Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1049 and GFF1050 overlap by 4 nucleotides GFF1050 and GFF1051 overlap by 4 nucleotides GFF1051 and GFF1052 are separated by 67 nucleotides
GFF1049 - Hydroxysqualene dehydroxylase, at 287,854 to 289,206
GFF1049
GFF1050 - 15-cis-phytoene synthase, at 289,203 to 290,045
GFF1050
GFF1051 - Hydroxysqualene synthase, at 290,042 to 290,911
GFF1051
GFF1052 - S-methyl-5'-thioinosine phosphorylase, at 290,979 to 291,734
GFF1052
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 288.236 kb on - strand, within GFF1049 at 288.236 kb on - strand, within GFF1049 at 288.236 kb on - strand, within GFF1049 at 288.236 kb on - strand, within GFF1049 at 288.284 kb on + strand, within GFF1049 at 288.284 kb on + strand, within GFF1049 at 288.284 kb on + strand, within GFF1049 at 288.285 kb on - strand, within GFF1049 at 288.285 kb on - strand, within GFF1049 at 288.285 kb on - strand, within GFF1049 at 288.285 kb on - strand, within GFF1049 at 288.324 kb on + strand, within GFF1049 at 288.324 kb on + strand, within GFF1049 at 288.324 kb on + strand, within GFF1049 at 288.324 kb on + strand, within GFF1049 at 288.325 kb on - strand, within GFF1049 at 288.325 kb on - strand, within GFF1049 at 288.481 kb on + strand, within GFF1049 at 288.481 kb on + strand, within GFF1049 at 288.482 kb on - strand, within GFF1049 at 288.482 kb on - strand, within GFF1049 at 288.482 kb on - strand, within GFF1049 at 288.482 kb on - strand, within GFF1049 at 288.482 kb on - strand, within GFF1049 at 288.482 kb on - strand, within GFF1049 at 288.505 kb on - strand, within GFF1049 at 288.536 kb on - strand, within GFF1049 at 288.580 kb on + strand, within GFF1049 at 288.580 kb on + strand, within GFF1049 at 288.580 kb on + strand, within GFF1049 at 288.581 kb on - strand, within GFF1049 at 288.587 kb on - strand, within GFF1049 at 288.592 kb on + strand, within GFF1049 at 288.592 kb on + strand, within GFF1049 at 288.592 kb on + strand, within GFF1049 at 288.593 kb on - strand, within GFF1049 at 288.640 kb on + strand, within GFF1049 at 288.656 kb on + strand, within GFF1049 at 288.656 kb on + strand, within GFF1049 at 288.694 kb on + strand, within GFF1049 at 288.727 kb on - strand, within GFF1049 at 288.727 kb on - strand, within GFF1049 at 288.774 kb on + strand, within GFF1049 at 288.775 kb on - strand, within GFF1049 at 288.861 kb on + strand, within GFF1049 at 288.862 kb on - strand, within GFF1049 at 288.962 kb on + strand, within GFF1049 at 288.963 kb on - strand, within GFF1049 at 289.063 kb on + strand, within GFF1049 at 289.063 kb on + strand, within GFF1049 at 289.063 kb on + strand, within GFF1049 at 289.064 kb on - strand, within GFF1049 at 289.085 kb on - strand at 289.099 kb on - strand at 289.182 kb on + strand at 289.183 kb on - strand at 289.192 kb on + strand at 289.275 kb on - strand at 289.281 kb on - strand at 289.281 kb on - strand at 289.354 kb on - strand, within GFF1050 at 289.354 kb on - strand, within GFF1050 at 289.522 kb on + strand, within GFF1050 at 289.522 kb on + strand, within GFF1050 at 289.523 kb on - strand, within GFF1050 at 289.604 kb on - strand, within GFF1050 at 289.626 kb on - strand, within GFF1050 at 289.668 kb on + strand, within GFF1050 at 289.669 kb on - strand, within GFF1050 at 289.669 kb on - strand, within GFF1050 at 289.682 kb on - strand, within GFF1050 at 289.718 kb on - strand, within GFF1050 at 289.718 kb on - strand, within GFF1050 at 289.777 kb on + strand, within GFF1050 at 290.030 kb