Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06795

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06794 and MPMX19_06795 are separated by 28 nucleotidesMPMX19_06795 and MPMX19_06796 are separated by 20 nucleotidesMPMX19_06796 and MPMX19_06797 are separated by 14 nucleotides MPMX19_06794: MPMX19_06794 - Glutarate-semialdehyde dehydrogenase, at 59,753 to 61,207 _06794 MPMX19_06795: MPMX19_06795 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 61,236 to 62,060 _06795 MPMX19_06796: MPMX19_06796 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 62,081 to 62,884 _06796 MPMX19_06797: MPMX19_06797 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 62,899 to 63,288 _06797 Position (kb) 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.300 kb on + strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.301 kb on - strand, within MPMX19_06794at 60.361 kb on - strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.825 kb on + strand, within MPMX19_06794at 60.826 kb on - strand, within MPMX19_06794at 60.826 kb on - strand, within MPMX19_06794at 60.826 kb on - strand, within MPMX19_06794at 60.862 kb on - strand, within MPMX19_06794at 60.862 kb on - strand, within MPMX19_06794at 61.215 kb on - strandat 61.241 kb on - strandat 61.387 kb on + strand, within MPMX19_06795at 61.388 kb on - strand, within MPMX19_06795at 61.661 kb on + strand, within MPMX19_06795at 61.975 kb on + strand, within MPMX19_06795at 61.975 kb on + strand, within MPMX19_06795at 61.976 kb on - strand, within MPMX19_06795at 61.976 kb on - strand, within MPMX19_06795at 62.082 kb on + strandat 62.083 kb on - strandat 62.083 kb on - strandat 62.083 kb on - strandat 62.118 kb on + strandat 62.308 kb on - strand, within MPMX19_06796at 62.308 kb on - strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.912 kb on + strandat 62.912 kb on + strandat 62.912 kb on + strandat 62.913 kb on - strandat 62.913 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
60,300 + MPMX19_06794 0.38 -0.2
60,300 + MPMX19_06794 0.38 +0.6
60,300 + MPMX19_06794 0.38 -2.7
60,300 + MPMX19_06794 0.38 -1.4
60,300 + MPMX19_06794 0.38 -0.4
60,300 + MPMX19_06794 0.38 +0.3
60,301 - MPMX19_06794 0.38 -0.9
60,301 - MPMX19_06794 0.38 -0.8
60,301 - MPMX19_06794 0.38 -0.4
60,301 - MPMX19_06794 0.38 -0.5
60,301 - MPMX19_06794 0.38 -1.5
60,301 - MPMX19_06794 0.38 -3.0
60,361 - MPMX19_06794 0.42 -0.6
60,825 + MPMX19_06794 0.74 -0.7
60,825 + MPMX19_06794 0.74 +0.8
60,825 + MPMX19_06794 0.74 -2.5
60,825 + MPMX19_06794 0.74 +0.0
60,826 - MPMX19_06794 0.74 -1.0
60,826 - MPMX19_06794 0.74 -0.4
60,826 - MPMX19_06794 0.74 -1.7
60,862 - MPMX19_06794 0.76 -0.7
60,862 - MPMX19_06794 0.76 -0.5
61,215 - -0.9
61,241 - +0.0
61,387 + MPMX19_06795 0.18 +1.2
61,388 - MPMX19_06795 0.18 -0.1
61,661 + MPMX19_06795 0.52 -1.5
61,975 + MPMX19_06795 0.90 -1.6
61,975 + MPMX19_06795 0.90 -0.5
61,976 - MPMX19_06795 0.90 -0.0
61,976 - MPMX19_06795 0.90 +0.8
62,082 + -1.5
62,083 - +0.2
62,083 - +0.1
62,083 - -1.4
62,118 + -0.5
62,308 - MPMX19_06796 0.28 -0.4
62,308 - MPMX19_06796 0.28 -0.7
62,487 + MPMX19_06796 0.50 +0.2
62,487 + MPMX19_06796 0.50 -0.9
62,487 + MPMX19_06796 0.50 -0.1
62,487 + MPMX19_06796 0.50 +0.3
62,487 + MPMX19_06796 0.50 +0.2
62,488 - MPMX19_06796 0.51 -1.9
62,488 - MPMX19_06796 0.51 -0.5
62,488 - MPMX19_06796 0.51 -0.1
62,488 - MPMX19_06796 0.51 -0.1
62,488 - MPMX19_06796 0.51 -1.0
62,488 - MPMX19_06796 0.51 -0.1
62,488 - MPMX19_06796 0.51 +0.1
62,488 - MPMX19_06796 0.51 +0.0
62,488 - MPMX19_06796 0.51 -1.0
62,488 - MPMX19_06796 0.51 -1.1
62,766 + MPMX19_06796 0.85 -0.1
62,766 + MPMX19_06796 0.85 -1.7
62,766 + MPMX19_06796 0.85 +2.5
62,766 + MPMX19_06796 0.85 -1.7
62,766 + MPMX19_06796 0.85 -0.9
62,766 + MPMX19_06796 0.85 -1.1
62,767 - MPMX19_06796 0.85 -0.6
62,767 - MPMX19_06796 0.85 +1.0
62,767 - MPMX19_06796 0.85 -1.7
62,767 - MPMX19_06796 0.85 +0.6
62,767 - MPMX19_06796 0.85 -0.6
62,912 + -0.4
62,912 + -0.4
62,912 + -0.3
62,913 - -0.5
62,913 - -0.4

Or see this region's nucleotide sequence