Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1050 and GFF1051 overlap by 4 nucleotides GFF1051 and GFF1052 are separated by 67 nucleotides GFF1052 and GFF1053 are separated by 21 nucleotides GFF1053 and GFF1054 are separated by 183 nucleotides
GFF1050 - 15-cis-phytoene synthase, at 289,203 to 290,045
GFF1050
GFF1051 - Hydroxysqualene synthase, at 290,042 to 290,911
GFF1051
GFF1052 - S-methyl-5'-thioinosine phosphorylase, at 290,979 to 291,734
GFF1052
GFF1053 - Peptide deformylase, at 291,756 to 292,289
GFF1053
GFF1054 - hypothetical protein, at 292,473 to 292,748
GFF1054
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 290.030 kb on - strand at 290.050 kb on + strand at 290.085 kb on + strand at 290.085 kb on + strand at 290.086 kb on - strand at 290.086 kb on - strand at 290.086 kb on - strand at 290.113 kb on - strand at 290.117 kb on - strand at 290.140 kb on + strand, within GFF1051 at 290.141 kb on - strand, within GFF1051 at 290.149 kb on + strand, within GFF1051 at 290.149 kb on + strand, within GFF1051 at 290.150 kb on - strand, within GFF1051 at 290.353 kb on - strand, within GFF1051 at 290.387 kb on + strand, within GFF1051 at 290.432 kb on + strand, within GFF1051 at 290.433 kb on - strand, within GFF1051 at 290.433 kb on - strand, within GFF1051 at 290.475 kb on + strand, within GFF1051 at 290.475 kb on + strand, within GFF1051 at 290.476 kb on - strand, within GFF1051 at 290.489 kb on + strand, within GFF1051 at 290.524 kb on - strand, within GFF1051 at 290.532 kb on - strand, within GFF1051 at 290.540 kb on - strand, within GFF1051 at 290.545 kb on + strand, within GFF1051 at 290.546 kb on - strand, within GFF1051 at 290.546 kb on - strand, within GFF1051 at 290.546 kb on - strand, within GFF1051 at 290.598 kb on - strand, within GFF1051 at 290.669 kb on + strand, within GFF1051 at 290.669 kb on + strand, within GFF1051 at 290.669 kb on + strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.690 kb on + strand, within GFF1051 at 290.703 kb on + strand, within GFF1051 at 290.703 kb on + strand, within GFF1051 at 290.704 kb on - strand, within GFF1051 at 290.704 kb on - strand, within GFF1051 at 290.729 kb on + strand, within GFF1051 at 290.807 kb on + strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.875 kb on + strand at 290.875 kb on + strand at 290.875 kb on + strand at 290.876 kb on - strand at 290.876 kb on - strand at 290.876 kb on - strand at 290.916 kb on + strand at 290.920 kb on + strand at 290.920 kb on + strand at 290.920 kb on + strand at 290.921 kb on - strand at 290.938 kb on + strand at 290.938 kb on + strand at 290.939 kb on - strand at 290.944 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.990 kb on + strand at 290.991 kb on - strand at 291.036 kb on - strand at 291.060 kb on + strand, within GFF1052 at 291.082 kb on + strand, within GFF1052 at 291.082 kb on + strand, within GFF1052 at 291.143 kb on + strand, within GFF1052 at 291.143 kb on + strand, within GFF1052 at 291.248 kb on + strand, within GFF1052 at 291.286 kb on + strand, within GFF1052 at 291.286 kb on + strand, within GFF1052 at 291.286 kb on + strand, within GFF1052 at 291.294 kb on + strand, within GFF1052 at 291.295 kb on - strand, within GFF1052 at 291.295 kb on - strand, within GFF1052 at 291.300 kb on + strand, within GFF1052 at 291.300 kb on + strand, within GFF1052 at 291.301 kb on - strand, within GFF1052 at 291.301 kb on - strand, within GFF1052 at 291.301 kb on - strand, within