on - strand at 290.050 kb on + strand at 290.085 kb on + strand at 290.085 kb on + strand at 290.086 kb on - strand at 290.086 kb on - strand at 290.086 kb on - strand at 290.113 kb on - strand at 290.117 kb on - strand at 290.140 kb on + strand, within GFF1051 at 290.141 kb on - strand, within GFF1051 at 290.149 kb on + strand, within GFF1051 at 290.149 kb on + strand, within GFF1051 at 290.150 kb on - strand, within GFF1051 at 290.353 kb on - strand, within GFF1051 at 290.387 kb on + strand, within GFF1051 at 290.432 kb on + strand, within GFF1051 at 290.433 kb on - strand, within GFF1051 at 290.433 kb on - strand, within GFF1051 at 290.475 kb on + strand, within GFF1051 at 290.475 kb on + strand, within GFF1051 at 290.476 kb on - strand, within GFF1051 at 290.489 kb on + strand, within GFF1051 at 290.524 kb on - strand, within GFF1051 at 290.532 kb on - strand, within GFF1051 at 290.540 kb on - strand, within GFF1051 at 290.545 kb on + strand, within GFF1051 at 290.546 kb on - strand, within GFF1051 at 290.546 kb on - strand, within GFF1051 at 290.546 kb on - strand, within GFF1051 at 290.598 kb on - strand, within GFF1051 at 290.669 kb on + strand, within GFF1051 at 290.669 kb on + strand, within GFF1051 at 290.669 kb on + strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.670 kb on - strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.671 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.673 kb on + strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.674 kb on - strand, within GFF1051 at 290.690 kb on + strand, within GFF1051 at 290.703 kb on + strand, within GFF1051 at 290.703 kb on + strand, within GFF1051 at 290.704 kb on - strand, within GFF1051 at 290.704 kb on - strand, within GFF1051 at 290.729 kb on + strand, within GFF1051 at 290.807 kb on + strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.808 kb on - strand, within GFF1051 at 290.875 kb on + strand at 290.875 kb on + strand at 290.875 kb on + strand at 290.876 kb on - strand at 290.876 kb on - strand at 290.876 kb on - strand at 290.916 kb on + strand at 290.920 kb on + strand at 290.920 kb on + strand at 290.920 kb on + strand at 290.921 kb on - strand at 290.938 kb on + strand at 290.938 kb on + strand at 290.939 kb on - strand at 290.944 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.978 kb on + strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.979 kb on - strand at 290.990 kb on + strand at 290.991 kb on - strand at 291.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 288,236 - GFF1049 0.28 -0.1 288,236 - GFF1049 0.28 -1.4 288,236 - GFF1049 0.28 -0.3 288,236 - GFF1049 0.28 -0.9 288,284 + GFF1049 0.32 +0.1 288,284 + GFF1049 0.32 -0.1 288,284 + GFF1049 0.32 -1.4 288,285 - GFF1049 0.32 -2.3 288,285 - GFF1049 0.32 +0.2 288,285 - GFF1049 0.32 -0.1 288,285 - GFF1049 0.32 -1.4 288,324 + GFF1049 0.35 -0.6 288,324 + GFF1049 0.35 -1.1 288,324 + GFF1049 0.35 -0.1 288,324 + GFF1049 0.35 -0.1 288,325 - GFF1049 0.35 -3.0 288,325 - GFF1049 0.35 -1.1 288,481 + GFF1049 0.46 -1.3 288,481 + GFF1049 0.46 -0.7 288,482 - GFF1049 0.46 +0.3 288,482 - GFF1049 0.46 -0.7 288,482 - GFF1049 0.46 -1.3 288,482 - GFF1049 0.46 -0.5 288,482 - GFF1049 0.46 -1.1 288,482 - GFF1049 0.46 -1.4 288,505 - GFF1049 0.48 -1.4 288,536 - GFF1049 0.50 -0.6 288,580 + GFF1049 0.54 -3.5 288,580 + GFF1049 0.54 -0.1 288,580 + GFF1049 0.54 -2.3 288,581 - GFF1049 0.54 -0.1 288,587 - GFF1049 0.54 -2.4 288,592 + GFF1049 0.55 +0.2 288,592 + GFF1049 0.55 -1.1 288,592 + GFF1049 0.55 -0.4 288,593 - GFF1049 0.55 -2.1 288,640 + GFF1049 0.58 -0.7 288,656 + GFF1049 0.59 -1.2 288,656 + GFF1049 0.59 +0.1 288,694 + GFF1049 0.62 -0.1 288,727 - GFF1049 0.65 +0.1 288,727 - GFF1049 0.65 +0.2 288,774 + GFF1049 0.68 -0.4 288,775 - GFF1049 0.68 +0.6 288,861 + GFF1049 0.74 +0.5 288,862 - GFF1049 0.75 -1.7 288,962 + GFF1049 0.82 -1.1 288,963 - GFF1049 0.82 -1.4 289,063 + GFF1049 0.89 -0.7 289,063 + GFF1049 0.89 -1.0 289,063 + GFF1049 0.89 -0.1 289,064 - GFF1049 0.89 -2.3 289,085 - -1.7 289,099 - +0.2 289,182 + -0.4 289,183 - -0.7 289,192 + -0.4 289,275 - -0.9 289,281 - -1.1 289,281 - -0.3 289,354 - GFF1050 0.18 -0.1 289,354 - GFF1050 0.18 -0.5 289,522 + GFF1050 0.38 +0.5 289,522 + GFF1050 0.38 -1.1 289,523 - GFF1050 0.38 +0.5 289,604 - GFF1050 0.48 -1.1 289,626 - GFF1050 0.50 -1.4 289,668 + GFF1050 0.55 -1.4 289,669 - GFF1050 0.55 -1.7 289,669 - GFF1050 0.55 -1.1 289,682 - GFF1050 0.57 +0.1 289,718 - GFF1050 0.61 -1.7 289,718 - GFF1050 0.61 -1.7 289,777 + GFF1050 0.68 -1.1 290,030 - +0.1 290,050 + -0.4 290,085 + +0.7 290,085 + -0.1 290,086 - +1.2 290,086 - +0.6 290,086 - -0.1 290,113 - +0.6 290,117 - -0.3 290,140 + GFF1051 0.11 -0.1 290,141 - GFF1051 0.11 +0.1 290,149 + GFF1051 0.12 -1.1 290,149 + GFF1051 0.12 -0.1 290,150 - GFF1051 0.12 -0.5 290,353 - GFF1051 0.36 -0.5 290,387 + GFF1051 0.40 +0.1 290,432 + GFF1051 0.45 -0.1 290,433 - GFF1051 0.45 -0.1 290,433 - GFF1051 0.45 -0.1 290,475 + GFF1051 0.50 +0.3 290,475 + GFF1051 0.50 -1.7 290,476 - GFF1051 0.50 +0.9 290,489 + GFF1051 0.51 +1.2 290,524 - GFF1051 0.55 +0.4 290,532 - GFF1051 0.56 -0.2 290,540 - GFF1051 0.57 -0.5 290,545 + GFF1051 0.58 -0.2 290,546 - GFF1051 0.58 -0.4 290,546 - GFF1051 0.58 +0.6 290,546 - GFF1051 0.58 -0.1 290,598 - GFF1051 0.64 +0.8 290,669 + GFF1051 0.72 +1.1 290,669 + GFF1051 0.72 -0.4 290,669 + GFF1051 0.72 +0.6 290,670 - GFF1051 0.72 -0.3 290,670 - GFF1051 0.72 +0.8 290,670 - GFF1051 0.72 +0.2 290,670 - GFF1051 0.72 -0.1 290,670 - GFF1051 0.72 +0.0 290,670 - GFF1051 0.72 +1.0 290,670 - GFF1051 0.72 +0.5 290,670 - GFF1051 0.72 -0.1 290,670 - GFF1051 0.72 +0.3 290,670 - GFF1051 0.72 +0.1 290,670 - GFF1051 0.72 -0.1 290,670 - GFF1051 0.72 -0.4 290,670 - GFF1051 0.72 +0.1 290,671 + GFF1051 0.72 +0.6 290,671 + GFF1051 0.72 +0.1 290,671 + GFF1051 0.72 -0.4 290,671 + GFF1051 0.72 -1.2 290,673 + GFF1051 0.73 -0.1 290,673 + GFF1051 0.73 -0.1 290,673 + GFF1051 0.73 +0.1 290,673 + GFF1051 0.73 +0.6 290,674 - GFF1051 0.73 +0.9 290,674 - GFF1051 0.73 +0.1 290,674 - GFF1051 0.73 +0.6 290,674 - GFF1051 0.73 +0.2 290,674 - GFF1051 0.73 +0.7 290,674 - GFF1051 0.73 +0.3 290,690 + GFF1051 0.74 +0.7 290,703 + GFF1051 0.76 +1.2 290,703 + GFF1051 0.76 +0.9 290,704 - GFF1051 0.76 +0.6 290,704 - GFF1051 0.76 +0.1 290,729 + GFF1051 0.79 -0.5 290,807 + GFF1051 0.88 -0.7 290,808 - GFF1051 0.88 +0.1 290,808 - GFF1051 0.88 +1.5 290,808 - GFF1051 0.88 -0.2 290,808 - GFF1051 0.88 +0.1 290,875 + +1.2 290,875 + -0.4 290,875 + +0.3 290,876 - +0.2 290,876 - +0.0 290,876 - +1.4 290,916 + +0.3 290,920 + +0.2 290,920 + -0.8 290,920 + -1.0 290,921 - +0.0 290,938 + -0.7 290,938 + -1.6 290,939 - -1.1 290,944 + -0.1 290,978 + -2.3 290,978 + -1.4 290,978 + -2.4 290,978 + -1.1 290,978 + +0.5 290,978 + -1.6 290,978 + -1.6 290,978 + -0.1 290,978 + -1.4 290,978 + -0.7 290,978 + -1.1 290,978 + -1.4 290,978 + -1.7 290,979 - -0.5 290,979 - -1.9 290,979 - -1.9 290,979 - -1.8 290,979 - -1.1 290,979 - -1.7 290,979 - -1.1 290,979 - -1.1 290,979 - -1.4 290,990 + -0.9 290,991 - -0.3 291,036 - -0.9
Or see this region's nucleotide sequence