - strand, within GFF1059 at 298.473 kb on + strand, within GFF1059 at 298.483 kb on - strand, within GFF1059 at 298.483 kb on - strand, within GFF1059 at 298.528 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.585 kb on + strand, within GFF1059 at 298.585 kb on + strand, within GFF1059 at 298.585 kb on + strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 296,586 - -0.7 296,590 - -0.9 296,603 - -1.1 296,607 + -1.7 296,607 + -0.9 296,607 + -0.9 296,607 + -0.5 296,607 + +0.5 296,608 - +0.3 296,608 - -0.1 296,608 - -1.1 296,615 + -0.1 296,615 + -0.1 296,615 + -1.2 296,615 + -0.9 296,615 + -0.2 296,616 - -1.9 296,616 - -1.1 296,616 - +0.1 296,636 + -0.4 296,636 + -0.1 296,672 - -1.9 296,672 - -1.2 296,672 - -1.1 296,684 + -0.1 296,704 + -1.8 296,704 + -0.4 296,709 + -3.0 296,710 - -1.7 296,745 + -2.6 296,748 - +0.6 296,764 - -3.0 296,778 + -1.7 296,778 + -2.5 296,778 + -0.1 296,778 + -1.7 296,778 + -1.2 296,778 + -1.4 296,779 - -0.4 296,779 - -2.8 296,779 - -0.7 296,779 - -2.3 296,779 - -1.1 296,779 - -2.1 296,779 - -0.1 296,891 + GFF1058 0.13 -1.8 296,892 - GFF1058 0.14 -1.8 296,928 + GFF1058 0.18 +0.3 297,008 + GFF1058 0.27 -2.1 297,039 + GFF1058 0.31 -1.6 297,039 + GFF1058 0.31 -2.1 297,039 + GFF1058 0.31 -0.6 297,040 - GFF1058 0.31 -0.4 297,040 - GFF1058 0.31 -1.4 297,040 - GFF1058 0.31 -0.9 297,040 - GFF1058 0.31 -2.1 297,114 + GFF1058 0.40 -0.7 297,114 + GFF1058 0.40 -0.6 297,114 + GFF1058 0.40 -0.9 297,114 + GFF1058 0.40 -0.7 297,114 + GFF1058 0.40 -1.6 297,114 + GFF1058 0.40 -1.4 297,114 + GFF1058 0.40 -1.7 297,114 + GFF1058 0.40 -1.1 297,114 + GFF1058 0.40 -1.7 297,114 + GFF1058 0.40 -0.9 297,114 + GFF1058 0.40 -2.6 297,114 + GFF1058 0.40 -2.9 297,115 - GFF1058 0.40 -1.4 297,115 - GFF1058 0.40 -0.4 297,115 - GFF1058 0.40 -3.5 297,115 - GFF1058 0.40 -1.6 297,115 - GFF1058 0.40 -0.9 297,115 - GFF1058 0.40 -1.7 297,115 - GFF1058 0.40 -0.9 297,273 + GFF1058 0.59 -2.5 297,318 + GFF1058 0.65 -1.2 297,319 - GFF1058 0.65 -2.6 297,319 - GFF1058 0.65 -2.3 297,378 - GFF1058 0.72 -0.3 297,465 + GFF1058 0.82 -0.7 297,466 - GFF1058 0.82 -1.1 297,466 - GFF1058 0.82 -1.6 297,466 - GFF1058 0.82 -2.8 297,539 - -0.1 297,539 - -2.1 297,546 + -1.4 297,546 + -1.7 297,547 - -0.7 297,547 - -2.1 297,588 + -0.4 297,589 - -2.7 297,589 - -1.1 297,589 - -1.7 297,610 + +0.5 297,611 - -0.1 297,684 + +0.7 297,685 - +0.8 297,749 - +0.1 297,774 + -2.9 297,775 - -0.7 297,804 + GFF1059 0.10 -0.3 297,805 - GFF1059 0.11 +0.2 297,825 + GFF1059 0.12 -0.3 297,825 + GFF1059 0.12 -1.1 297,864 + GFF1059 