Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1033 and GFF1034 overlap by 4 nucleotides GFF1034 and GFF1035 are separated by 1 nucleotides GFF1035 and GFF1036 are separated by 0 nucleotides GFF1036 and GFF1037 are separated by 3 nucleotides GFF1037 and GFF1038 are separated by 1 nucleotides
GFF1033 - hypothetical protein, at 275,329 to 276,681
GFF1033
GFF1034 - Molybdopterin synthase sulfur carrier subunit, at 276,678 to 276,935
GFF1034
GFF1035 - hypothetical protein, at 276,937 to 277,410
GFF1035
GFF1036 - Lon protease, at 277,411 to 279,576
GFF1036
GFF1037 - Heat shock protein 15, at 279,580 to 280,005
GFF1037
GFF1038 - hypothetical protein, at 280,007 to 280,786
GFF1038
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 276.441 kb on + strand, within GFF1033 at 276.442 kb on - strand, within GFF1033 at 276.442 kb on - strand, within GFF1033 at 276.442 kb on - strand, within GFF1033 at 276.468 kb on - strand, within GFF1033 at 276.471 kb on + strand, within GFF1033 at 276.516 kb on + strand, within GFF1033 at 276.517 kb on - strand, within GFF1033 at 276.519 kb on + strand, within GFF1033 at 276.555 kb on + strand at 276.555 kb on + strand at 276.675 kb on + strand at 276.696 kb on + strand at 276.726 kb on + strand, within GFF1034 at 276.726 kb on + strand, within GFF1034 at 276.726 kb on + strand, within GFF1034 at 276.727 kb on - strand, within GFF1034 at 276.760 kb on + strand, within GFF1034 at 276.760 kb on + strand, within GFF1034 at 276.761 kb on - strand, within GFF1034 at 276.761 kb on - strand, within GFF1034 at 276.761 kb on - strand, within GFF1034 at 276.839 kb on - strand, within GFF1034 at 276.855 kb on - strand, within GFF1034 at 277.061 kb on + strand, within GFF1035 at 277.189 kb on - strand, within GFF1035 at 277.208 kb on + strand, within GFF1035 at 277.287 kb on + strand, within GFF1035 at 277.287 kb on + strand, within GFF1035 at 277.287 kb on + strand, within GFF1035 at 277.287 kb on + strand, within GFF1035 at 277.288 kb on - strand, within GFF1035 at 277.297 kb on + strand, within GFF1035 at 277.298 kb on - strand, within GFF1035 at 277.301 kb on + strand, within GFF1035 at 277.301 kb on + strand, within GFF1035 at 277.302 kb on - strand, within GFF1035 at 277.302 kb on - strand, within GFF1035 at 277.408 kb on + strand at 277.408 kb on + strand at 277.409 kb on - strand at 277.409 kb on - strand at 277.509 kb on + strand at 277.509 kb on + strand at 277.593 kb on + strand at 277.593 kb on + strand at 277.593 kb on + strand at 277.681 kb on - strand, within GFF1036 at 277.681 kb on - strand, within GFF1036 at 277.709 kb on - strand, within GFF1036 at 277.716 kb on + strand, within GFF1036 at 277.716 kb on + strand, within GFF1036 at 277.738 kb on + strand, within GFF1036 at 277.739 kb on - strand, within GFF1036 at 277.739 kb on - strand, within GFF1036 at 277.935 kb on + strand, within GFF1036 at 277.963 kb on + strand, within GFF1036 at 277.964 kb on - strand, within GFF1036 at 278.437 kb on + strand, within GFF1036 at 278.437 kb on + strand, within GFF1036 at 278.437 kb on + strand, within GFF1036 at 278.438 kb on - strand, within GFF1036 at 278.438 kb on - strand, within GFF1036 at 278.519 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.527 kb on + strand, within GFF1036 at 278.528 kb on - strand, within GFF1036 at 278.528 kb on - strand, within GFF1036 at 278.528 kb on - strand, within GFF1036 at 278.528 kb on - strand, within GFF1036 at 278.545 kb on + strand, within GFF1036 at 278.547 kb on + strand, within GFF1036 at 278.547 kb on + strand, within GFF1036 at 278.547 kb on + strand, within GFF1036 at 278.548 kb on - strand, within GFF1036 at 278.548 kb on - strand, within GFF1036 at 278.557 kb on - strand, within GFF1036 at 278.812 kb on - strand, within GFF1036 at 278.812 kb on - strand, within GFF1036 at 278.820 kb on - strand, within GFF1036 at 278.820 kb on - strand, within GFF1036 at 278.820 kb on - strand, within GFF1036 at 278.871 kb on + strand, within GFF1036 at 278.952 kb on + strand, within GFF1036 at 278.970 kb on + strand, within GFF1036 at 278.971 kb on - strand, within GFF1036 at 279.001 kb on + strand, within GFF1036 at 279.001 kb on + strand, within GFF1036 at 279.001 kb on + strand, within GFF1036 at 279.001 kb on + strand, within GFF1036 at 279.001 kb on + strand, within GFF1036 at 279.001 kb on + strand, within GFF1036 at 279.002 kb on - strand, within GFF1036 at 279.002 kb on - strand, within GFF1036 at 279.003 kb on + strand, within GFF1036 at 279.004 kb on - strand, within GFF1036 at 279.004 kb on - strand, within GFF1036 at 279.085 kb on + strand, within GFF1036 at 279.085 kb on + strand, within GFF1036 at 279.085 kb on + strand, within GFF1036 at 279.086 kb on - strand, within GFF1036 at 279.086 kb on - strand, within GFF1036 at 279.088 kb on - strand, within GFF1036 at 279.095 kb on + strand, within GFF1036 at 279.095 kb on + strand, within GFF1036 at 279.096 kb on - strand, within GFF1036 at 279.454 kb on + strand at 279.454 kb on + strand at 279.454 kb on + strand at 279.454 kb on + strand at 279.454 kb on + strand at 279.454 kb on + strand at 279.465 kb on + strand at 279.465 kb on + strand at 279.522 kb on + strand at 279.523 kb on - strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.535 kb on - strand at 279.541 kb on + strand at 279.541 kb on + strand at 279.541 kb on + strand at 279.541 kb on + strand at 279.541 kb on + strand at 279.542 kb on - strand at 279.542 kb on - strand at 279.542 kb on - strand at 279.542 kb on - strand at 279.579 kb on + strand at 279.579 kb on + strand at 279.580 kb on - strand at 279.580 kb on - strand at 279.580 kb on - strand