Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06338

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06336 and MPMX19_06337 are separated by 185 nucleotidesMPMX19_06337 and MPMX19_06338 are separated by 19 nucleotidesMPMX19_06338 and MPMX19_06339 are separated by 21 nucleotidesMPMX19_06339 and MPMX19_06340 are separated by 174 nucleotidesMPMX19_06340 and MPMX19_06341 are separated by 75 nucleotides MPMX19_06336: MPMX19_06336 - putative oxidoreductase CzcO, at 105,219 to 106,310 _06336 MPMX19_06337: MPMX19_06337 - Arsenic resistance transcriptional regulator ArsR1, at 106,496 to 106,846 _06337 MPMX19_06338: MPMX19_06338 - hypothetical protein, at 106,866 to 107,831 _06338 MPMX19_06339: MPMX19_06339 - hypothetical protein, at 107,853 to 108,089 _06339 MPMX19_06340: MPMX19_06340 - hypothetical protein, at 108,264 to 108,413 _06340 MPMX19_06341: MPMX19_06341 - hypothetical protein, at 108,489 to 108,833 _06341 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1at 105.869 kb on - strand, within MPMX19_06336at 105.869 kb on - strand, within MPMX19_06336at 106.019 kb on - strand, within MPMX19_06336at 106.030 kb on + strand, within MPMX19_06336at 106.030 kb on + strand, within MPMX19_06336at 106.030 kb on + strand, within MPMX19_06336at 106.042 kb on + strand, within MPMX19_06336at 106.042 kb on + strand, within MPMX19_06336at 106.043 kb on - strand, within MPMX19_06336at 106.043 kb on - strand, within MPMX19_06336at 106.043 kb on - strand, within MPMX19_06336at 106.287 kb on + strandat 106.356 kb on + strandat 106.356 kb on + strandat 106.374 kb on + strandat 106.374 kb on + strandat 106.374 kb on + strandat 106.374 kb on + strandat 106.374 kb on + strandat 106.374 kb on + strandat 106.374 kb on + strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.375 kb on - strandat 106.377 kb on + strandat 106.377 kb on + strandat 106.377 kb on + strandat 106.377 kb on + strandat 106.377 kb on + strandat 106.377 kb on + strandat 106.378 kb on - strandat 106.378 kb on - strandat 106.412 kb on + strandat 106.412 kb on + strandat 106.453 kb on + strandat 106.453 kb on + strandat 106.453 kb on + strandat 106.484 kb on - strandat 106.489 kb on + strandat 106.490 kb on - strandat 106.495 kb on + strandat 106.495 kb on + strandat 106.495 kb on + strandat 106.495 kb on + strandat 106.495 kb on + strandat 106.495 kb on + strandat 106.496 kb on - strandat 106.496 kb on - strandat 106.496 kb on - strandat 106.496 kb on - strandat 106.496 kb on - strandat 106.496 kb on - strandat 106.496 kb on - strandat 106.528 kb on - strandat 106.700 kb on + strand, within MPMX19_06337at 106.700 kb on + strand, within MPMX19_06337at 106.700 kb on + strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.701 kb on - strand, within MPMX19_06337at 106.880 kb on + strandat 106.881 kb on - strandat 106.905 kb on + strandat 106.906 kb on - strandat 107.036 kb on - strand, within MPMX19_06338at 107.058 kb on + strand, within MPMX19_06338at 107.059 kb on - strand, within MPMX19_06338at 107.059 kb on - strand, within MPMX19_06338at 107.089 kb on - strand, within MPMX19_06338at 107.089 kb on - strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.280 kb on + strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.281 