Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06017 and MPMX19_06018 are separated by 28 nucleotides MPMX19_06018 and MPMX19_06019 are separated by 241 nucleotides MPMX19_06019 and MPMX19_06020 are separated by 281 nucleotides
MPMX19_06017: MPMX19_06017 - hypothetical protein, at 170,452 to 171,081
_06017
MPMX19_06018: MPMX19_06018 - hypothetical protein, at 171,110 to 171,673
_06018
MPMX19_06019: MPMX19_06019 - Peptide methionine sulfoxide reductase MsrB, at 171,915 to 172,331
_06019
MPMX19_06020: MPMX19_06020 - hypothetical protein, at 172,613 to 173,806
_06020
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.261 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.541 kb on - strand, within MPMX19_06018 at 171.785 kb on + strand at 171.785 kb on + strand at 171.785 kb on + strand at 171.785 kb on + strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.828 kb on - strand at 171.858 kb on + strand at 171.859 kb on - strand at 171.859 kb on - strand at 171.859 kb on - strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 172.054 kb on + strand, within MPMX19_06019 at 172.054 kb on + strand, within MPMX19_06019 at 172.055 kb on - strand, within MPMX19_06019 at 172.066 kb on + strand, within MPMX19_06019 at 172.066 kb on + strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.135 kb on + strand, within MPMX19_06019 at 172.135 kb on + strand, within MPMX19_06019 at 172.135 kb on + strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.184 kb on - strand, within MPMX19_06019 at 172.229 kb on - strand, within MPMX19_06019 at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.397 kb on - strand at 172.448 kb on + strand at 172.449 kb on - strand at 172.473 kb on + strand at 172.473 kb on + strand at 172.473 kb on + strand at 172.474 kb on - strand at 172.628 kb on + strand at 172.629 kb on - strand at 172.629 kb on - strand at 172.721 kb on + strand at 172.721 kb on + strand at 172.722 kb on - strand at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.836 kb on - strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.003 kb on - strand, within MPMX19_06020 at 173.003 kb on - strand, within MPMX19_06020 at 173.233 kb on + strand, within MPMX19_06020 at 173.233 kb on + strand, within MPMX19_06020
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 170,918 + MPMX19_06017 0.74 +0.8 170,918 + MPMX19_06017 0.74 -0.7 170,918 + MPMX19_06017 0.74 +0.5 170,919 - MPMX19_06017 0.74 -1.8 170,919 - MPMX19_06017 0.74 -0.2 170,919 - MPMX19_06017 0.74 -0.6 171,018 - MPMX19_06017 0.90 -0.6 171,018 - MPMX19_06017 0.90 +0.0 171,062 + -0.7 171,062 + +0.0 171,062 + -0.4 171,062 + +0.9 171,063 - -1.7 171,063 - -0.6 171,063 - +0.5 171,063 - -0.3 171,063 - +0.0 171,063 - +1.4 171,063 - -1.4 171,100 + -0.3 171,100 + -2.0 171,100 + -0.4 171,100 + -0.6 171,100 + +0.6 171,100 + +0.6 171,100 + -0.9 171,100 + -0.8 171,100 + -0.4 171,100 + -0.8 171,100 + +2.3 171,100 + -0.2 171,100 + -0.3 171,100 + +1.0 171,100 + -0.6 171,101 - -1.2 171,101 - -1.2 171,101 - -1.7 171,101 - -0.4 171,101 - -0.2 171,101 - -1.1 171,101 - -0.2 171,101 - -0.0 171,101 - -0.2 171,101 - -0.6 171,261 + MPMX19_06018 0.27 +0.2 171,342 + MPMX19_06018 0.41 -1.4 171,342 + MPMX19_06018 0.41 -1.6 171,342 + MPMX19_06018 0.41 +0.3 171,342 + MPMX19_06018 0.41 +0.6 171,342 + MPMX19_06018 0.41 +0.6 