GFF1052 at 291.301 kb on - strand, within GFF1052 at 291.311 kb on + strand, within GFF1052 at 291.318 kb on + strand, within GFF1052 at 291.319 kb on - strand, within GFF1052 at 291.331 kb on + strand, within GFF1052 at 291.352 kb on + strand, within GFF1052 at 291.352 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.444 kb on + strand, within GFF1052 at 291.445 kb on - strand, within GFF1052 at 291.445 kb on - strand, within GFF1052 at 291.445 kb on - strand, within GFF1052 at 291.487 kb on + strand, within GFF1052 at 291.487 kb on + strand, within GFF1052 at 291.487 kb on + strand, within GFF1052 at 291.488 kb on - strand, within GFF1052 at 291.573 kb on + strand, within GFF1052 at 291.574 kb on - strand, within GFF1052 at 291.620 kb on + strand, within GFF1052 at 291.623 kb on + strand, within GFF1052 at 291.624 kb on - strand, within GFF1052 at 291.632 kb on + strand, within GFF1052 at 291.678 kb on - strand at 291.702 kb on + strand at 291.703 kb on - strand at 291.714 kb on - strand at 291.733 kb on - strand at 291.791 kb on + strand at 291.791 kb on + strand at 291.792 kb on - strand at 291.793 kb on + strand at 291.793 kb on + strand at 291.860 kb on + strand, within GFF1053 at 291.861 kb on - strand, within GFF1053 at 291.990 kb on - strand, within GFF1053 at 292.130 kb on + strand, within GFF1053 at 292.195 kb on + strand, within GFF1053 at 292.195 kb on + strand, within GFF1053 at 292.195 kb on + strand, within GFF1053 at 292.196 kb on - strand, within GFF1053 at 292.247 kb on + strand at 292.247 kb on + strand at 292.248 kb on - strand at 292.256 kb on - strand at 292.256 kb on - strand at 292.271 kb on - strand at 292.436 kb on + strand at 292.436 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.457 kb on - strand at 292.457 kb on - strand at 292.457 kb on - strand at 292.602 kb on + strand, within GFF1054 at 292.602 kb on + strand, within GFF1054 at 292.602 kb on + strand, within GFF1054 at 292.652 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 290,030 - +0.1 290,050 + -0.4 290,085 + +0.7 290,085 + -0.1 290,086 - +1.2 290,086 - +0.6 290,086 - -0.1 290,113 - +0.6 290,117 - -0.3 290,140 + GFF1051 0.11 -0.1 290,141 - GFF1051 0.11 +0.1 290,149 + GFF1051 0.12 -1.1 290,149 + GFF1051 0.12 -0.1 290,150 - GFF1051 0.12 -0.5 290,353 - GFF1051 0.36 -0.5 290,387 + GFF1051 0.40 +0.1 290,432 + GFF1051 0.45 -0.1 290,433 - GFF1051 0.45 -0.1 290,433 - GFF1051 0.45 -0.1 290,475 + GFF1051 0.50 +0.3 290,475 + GFF1051 0.50 -1.7 290,476 - GFF1051 0.50 +0.9 290,489 + GFF1051 0.51 +1.2 290,524 - GFF1051 0.55 +0.4 290,532 - GFF1051 0.56 -0.2 290,540 - GFF1051 0.57 -0.5 290,545 + GFF1051 0.58 -0.2 290,546 - GFF1051 0.58 -0.4 290,546 - GFF1051 0.58 +0.6 290,546 - GFF1051 0.58 -0.1 290,598 - GFF1051 0.64 +0.8 290,669 + GFF1051 0.72 +1.1 290,669 + GFF1051 0.72 -0.4 290,669 + GFF1051 0.72 +0.6 290,670 - GFF1051 0.72 -0.3 290,670 - GFF1051 0.72 +0.8 290,670 - GFF1051 0.72 +0.2 290,670 - GFF1051 0.72 -0.1 290,670 - GFF1051 0.72 +0.0 290,670 - GFF1051 0.72 +1.0 290,670 - GFF1051 0.72 +0.5 290,670 - GFF1051 0.72 -0.1 290,670 - GFF1051 0.72 +0.3 290,670 - GFF1051 0.72 +0.1 290,670 - GFF1051 0.72 -0.1 290,670 - GFF1051 0.72 -0.4 290,670 - GFF1051 0.72 +0.1 290,671 + GFF1051 0.72 +0.6 290,671 + GFF1051 0.72 +0.1 290,671 + GFF1051 0.72 -0.4 290,671 + GFF1051 0.72 -1.2 290,673 + GFF1051 0.73 -0.1 290,673 + GFF1051 0.73 -0.1 290,673 + GFF1051 0.73 +0.1 290,673 + GFF1051 0.73 +0.6 290,674 - GFF1051 0.73 +0.9 290,674 - GFF1051 