kb on - strand, within MPMX19_06338at 107.300 kb on + strand, within MPMX19_06338at 107.300 kb on + strand, within MPMX19_06338at 107.300 kb on + strand, within MPMX19_06338at 107.300 kb on + strand, within MPMX19_06338at 107.301 kb on - strand, within MPMX19_06338at 107.349 kb on + strand, within MPMX19_06338at 107.349 kb on + strand, within MPMX19_06338at 107.349 kb on + strand, within MPMX19_06338at 107.349 kb on + strand, within MPMX19_06338at 107.349 kb on + strand, within MPMX19_06338at 107.349 kb on + strand, within MPMX19_06338at 107.350 kb on - strand, within MPMX19_06338at 107.350 kb on - strand, within MPMX19_06338at 107.350 kb on - strand, within MPMX19_06338at 107.350 kb on - strand, within MPMX19_06338at 107.350 kb on - strand, within MPMX19_06338at 107.350 kb on - strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.361 kb on + strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.362 kb on - strand, within MPMX19_06338at 107.433 kb on + strand, within MPMX19_06338at 107.434 kb on - strand, within MPMX19_06338at 107.478 kb on + strand, within MPMX19_06338at 107.478 kb on + strand, within MPMX19_06338at 107.478 kb on + strand, within MPMX19_06338at 107.479 kb on - strand, within MPMX19_06338at 107.479 kb on - strand, within MPMX19_06338at 107.479 kb on - strand, within MPMX19_06338at 107.520 kb on + strand, within MPMX19_06338at 107.520 kb on + strand, within MPMX19_06338at 107.520 kb on + strand, within MPMX19_06338at 107.520 kb on + strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.521 kb on - strand, within MPMX19_06338at 107.547 kb on + strand, within MPMX19_06338at 107.547 kb on + strand, within MPMX19_06338at 107.547 kb on + strand, within MPMX19_06338at 107.547 kb on + strand, within MPMX19_06338at 107.547 kb on + strand, within MPMX19_06338at 107.547 kb on + strand, within MPMX19_06338at 107.698 kb on + strand, within MPMX19_06338at 107.699 kb on - strand, within MPMX19_06338at 107.699 kb on - strand, within MPMX19_06338at 107.699 kb on - strand, within MPMX19_06338at 107.805 kb on + strandat 107.805 kb on + strandat 107.805 kb on + strandat 108.087 kb on + strandat 108.087 kb on + strandat 108.088 kb on - strandat 108.088 kb on - strandat 108.130 kb on + strandat 108.130 kb on + strandat 108.172 kb on + strandat 108.172 kb on + strandat 108.173 kb on - strandat 108.173 kb on - strandat 108.173 kb on - strandat 108.173 kb on - strandat 108.175 kb on + strandat 108.175 kb on + strandat 108.319 kb on + strand, within MPMX19_06340at 108.319 kb on + strand, within MPMX19_06340at 108.320 kb on - strand, within MPMX19_06340at 108.344 kb on + strand, within MPMX19_06340at 108.344 kb on + strand, within MPMX19_06340at 108.345 kb on - strand, within MPMX19_06340at 108.345 kb on - strand, within MPMX19_06340at 108.345 kb on - strand, within MPMX19_06340at 108.348 kb on + strand, within MPMX19_06340at 108.349 kb on - strand, within MPMX19_06340at 108.485 kb on + strandat 108.485 kb on + strandat 108.485 kb on + strandat 108.486 kb on - strandat 108.486 kb on - strandat 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.606 kb on + strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.607 kb on - strand, within MPMX19_06341at 108.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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105,869 - MPMX19_06336 0.60 -2.7