0.14 -1.7 297,865 - GFF1059 0.14 -2.1 297,865 - GFF1059 0.14 +0.9 297,962 + GFF1059 0.19 -0.7 297,963 - GFF1059 0.19 -0.4 297,963 - GFF1059 0.19 +1.2 297,963 - GFF1059 0.19 -0.1 298,014 - GFF1059 0.22 -0.1 298,014 - GFF1059 0.22 -0.7 298,063 + GFF1059 0.24 -0.3 298,063 + GFF1059 0.24 -2.3 298,063 + GFF1059 0.24 +0.5 298,064 - GFF1059 0.24 +0.6 298,064 - GFF1059 0.24 -1.0 298,064 - GFF1059 0.24 -0.4 298,125 + GFF1059 0.28 -1.9 298,125 + GFF1059 0.28 -0.2 298,126 - GFF1059 0.28 +0.6 298,168 + GFF1059 0.30 -0.7 298,169 - GFF1059 0.30 +1.2 298,169 - GFF1059 0.30 +0.8 298,185 + GFF1059 0.31 -0.9 298,190 + GFF1059 0.31 -0.3 298,190 + GFF1059 0.31 +0.5 298,206 - GFF1059 0.32 -1.0 298,239 + GFF1059 0.34 -1.1 298,239 + GFF1059 0.34 +0.5 298,240 - GFF1059 0.34 +0.5 298,240 - GFF1059 0.34 +0.1 298,240 - GFF1059 0.34 -1.0 298,240 - GFF1059 0.34 -0.4 298,260 - GFF1059 0.35 -1.5 298,260 - GFF1059 0.35 +0.1 298,260 - GFF1059 0.35 +0.1 298,307 - GFF1059 0.37 -2.1 298,313 + GFF1059 0.38 -1.8 298,326 + GFF1059 0.38 -1.7 298,327 - GFF1059 0.39 -0.5 298,327 - GFF1059 0.39 -0.5 298,327 - GFF1059 0.39 +0.2 298,327 - GFF1059 0.39 -0.6 298,358 + GFF1059 0.40 +0.5 298,358 + GFF1059 0.40 -0.9 298,359 - GFF1059 0.40 -0.0 298,359 - GFF1059 0.40 -1.6 298,379 + GFF1059 0.41 -0.7 298,380 - GFF1059 0.41 -1.3 298,380 - GFF1059 0.41 -1.4 298,397 - GFF1059 0.42 -0.7 298,473 + GFF1059 0.46 -0.1 298,483 - GFF1059 0.47 -0.1 298,483 - GFF1059 0.47 -0.5 298,528 + GFF1059 0.49 +0.5 298,574 + GFF1059 0.52 -1.1 298,574 + GFF1059 0.52 +0.3 298,574 + GFF1059 0.52 -0.6 298,574 + GFF1059 0.52 -1.1 298,575 - GFF1059 0.52 +0.0 298,575 - GFF1059 0.52 -0.8 298,575 - GFF1059 0.52 -1.4 298,575 - GFF1059 0.52 +0.9 298,583 + GFF1059 0.52 -0.7 298,583 + GFF1059 0.52 -1.1 298,583 + GFF1059 0.52 -1.3 298,583 + GFF1059 0.52 -1.9 298,583 + GFF1059 0.52 -0.1 298,583 + GFF1059 0.52 -1.7 298,583 + GFF1059 0.52 -1.7 298,583 + GFF1059 0.52 +0.2 298,583 + GFF1059 0.52 -0.1 298,584 - GFF1059 0.52 -1.1 298,584 - GFF1059 0.52 +0.2 298,584 - GFF1059 0.52 -0.4 298,584 - GFF1059 0.52 -0.3 298,584 - GFF1059 0.52 -0.0 298,584 - GFF1059 0.52 -0.7 298,584 - GFF1059 0.52 +0.2 298,584 - GFF1059 0.52 -0.4 298,584 - GFF1059 0.52 -0.5 298,584 - GFF1059 0.52 -0.7 298,584 - GFF1059 0.52 -0.7 298,585 + GFF1059 0.52 -0.4 298,585 + GFF1059 0.52 -0.9 298,585 + GFF1059 0.52 -0.2 298,586 - GFF1059 0.52 -0.4 298,586 - GFF1059 0.52 -0.9 298,586 - GFF1059 0.52 -0.3 298,586 - GFF1059 0.52 -0.9 298,586 - GFF1059 0.52 +0.4
Or see this region's nucleotide sequence