Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06024

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06023 and MPMX19_06024 are separated by 5 nucleotidesMPMX19_06024 and MPMX19_06025 are separated by 28 nucleotides MPMX19_06023: MPMX19_06023 - Putative aliphatic sulfonates-binding protein, at 176,418 to 177,500 _06023 MPMX19_06024: MPMX19_06024 - hypothetical protein, at 177,506 to 177,823 _06024 MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892 _06025 Position (kb) 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.582 kb on + strand, within MPMX19_06023at 176.582 kb on + strand, within MPMX19_06023at 176.583 kb on - strand, within MPMX19_06023at 176.583 kb on - strand, within MPMX19_06023at 176.583 kb on - strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 177.272 kb on + strand, within MPMX19_06023at 177.272 kb on + strand, within MPMX19_06023at 177.809 kb on + strandat 177.809 kb on + strandat 177.809 kb on + strandat 177.809 kb on + strandat 177.809 kb on + strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.821 kb on + strandat 177.821 kb on + strandat 177.821 kb on - strandat 177.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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176,580 + MPMX19_06023 0.15 +0.0
176,580 + MPMX19_06023 0.15 +0.0
176,580 + MPMX19_06023 0.15 -1.6
176,580 + MPMX19_06023 0.15 -1.4
176,580 + MPMX19_06023 0.15 -0.1
176,580 + MPMX19_06023 0.15 +0.2
176,580 + MPMX19_06023 0.15 +1.4
176,581 - MPMX19_06023 0.15 -1.2
176,581 - MPMX19_06023 0.15 +1.0
176,581 - MPMX19_06023 0.15 +0.0
176,581 - MPMX19_06023 0.15 +0.2
176,581 - MPMX19_06023 0.15 +0.0
176,581 - MPMX19_06023 0.15 -2.2
176,581 - MPMX19_06023 0.15 +1.6
176,581 - MPMX19_06023 0.15 -0.3
176,581 - MPMX19_06023 0.15 -0.5
176,581 - MPMX19_06023 0.15 +0.8
176,582 + MPMX19_06023 0.15 -1.1
176,582 + MPMX19_06023 0.15 -1.6
176,583 - MPMX19_06023 0.15 -0.6
176,583 - MPMX19_06023 0.15 -1.7
176,583 - MPMX19_06023 0.15 -1.1
176,610 + MPMX19_06023 0.18 +0.3
176,610 + MPMX19_06023 0.18 +1.0
176,610 + MPMX19_06023 0.18 +0.5
176,610 + MPMX19_06023 0.18 -1.2
176,610 + MPMX19_06023 0.18 +0.0
176,610 + MPMX19_06023 0.18 -0.6
176,610 + MPMX19_06023 0.18 +0.6
176,610 + MPMX19_06023 0.18 -1.2
176,610 + MPMX19_06023 0.18 -0.1
176,610 + MPMX19_06023 0.18 -1.5
176,610 + MPMX19_06023 0.18 -0.2
176,610 + MPMX19_06023 0.18 +0.2
176,610 + MPMX19_06023 0.18 -2.0
176,610 + MPMX19_06023 0.18 -0.2
176,610 + MPMX19_06023 0.18 +0.4
176,611 - MPMX19_06023 0.18 -0.2
176,611 - MPMX19_06023 0.18 -0.6
176,611 - MPMX19_06023 0.18 +1.0
176,611 - MPMX19_06023 0.18 -0.7
176,611 - MPMX19_06023 0.18 -1.0
176,611 - MPMX19_06023 0.18 -0.4
176,611 - MPMX19_06023 0.18 +0.0
176,611 - MPMX19_06023 0.18 -1.6
176,611 - MPMX19_06023 0.18 +1.8
176,611 - MPMX19_06023 0.18 -0.7
176,611 - MPMX19_06023 0.18 +0.7
176,611 - MPMX19_06023 0.18 -0.4
176,611 - MPMX19_06023 0.18 -0.3
176,611 - MPMX19_06023 0.18 +0.2
176,727 + MPMX19_06023 0.29 -0.2
176,727 + MPMX19_06023 0.29 +0.2
176,727 + MPMX19_06023 0.29 -1.1
176,727 + MPMX19_06023 0.29 -0.4
176,727 + MPMX19_06023 0.29 -0.6
176,727 + MPMX19_06023 0.29 -0.4
176,727 + MPMX19_06023 0.29 -1.0
176,727 + MPMX19_06023 0.29 +0.3
176,727 + MPMX19_06023 0.29 +0.9
176,727 + MPMX19_06023 0.29 +0.5
176,727 + MPMX19_06023 0.29 +0.9
176,727 + MPMX19_06023 0.29 +0.4
176,728 - MPMX19_06023 0.29 -0.5
176,728 - MPMX19_06023 0.29 +0.6
176,728 - MPMX19_06023 0.29 -1.7
176,728 - MPMX19_06023 0.29 +0.8
176,728 - MPMX19_06023 0.29 -1.2
176,728 - MPMX19_06023 0.29 -0.1
176,728 - MPMX19_06023 0.29 +0.7
176,728 - MPMX19_06023 0.29 -1.3
176,728 - MPMX19_06023 0.29 -0.7
176,728 - MPMX19_06023 0.29 +0.8
176,728 - MPMX19_06023 0.29 -0.4
177,272 + MPMX19_06023 0.79 +0.2
177,272 + MPMX19_06023 0.79 -1.8
177,809 + +0.0
177,809 + +0.3
177,809 + -1.0
177,809 + -1.5
177,809 + -1.0
177,810 - -0.9
177,810 - +0.5
177,810 - +0.6
177,810 - -0.5
177,810 - -0.2
177,810 - -0.1
177,810 - -0.9
177,810 - -0.8
177,810 - +0.3
177,821 + -0.3
177,821 + -1.0
177,821 - +0.6
177,822 - -1.1

Or see this region's nucleotide sequence