0.73 +0.1 290,674 - GFF1051 0.73 +0.6 290,674 - GFF1051 0.73 +0.2 290,674 - GFF1051 0.73 +0.7 290,674 - GFF1051 0.73 +0.3 290,690 + GFF1051 0.74 +0.7 290,703 + GFF1051 0.76 +1.2 290,703 + GFF1051 0.76 +0.9 290,704 - GFF1051 0.76 +0.6 290,704 - GFF1051 0.76 +0.1 290,729 + GFF1051 0.79 -0.5 290,807 + GFF1051 0.88 -0.7 290,808 - GFF1051 0.88 +0.1 290,808 - GFF1051 0.88 +1.5 290,808 - GFF1051 0.88 -0.2 290,808 - GFF1051 0.88 +0.1 290,875 + +1.2 290,875 + -0.4 290,875 + +0.3 290,876 - +0.2 290,876 - +0.0 290,876 - +1.4 290,916 + +0.3 290,920 + +0.2 290,920 + -0.8 290,920 + -1.0 290,921 - +0.0 290,938 + -0.7 290,938 + -1.6 290,939 - -1.1 290,944 + -0.1 290,978 + -2.3 290,978 + -1.4 290,978 + -2.4 290,978 + -1.1 290,978 + +0.5 290,978 + -1.6 290,978 + -1.6 290,978 + -0.1 290,978 + -1.4 290,978 + -0.7 290,978 + -1.1 290,978 + -1.4 290,978 + -1.7 290,979 - -0.5 290,979 - -1.9 290,979 - -1.9 290,979 - -1.8 290,979 - -1.1 290,979 - -1.7 290,979 - -1.1 290,979 - -1.1 290,979 - -1.4 290,990 + -0.9 290,991 - -0.3 291,036 - -0.9 291,060 + GFF1052 0.11 -0.1 291,082 + GFF1052 0.14 -1.8 291,082 + GFF1052 0.14 -1.0 291,143 + GFF1052 0.22 +0.1 291,143 + GFF1052 0.22 -0.8 291,248 + GFF1052 0.36 -0.1 291,286 + GFF1052 0.41 -1.1 291,286 + GFF1052 0.41 -0.4 291,286 + GFF1052 0.41 -3.4 291,294 + GFF1052 0.42 -1.7 291,295 - GFF1052 0.42 -1.1 291,295 - GFF1052 0.42 -1.7 291,300 + GFF1052 0.42 +0.9 291,300 + GFF1052 0.42 -0.1 291,301 - GFF1052 0.43 -1.1 291,301 - GFF1052 0.43 -1.1 291,301 - GFF1052 0.43 -1.4 291,301 - GFF1052 0.43 -0.1 291,311 + GFF1052 0.44 -1.4 291,318 + GFF1052 0.45 -1.0 291,319 - GFF1052 0.45 -1.7 291,331 + GFF1052 0.47 +0.1 291,352 + GFF1052 0.49 -1.1 291,352 + GFF1052 0.49 -0.9 291,444 + GFF1052 0.62 -0.6 291,444 + GFF1052 0.62 -2.3 291,444 + GFF1052 0.62 -2.4 291,444 + GFF1052 0.62 -0.1 291,444 + GFF1052 0.62 +0.2 291,444 + GFF1052 0.62 -1.1 291,444 + GFF1052 0.62 -1.1 291,444 + GFF1052 0.62 -0.9 291,445 - GFF1052 0.62 -1.1 291,445 - GFF1052 0.62 -1.7 291,445 - GFF1052 0.62 -3.2 291,487 + GFF1052 0.67 -0.2 291,487 + GFF1052 0.67 -0.9 291,487 + GFF1052 0.67 -1.1 291,488 - GFF1052 0.67 -1.4 291,573 + GFF1052 0.79 -2.3 291,574 - GFF1052 0.79 -2.3 291,620 + GFF1052 0.85 -2.0 291,623 + GFF1052 0.85 -0.9 291,624 - GFF1052 0.85 -2.9 291,632 + GFF1052 0.86 -2.4 291,678 - -1.4 291,702 + -2.1 291,703 - -1.1 291,714 - -1.1 291,733 - -1.6 291,791 + -0.5 291,791 + +0.5 291,792 - +0.2 291,793 + -0.9 291,793 + -0.2 291,860 + GFF1053 0.19 -0.9 291,861 - GFF1053 0.20 -0.1 291,990 - GFF1053 0.44 -0.9 292,130 + GFF1053 0.70 -1.4 292,195 + GFF1053 0.82 -0.7 292,195 + GFF1053 0.82 -0.4 292,195 + GFF1053 0.82 -0.3 292,196 - GFF1053 0.82 -0.1 292,247 + -1.9 292,247 + -0.1 292,248 - -1.9 292,256 - -1.1 292,256 - -1.7 292,271 - -1.9 292,436 + -0.3 292,436 + -0.4 292,456 + -0.1 292,456 + +0.1 292,456 + -0.1 292,456 + +0.3 292,456 + +0.0 292,456 + +0.1 292,456 + -1.1 292,456 + +0.0 292,457 - -1.0 292,457 - -1.1 292,457 - -0.4 292,602 + GFF1054 0.47 -0.1 292,602 + GFF1054 0.47 -0.3 292,602 + GFF1054 0.47 +0.5 292,652 + GFF1054 0.65 -0.2 292,671 + GFF1054 0.72 +0.9 292,671 + GFF1054 0.72 +0.4 292,671 + GFF1054 0.72 -0.9 292,671 + GFF1054 0.72 -1.0 292,671 + GFF1054 0.72 -0.9 292,671 + GFF1054 0.72 -0.1 292,671 + GFF1054 0.72 -0.4 292,675 + GFF1054 0.73 -1.7 292,675 + GFF1054 0.73 -0.5 292,675 + GFF1054 0.73 -0.4 292,675 + GFF1054 0.73 -1.3 292,675 + GFF1054 0.73 +0.4 292,675 + GFF1054 0.73 -0.6 292,734 + -1.4
Or see this region's nucleotide sequence