105,869 - MPMX19_06336 0.60 -0.6
106,019 - MPMX19_06336 0.73 -0.1
106,030 + MPMX19_06336 0.74 -0.5
106,030 + MPMX19_06336 0.74 -1.0
106,030 + MPMX19_06336 0.74 -0.4
106,042 + MPMX19_06336 0.75 -0.7
106,042 + MPMX19_06336 0.75 -0.0
106,043 - MPMX19_06336 0.75 +0.5
106,043 - MPMX19_06336 0.75 -0.5
106,043 - MPMX19_06336 0.75 -0.4
106,287 + -0.7
106,356 + +0.0
106,356 + +0.2
106,374 + +1.0
106,374 + +0.2
106,374 + +0.3
106,374 + +1.5
106,374 + +1.0
106,374 + -1.0
106,374 + -1.2
106,375 - -0.8
106,375 - -1.0
106,375 - -2.4
106,375 - -1.2
106,375 - +0.3
106,375 - +0.2
106,375 - -0.4
106,375 - -1.1
106,375 - +0.7
106,377 + -1.0
106,377 + +0.0
106,377 + -1.0
106,377 + +1.3
106,377 + -0.1
106,377 + -0.5
106,378 - +0.1
106,378 - -0.6
106,412 + -0.2
106,412 + -1.5
106,453 + +0.8
106,453 + -1.0
106,453 + -0.4
106,484 - +0.0
106,489 + +0.1
106,490 - -1.0
106,495 + -0.4
106,495 + +0.1
106,495 + +0.9
106,495 + -0.5
106,495 + -1.4
106,495 + -0.5
106,496 - -1.5
106,496 - -2.2
106,496 - -1.0
106,496 - -0.9
106,496 - -1.3
106,496 - -1.3
106,496 - -1.1
106,528 - -0.8
106,700 + MPMX19_06337 0.58 +0.6
106,700 + MPMX19_06337 0.58 -1.5
106,700 + MPMX19_06337 0.58 -0.1
106,701 - MPMX19_06337 0.58 -0.4
106,701 - MPMX19_06337 0.58 -0.2
106,701 - MPMX19_06337 0.58 -1.3
106,701 - MPMX19_06337 0.58 -1.0
106,701 - MPMX19_06337 0.58 -2.3
106,701 - MPMX19_06337 0.58 -0.4
106,701 - MPMX19_06337 0.58 -1.4
106,880 + +0.3
106,881 - +0.2
106,905 + +0.0
106,906 - -0.6
107,036 - MPMX19_06338 0.18 +0.0
107,058 + MPMX19_06338 0.20 -0.2
107,059 - MPMX19_06338 0.20 +0.9
107,059 - MPMX19_06338 0.20 -0.4
107,089 - MPMX19_06338 0.23 -0.6
107,089 - MPMX19_06338 0.23 +0.6
107,280 + MPMX19_06338 0.43 +0.6
107,280 + MPMX19_06338 0.43 +0.3
107,280 + MPMX19_06338 0.43 -1.0
107,280 + MPMX19_06338 0.43 +1.1
107,280 + MPMX19_06338 0.43 +0.9
107,280 + MPMX19_06338 0.43 +0.3
107,280 + MPMX19_06338 0.43 +0.0
107,280 + MPMX19_06338 0.43 +0.3
107,280 + MPMX19_06338 0.43 -1.4
107,280 + MPMX19_06338 0.43 +0.5
107,280 + MPMX19_06338 0.43 +0.9
107,280 + MPMX19_06338 0.43 +0.8
107,280 + MPMX19_06338 0.43 +0.6
107,280 + MPMX19_06338 0.43 -0.0
107,280 + MPMX19_06338 0.43 +0.8
107,280 + MPMX19_06338 0.43 -0.5
107,280 + MPMX19_06338 0.43 -1.0
107,280 + MPMX19_06338 0.43 -0.7
107,280 + MPMX19_06338 0.43 -0.8
107,280 + MPMX19_06338 0.43 -0.5
107,280 + MPMX19_06338 0.43 -1.7
107,280 + MPMX19_06338 0.43 -0.5
107,280 + MPMX19_06338 0.43 +0.6
107,280 + MPMX19_06338 0.43 +0.3
107,281 - MPMX19_06338 0.43 -1.5
107,281 - MPMX19_06338 0.43 -0.8
107,281 - MPMX19_06338 0.43 -1.2
107,281 - MPMX19_06338 0.43 -0.2
107,281 - MPMX19_06338 0.43 -0.4
107,281 - MPMX19_06338 0.43 +1.6
107,281 - MPMX19_06338 0.43 +0.3
107,281 - MPMX19_06338 0.43 +0.4
107,281 - MPMX19_06338 0.43 -0.2
107,281 - MPMX19_06338 0.43 +0.9
107,281 - MPMX19_06338 0.43 -0.4
107,281 - MPMX19_06338 0.43 -0.8
107,281 - MPMX19_06338 0.43 -0.4
107,281 - MPMX19_06338 0.43 -0.0
107,281 - MPMX19_06338 0.43 -1.4
107,281 - MPMX19_06338 0.43 -0.0
107,281 - MPMX19_06338 0.43 +0.4
107,300 + MPMX19_06338 0.45 +0.9
