Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06425

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06424 and MPMX19_06425 are separated by 184 nucleotides MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067 _06424 MPMX19_06425: MPMX19_06425 - hypothetical protein, at 197,252 to 197,722 _06425 Position (kb) 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 196.292 kb on + strand, within MPMX19_06424at 196.496 kb on + strand, within MPMX19_06424at 196.576 kb on + strand, within MPMX19_06424at 196.577 kb on - strand, within MPMX19_06424at 196.577 kb on - strand, within MPMX19_06424at 196.586 kb on + strand, within MPMX19_06424at 196.587 kb on - strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.901 kb on + strand, within MPMX19_06424at 196.901 kb on + strand, within MPMX19_06424at 196.920 kb on + strand, within MPMX19_06424at 196.921 kb on - strand, within MPMX19_06424at 197.010 kb on - strandat 197.010 kb on - strandat 197.130 kb on + strandat 197.130 kb on + strandat 197.164 kb on + strandat 197.164 kb on + strandat 197.164 kb on + strandat 197.165 kb on - strandat 197.165 kb on - strandat 197.165 kb on - strandat 197.208 kb on + strandat 197.208 kb on + strandat 197.208 kb on + strandat 197.209 kb on - strandat 197.209 kb on - strandat 197.209 kb on - strandat 197.219 kb on + strandat 197.219 kb on + strandat 197.219 kb on + strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.793 kb on - strandat 197.793 kb on - strandat 197.793 kb on - strandat 197.826 kb on + strandat 197.826 kb on + strandat 197.827 kb on - strandat 197.841 kb on - strandat 197.841 kb on - strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.004 kb on - strandat 198.004 kb on - strandat 198.113 kb on + strandat 198.113 kb on + strandat 198.114 kb on - strandat 198.114 kb on - strandat 198.114 kb on - strandat 198.114 kb on - strandat 198.179 kb on + strandat 198.179 kb on + strandat 198.179 kb on + strandat 198.179 kb on + strandat 198.180 kb on - strandat 198.180 kb on - strandat 198.304 kb on + strandat 198.305 kb on - strandat 198.305 kb on - strandat 198.436 kb on + strandat 198.436 kb on + strandat 198.436 kb on + strandat 198.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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196,292 + MPMX19_06424 0.39 +0.6
196,496 + MPMX19_06424 0.55 -1.0
196,576 + MPMX19_06424 0.61 -0.5
196,577 - MPMX19_06424 0.61 -0.5
196,577 - MPMX19_06424 0.61 -1.0
196,586 + MPMX19_06424 0.62 -0.4
196,587 - MPMX19_06424 0.62 +0.6
196,640 + MPMX19_06424 0.66 -0.7
196,640 + MPMX19_06424 0.66 +0.2
196,640 + MPMX19_06424 0.66 -0.7
196,640 + MPMX19_06424 0.66 +0.2
196,640 + MPMX19_06424 0.66 -0.7
196,640 + MPMX19_06424 0.66 -0.6
196,640 + MPMX19_06424 0.66 +2.2
196,641 - MPMX19_06424 0.66 -2.0
196,641 - MPMX19_06424 0.66 +0.9
196,641 - MPMX19_06424 0.66 +0.3
196,641 - MPMX19_06424 0.66 -1.5
196,787 + MPMX19_06424 0.78 +0.0
196,787 + MPMX19_06424 0.78 +0.0
196,787 + MPMX19_06424 0.78 +0.4
196,787 + MPMX19_06424 0.78 -2.1
196,787 + MPMX19_06424 0.78 -1.7
196,787 + MPMX19_06424 0.78 +0.5
196,787 + MPMX19_06424 0.78 -0.2
196,787 + MPMX19_06424 0.78 -0.8
196,787 + MPMX19_06424 0.78 +2.6
196,787 + MPMX19_06424 0.78 +0.4
196,787 + MPMX19_06424 0.78 +0.8
196,787 + MPMX19_06424 0.78 +0.6
196,787 + MPMX19_06424 0.78 -0.1
196,787 + MPMX19_06424 0.78 +0.0
196,787 + MPMX19_06424 0.78 +0.5
196,787 + MPMX19_06424 0.78 +0.6
196,787 + MPMX19_06424 0.78 -0.4
196,788 - MPMX19_06424 0.78 -1.2
196,788 - MPMX19_06424 0.78 +0.2
196,788 - MPMX19_06424 0.78 +0.9
196,788 - MPMX19_06424 0.78 -1.5
196,788 - MPMX19_06424 0.78 -1.4
196,788 - MPMX19_06424 0.78 -0.7
196,788 - MPMX19_06424 0.78 -0.4
196,788 - MPMX19_06424 0.78 +0.7
196,788 - MPMX19_06424 0.78 +0.9
196,901 + MPMX19_06424 0.87 -0.9
196,901 + MPMX19_06424 0.87 -1.1
196,920 + MPMX19_06424 0.88 +0.5
196,921 - MPMX19_06424 0.88 -1.8
197,010 - -1.1
197,010 - -0.3
197,130 + +0.4
197,130 + -0.4
197,164 + +0.3
197,164 + -0.4
197,164 + -2.2
197,165 - +0.1
197,165 - +0.8
197,165 - +1.2
197,208 + -1.0
197,208 + -0.8
197,208 + +0.4
197,209 - +0.1
197,209 - -0.6
197,209 - -0.2
197,219 + -0.4
197,219 + -0.4
197,219 + +0.9
197,220 - +0.2
197,220 - -0.2
197,220 - -1.2
197,220 - -1.8
197,220 - -0.7
197,220 - -1.0
197,793 - +0.3
197,793 - -2.2
197,793 - +0.0
197,826 + -1.5
197,826 + +0.4
197,827 - -1.2
197,841 - -0.6
197,841 - -0.0
198,003 + +0.0
198,003 + +0.1
198,003 + -1.3
198,003 + -1.4
198,004 - -0.2
198,004 - -0.6
198,113 + +0.1
198,113 + -1.1
198,114 - -0.9
198,114 - -0.5
198,114 - -0.6
198,114 - -1.4
198,179 + -0.1
198,179 + -0.6
198,179 + +0.8
198,179 + +0.2
198,180 - -1.5
198,180 - -1.2
198,304 + -1.5
198,305 - +0.2
198,305 - -1.0
198,436 + +0.6
198,436 + +0.1
198,436 + -0.1
198,437 - -1.4

Or see this region's nucleotide sequence