at 279.641 kb on + strand, within GFF1037 at 279.778 kb on - strand, within GFF1037 at 279.792 kb on + strand, within GFF1037 at 279.792 kb on + strand, within GFF1037 at 279.800 kb on + strand, within GFF1037 at 279.825 kb on + strand, within GFF1037 at 279.826 kb on - strand, within GFF1037 at 279.830 kb on + strand, within GFF1037 at 279.831 kb on - strand, within GFF1037 at 279.860 kb on + strand, within GFF1037 at 279.860 kb on + strand, within GFF1037 at 279.861 kb on - strand, within GFF1037 at 279.861 kb on - strand, within GFF1037 at 279.890 kb on + strand, within GFF1037 at 279.990 kb on + strand at 280.003 kb on + strand at 280.004 kb on - strand at 280.004 kb on - strand at 280.008 kb on + strand at 280.008 kb on + strand at 280.009 kb on - strand at 280.114 kb on + strand, within GFF1038 at 280.115 kb on - strand, within GFF1038 at 280.126 kb on + strand, within GFF1038 at 280.126 kb on + strand, within GFF1038 at 280.126 kb on + strand, within GFF1038 at 280.126 kb on + strand, within GFF1038 at 280.127 kb on - strand, within GFF1038 at 280.127 kb on - strand, within GFF1038 at 280.127 kb on - strand, within GFF1038 at 280.127 kb on - strand, within GFF1038 at 280.127 kb on - strand, within GFF1038 at 280.142 kb on + strand, within GFF1038 at 280.142 kb on + strand, within GFF1038 at 280.142 kb on + strand, within GFF1038 at 280.143 kb on - strand, within GFF1038 at 280.143 kb on - strand, within GFF1038 at 280.143 kb on - strand, within GFF1038 at 280.165 kb on + strand, within GFF1038 at 280.165 kb on + strand, within GFF1038 at 280.165 kb on + strand, within GFF1038 at 280.166 kb on - strand, within GFF1038 at 280.356 kb on + strand, within GFF1038 at 280.356 kb on + strand, within GFF1038 at 280.356 kb on + strand, within GFF1038 at 280.356 kb on + strand, within GFF1038 at 280.356 kb on + strand, within GFF1038 at 280.357 kb on - strand, within GFF1038 at 280.357 kb on - strand, within GFF1038 at 280.357 kb on - strand, within GFF1038 at 280.357 kb on - strand, within GFF1038 at 280.357 kb on - strand, within GFF1038 at 280.360 kb on + strand, within GFF1038 at 280.360 kb on + strand, within GFF1038 at 280.360 kb on + strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.361 kb on - strand, within GFF1038 at 280.362 kb on - strand, within GFF1038 at 280.395 kb on + strand, within GFF1038 at 280.395 kb on + strand, within GFF1038 at 280.419 kb on - strand, within GFF1038 at 280.509 kb on - strand, within GFF1038 at 280.539 kb on + strand, within GFF1038 at 280.539 kb on + strand, within GFF1038 at 280.539 kb on + strand, within GFF1038 at 280.539 kb on + strand, within GFF1038 at 280.539 kb on + strand, within GFF1038 at 280.540 kb on - strand, within GFF1038 at 280.540 kb on - strand, within GFF1038 at 280.540 kb on - strand, within GFF1038 at 280.540 kb on - strand, within GFF1038