107,300 + MPMX19_06338 0.45 -1.4
107,300 + MPMX19_06338 0.45 -1.4
107,300 + MPMX19_06338 0.45 +1.6
107,301 - MPMX19_06338 0.45 -0.5
107,349 + MPMX19_06338 0.50 +0.1
107,349 + MPMX19_06338 0.50 +0.3
107,349 + MPMX19_06338 0.50 -0.3
107,349 + MPMX19_06338 0.50 -1.2
107,349 + MPMX19_06338 0.50 +0.9
107,349 + MPMX19_06338 0.50 -1.7
107,350 - MPMX19_06338 0.50 +1.4
107,350 - MPMX19_06338 0.50 -1.4
107,350 - MPMX19_06338 0.50 +0.2
107,350 - MPMX19_06338 0.50 +0.6
107,350 - MPMX19_06338 0.50 -1.5
107,350 - MPMX19_06338 0.50 +0.9
107,361 + MPMX19_06338 0.51 -0.5
107,361 + MPMX19_06338 0.51 -2.0
107,361 + MPMX19_06338 0.51 -0.7
107,361 + MPMX19_06338 0.51 -0.1
107,361 + MPMX19_06338 0.51 +0.0
107,361 + MPMX19_06338 0.51 -0.2
107,361 + MPMX19_06338 0.51 -0.7
107,362 - MPMX19_06338 0.51 +0.8
107,362 - MPMX19_06338 0.51 +1.3
107,362 - MPMX19_06338 0.51 -0.7
107,362 - MPMX19_06338 0.51 -0.7
107,362 - MPMX19_06338 0.51 -0.2
107,362 - MPMX19_06338 0.51 -2.8
107,362 - MPMX19_06338 0.51 -1.0
107,362 - MPMX19_06338 0.51 -0.5
107,433 + MPMX19_06338 0.59 -1.0
107,434 - MPMX19_06338 0.59 -0.2
107,478 + MPMX19_06338 0.63 +1.3
107,478 + MPMX19_06338 0.63 -1.8
107,478 + MPMX19_06338 0.63 -0.9
107,479 - MPMX19_06338 0.63 -0.7
107,479 - MPMX19_06338 0.63 -0.6
107,479 - MPMX19_06338 0.63 +1.6
107,520 + MPMX19_06338 0.68 -0.2
107,520 + MPMX19_06338 0.68 +0.3
107,520 + MPMX19_06338 0.68 -1.7
107,520 + MPMX19_06338 0.68 -0.9
107,521 - MPMX19_06338 0.68 -0.7
107,521 - MPMX19_06338 0.68 +0.8
107,521 - MPMX19_06338 0.68 +0.6
107,521 - MPMX19_06338 0.68 +0.3
107,521 - MPMX19_06338 0.68 -2.1
107,521 - MPMX19_06338 0.68 -1.5
107,521 - MPMX19_06338 0.68 -0.4
107,547 + MPMX19_06338 0.70 -0.5
107,547 + MPMX19_06338 0.70 +0.2
107,547 + MPMX19_06338 0.70 +0.1
107,547 + MPMX19_06338 0.70 -1.0
107,547 + MPMX19_06338 0.70 -0.7
107,547 + MPMX19_06338 0.70 -1.4
107,698 + MPMX19_06338 0.86 +0.5
107,699 - MPMX19_06338 0.86 -0.3
107,699 - MPMX19_06338 0.86 -1.0
107,699 - MPMX19_06338 0.86 +0.0
107,805 + -1.2
107,805 + -0.2
107,805 + -0.2
108,087 + -0.4
108,087 + -0.7
108,088 - -2.5
108,088 - -0.7
108,130 + +0.2
108,130 + -1.0
108,172 + -0.5
108,172 + +1.4
108,173 - +0.9
108,173 - -0.6
108,173 - +0.2
108,173 - -0.4
108,175 + +0.3
108,175 + +0.3
108,319 + MPMX19_06340 0.37 +0.2
108,319 + MPMX19_06340 0.37 +0.3
108,320 - MPMX19_06340 0.37 +0.3
108,344 + MPMX19_06340 0.53 -0.1
108,344 + MPMX19_06340 0.53 -0.1
108,345 - MPMX19_06340 0.54 -0.7
108,345 - MPMX19_06340 0.54 -0.7
108,345 - MPMX19_06340 0.54 -3.0
108,348 + MPMX19_06340 0.56 +0.4
108,349 - MPMX19_06340 0.57 -0.0
108,485 + -2.5
108,485 + -0.1
108,485 + -1.1
108,486 - +0.0
108,486 - -1.9
108,606 + MPMX19_06341 0.34 +0.5
108,606 + MPMX19_06341 0.34 -0.8
108,606 + MPMX19_06341 0.34 -0.6
108,606 + MPMX19_06341 0.34 +0.6
108,606 + MPMX19_06341 0.34 -1.2
108,606 + MPMX19_06341 0.34 +0.2
108,606 + MPMX19_06341 0.34 +0.8
108,606 + MPMX19_06341 0.34 -0.0
108,607 - MPMX19_06341 0.34 +0.1
108,607 - MPMX19_06341 0.34 +0.6
108,607 - MPMX19_06341 0.34 -1.3
108,607 - MPMX19_06341 0.34 -2.0
108,607 - MPMX19_06341 0.34 -0.2
108,607 - MPMX19_06341 0.34 -0.6
108,607 - MPMX19_06341 0.34 +0.0
108,607 - MPMX19_06341 0.34 -1.2
108,825 - +0.8

Or see this region's nucleotide sequence