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 276,441 + GFF1033 0.82 -1.1 276,442 - GFF1033 0.82 +0.7 276,442 - GFF1033 0.82 -0.9 276,442 - GFF1033 0.82 +0.1 276,468 - GFF1033 0.84 -0.8 276,471 + GFF1033 0.84 -0.4 276,516 + GFF1033 0.88 -0.8 276,517 - GFF1033 0.88 -0.3 276,519 + GFF1033 0.88 -1.0 276,555 + -0.4 276,555 + -1.8 276,675 + -0.6 276,696 + +0.4 276,726 + GFF1034 0.19 -0.4 276,726 + GFF1034 0.19 -0.1 276,726 + GFF1034 0.19 +0.3 276,727 - GFF1034 0.19 -1.2 276,760 + GFF1034 0.32 -1.4 276,760 + GFF1034 0.32 -0.9 276,761 - GFF1034 0.32 +1.1 276,761 - GFF1034 0.32 -1.1 276,761 - GFF1034 0.32 -0.1 276,839 - GFF1034 0.62 -1.1 276,855 - GFF1034 0.69 -0.1 277,061 + GFF1035 0.26 +0.1 277,189 - GFF1035 0.53 -2.1 277,208 + GFF1035 0.57 -1.2 277,287 + GFF1035 0.74 -0.1 277,287 + GFF1035 0.74 -1.1 277,287 + GFF1035 0.74 +0.6 277,287 + GFF1035 0.74 -1.3 277,288 - GFF1035 0.74 -0.3 277,297 + GFF1035 0.76 +0.9 277,298 - GFF1035 0.76 -1.7 277,301 + GFF1035 0.77 -0.4 277,301 + GFF1035 0.77 -2.8 277,302 - GFF1035 0.77 -1.6 277,302 - GFF1035 0.77 +0.1 277,408 + -0.8 277,408 + -0.1 277,409 - +0.4 277,409 - +0.6 277,509 + -1.1 277,509 + -1.4 277,593 + -1.9 277,593 + -0.7 277,593 + -1.1 277,681 - GFF1036 0.12 -1.6 277,681 - GFF1036 0.12 -1.7 277,709 - GFF1036 0.14 -1.7 277,716 + GFF1036 0.14 -0.1 277,716 + GFF1036 0.14 -0.4 277,738 + GFF1036 0.15 +0.1 277,739 - GFF1036 0.15 -1.1 277,739 - GFF1036 0.15 -1.1 277,935 + GFF1036 0.24 -0.7 277,963 + GFF1036 0.25 -0.8 277,964 - GFF1036 0.26 -1.1 278,437 + GFF1036 0.47 -0.1 278,437 + GFF1036 0.47 -1.4 278,437 + GFF1036 0.47 -1.4 278,438 - GFF1036 0.47 -0.7 278,438 - GFF1036 0.47 -1.4 278,519 + GFF1036 0.51 -1.3 278,527 + GFF1036 0.52 -1.8 278,527 + GFF1036 0.52 -0.3 278,527 + GFF1036 0.52 -0.6 278,527 + GFF1036 0.52 -0.9 278,527 + GFF1036 0.52 -1.4 278,527 + GFF1036 0.52 -1.7 278,527 + GFF1036 0.52 -0.1 278,527 + GFF1036 0.52 -2.1 278,527 + GFF1036 0.52 +0.4 278,527 + GFF1036 0.52 -0.4 278,527 + GFF1036 0.52 -1.1 278,528 - GFF1036 0.52 -0.8 278,528 - GFF1036 0.52 -0.5 278,528 - GFF1036 0.52 -0.1 278,528 - GFF1036 0.52 -0.1 278,545 + GFF1036 0.52 +0.7 278,547 + GFF1036 0.52 -0.7 278,547 + GFF1036 0.52 -1.4 278,547 + GFF1036 0.52 +0.9 278,548 - GFF1036 0.52 +0.6 278,548 - GFF1036 0.52 -2.3 278,557 - GFF1036 0.53 -0.9 278,812 - GFF1036 0.65 -1.7 278,812 - GFF1036 0.65 -0.1 278,820 - GFF1036 0.65 -0.1 278,820 - GFF1036 0.65 -1.4 278,820 - GFF1036 0.65 -1.9 278,871 + GFF1036 0.67 -2.3 278,952 + GFF1036 0.71 -1.8 278,970 + GFF1036 0.72 -0.3 278,971 - GFF1036 0.72 -1.1 279,001 + GFF1036 0.73 -0.3 279,001 + GFF1036 0.73 -0.1 279,001 + GFF1036 0.73 -1.1 279,001 + GFF1036 0.73 +0.4 279,001 + GFF1036 0.73 -0.9 279,001 + GFF1036 0.73 -1.1 279,002 - GFF1036 0.73 -0.1 279,002 - GFF1036 0.73 -0.1 279,003 + GFF1036 0.73 -2.0 279,004 - GFF1036 0.74 -0.6 279,004 - GFF1036 0.74 -1.1 279,085 + GFF1036 0.77 +0.6 279,085 + GFF1036 0.77 -0.9 279,085 + GFF1036 0.77 +0.5 279,086 - GFF1036 0.77 -1.0 279,086 - GFF1036 0.77 -1.2 279,088 - GFF1036 0.77 -0.3 279,095 + GFF1036 0.78 -2.7 279,095 + GFF1036 0.78 -1.1 279,096 - GFF1036 0.78 -1.4 279,454 + -1.1 279,454 + -0.0 279,454 + -0.7 279,454 + -1.4 279,454 + -1.4 279,454 + -1.4 279,465 + -1.1 279,465 + -3.2 279,522 + -1.0 279,523 - -0.4 279,534 + +0.0 279,534 + +0.4 279,535 - -0.2 279,541 + -0.4 279,541 + -0.5 279,541 + -0.7 279,541 + -1.3 279,541 + -0.6 279,542 - -1.1 279,542 - -0.1 279,542 - -1.7 279,542 - -1.1 279,579 + +0.7 279,579 + +1.1 279,580 - +0.1 279,580 - +0.6 279,580 - -0.4 279,641 + GFF1037 0.14 +0.2 279,778 - GFF1037 0.46 -1.1 279,792 + GFF1037 0.50 +0.9 279,792 + GFF1037 0.50 -1.8 279,800 + GFF1037 0.52 -2.4 279,825 + GFF1037 0.58 -0.6 279,826 - GFF1037 0.58 +0.9 279,830 + GFF1037 0.59 -0.8 279,831 - GFF1037 0.59 -0.1 279,860 + GFF1037 0.66 -1.1 279,860 + GFF1037 0.66 +0.2 279,861 - GFF1037 0.66 -0.8 279,861 - GFF1037 0.66 -1.1 279,890 + GFF1037 0.73 -0.9 279,990 + +0.1 280,003 + -0.7 280,004 - -0.1 280,004 - +0.5 280,008 + -0.1 280,008 + -0.2 280,009 - -0.5 280,114 + GFF1038 0.14 -1.2 280,115 - GFF1038 0.14 -1.1 280,126 + GFF1038 0.15 -2.1 280,126 + GFF1038 0.15 +0.9 280,126 + GFF1038 0.15 +0.1 280,126 + GFF1038 0.15 -0.6 280,127 - GFF1038 0.15 -0.8 280,127 - GFF1038 0.15 -1.7 280,127 - GFF1038 0.15 -2.1 280,127 - GFF1038 0.15 -1.6 280,127 - GFF1038 0.15 -1.7 280,142 + GFF1038 0.17 +0.9 280,142 + GFF1038 0.17 -1.0 280,142 + GFF1038 0.17 -0.6 280,143 - GFF1038 0.17 -0.6 280,143 - GFF1038 0.17 -1.2 280,143 - GFF1038 0.17 -1.1 280,165 + GFF1038 0.20 -0.5 280,165 + GFF1038 0.20 -0.5 280,165 + GFF1038 0.20 -0.8 280,166 - GFF1038 0.20 -0.7 280,356 + GFF1038 0.45 -0.3 280,356 + GFF1038 0.45 -1.2 280,356 + GFF1038 0.45 -0.9 280,356 + GFF1038 0.45 +0.1 280,356 + GFF1038 0.45 -0.9 280,357 - GFF1038 0.45 -0.1 280,357 - GFF1038 0.45 -1.0 280,357 - GFF1038 0.45 -0.3 280,357 - GFF1038 0.45 -0.5 280,357 - GFF1038 0.45 -0.0 280,360 + GFF1038 0.45 -1.4 280,360 + GFF1038 0.45 -0.4 280,360 + GFF1038 0.45 -0.8 280,361 - GFF1038 0.45 -0.3 280,361 - GFF1038 0.45 -1.3 280,361 - GFF1038 0.45 -0.1 280,361 - GFF1038 0.45 +0.5 280,361 - GFF1038 0.45 -0.9 280,361 - GFF1038 0.45 -0.6 280,361 - GFF1038 0.45 -0.9 280,361 - GFF1038 0.45 -0.3 280,362 - GFF1038 0.46 -0.7 280,395 + GFF1038 0.50 -0.6 280,395 + GFF1038 0.50 -1.1 280,419 - GFF1038 0.53 -1.0 280,509 - GFF1038 0.64 +0.9 280,539 + GFF1038 0.68 -1.1 280,539 + GFF1038 0.68 -0.4 280,539 + GFF1038 0.68 -0.3 280,539 + GFF1038 0.68 -0.3 280,539 + GFF1038 0.68 -1.1 280,540 - GFF1038 0.68 -1.1 280,540 - GFF1038 0.68 -2.0 280,540 - GFF1038 0.68 +0.4 280,540 - GFF1038 0.68 -0.8
Or see this region's nucleotide sequence