171,342 + MPMX19_06018 0.41 -1.0 171,342 + MPMX19_06018 0.41 -1.4 171,342 + MPMX19_06018 0.41 -2.1 171,342 + MPMX19_06018 0.41 -2.0 171,342 + MPMX19_06018 0.41 -0.3 171,342 + MPMX19_06018 0.41 -1.3 171,342 + MPMX19_06018 0.41 -1.0 171,343 - MPMX19_06018 0.41 -0.4 171,343 - MPMX19_06018 0.41 -0.8 171,343 - MPMX19_06018 0.41 -0.7 171,343 - MPMX19_06018 0.41 -0.3 171,343 - MPMX19_06018 0.41 -0.2 171,343 - MPMX19_06018 0.41 -2.2 171,343 - MPMX19_06018 0.41 +0.8 171,343 - MPMX19_06018 0.41 -2.1 171,343 - MPMX19_06018 0.41 -0.7 171,343 - MPMX19_06018 0.41 +0.2 171,343 - MPMX19_06018 0.41 -0.2 171,343 - MPMX19_06018 0.41 +0.6 171,343 - MPMX19_06018 0.41 -0.6 171,343 - MPMX19_06018 0.41 +0.2 171,540 + MPMX19_06018 0.76 -1.4 171,540 + MPMX19_06018 0.76 -1.5 171,540 + MPMX19_06018 0.76 -1.2 171,541 - MPMX19_06018 0.76 +0.0 171,785 + -0.6 171,785 + +0.4 171,785 + -0.4 171,785 + +0.6 171,786 - +0.8 171,786 - -0.7 171,786 - -0.5 171,786 - -1.8 171,786 - -2.1 171,786 - -0.2 171,828 - +0.2 171,858 + -0.7 171,859 - +1.1 171,859 - +0.6 171,859 - -2.8 171,903 + -1.3 171,903 + +1.2 171,903 + +0.4 171,903 + +1.2 171,903 + -0.1 171,903 + -0.1 171,903 + -1.1 171,903 + -1.3 171,904 - -0.7 171,904 - +0.1 171,904 - +0.0 171,904 - -0.7 171,904 - -1.2 171,904 - +0.8 171,904 - -1.2 171,904 - -0.9 171,904 - -1.3 171,904 - +1.4 171,967 + MPMX19_06019 0.12 -1.7 171,967 + MPMX19_06019 0.12 -0.6 171,967 + MPMX19_06019 0.12 +0.1 171,967 + MPMX19_06019 0.12 +0.6 171,968 - MPMX19_06019 0.13 -1.4 171,968 - MPMX19_06019 0.13 +0.6 171,968 - MPMX19_06019 0.13 +1.8 172,054 + MPMX19_06019 0.33 -0.6 172,054 + MPMX19_06019 0.33 +1.0 172,055 - MPMX19_06019 0.34 +0.0 172,066 + MPMX19_06019 0.36 -1.3 172,066 + MPMX19_06019 0.36 -0.8 172,067 - MPMX19_06019 0.36 -0.1 172,067 - MPMX19_06019 0.36 +0.2 172,067 - MPMX19_06019 0.36 -0.3 172,067 - MPMX19_06019 0.36 -0.2 172,067 - MPMX19_06019 0.36 -0.7 172,135 + MPMX19_06019 0.53 -2.0 172,135 + MPMX19_06019 0.53 -1.2 172,135 + MPMX19_06019 0.53 +0.6 172,136 - MPMX19_06019 0.53 -0.2 172,136 - MPMX19_06019 0.53 +1.0 172,136 - MPMX19_06019 0.53 -1.0 172,136 - MPMX19_06019 0.53 -0.2 172,136 - MPMX19_06019 0.53 +0.3 172,153 + MPMX19_06019 0.57 +0.4 172,153 + MPMX19_06019 0.57 +0.1 172,153 + MPMX19_06019 0.57 -1.8 172,153 + MPMX19_06019 0.57 +0.6 172,154 - MPMX19_06019 0.57 -0.2 172,154 - MPMX19_06019 0.57 -0.3 172,154 - MPMX19_06019 0.57 -0.4 172,154 - MPMX19_06019 0.57 +0.6 172,184 - MPMX19_06019 0.65 -0.1 172,229 - MPMX19_06019 0.75 +0.0 172,374 + -0.1 172,374 + +0.0 172,374 + -1.6 172,374 + -0.6 172,374 + +0.9 172,374 + -2.1 172,374 + -0.4 172,374 + -0.3 172,374 + -0.8 172,374 + +1.6 172,374 + +0.8 172,374 + +0.0 172,374 + -0.4 172,374 + -1.0 172,374 + +0.1 172,374 + -0.3 172,374 + -0.8 172,374 + +1.3 172,374 + -0.8 172,374 + -1.0 172,374 + -0.7 172,374 + -0.1 172,374 + +0.8 172,374 + -2.3 172,375 - -1.6 172,375 - -2.2 172,375 - +0.2 172,375 - +0.6 172,375 - -0.4 172,375 - -0.7 172,375 - +1.2 172,375 - -0.0 172,375 - +0.3 172,375 - +0.8 172,375 - +0.1 172,375 - +0.4 172,376 + -0.5 172,376 + +0.0 172,376 + +0.4 172,376 + -0.7 172,376 + +1.6 172,376 + -0.6 172,376 + +0.0 172,376 + -0.9 172,377 - -1.8 172,377 - +0.2 172,377 - -0.6 172,377 - -0.3 172,377 - +0.3 172,377 - +0.5 172,377 - +0.2 172,377 - -0.6 172,377 - +1.6 172,377 - -1.2 172,397 - -0.5 172,448 + -0.3 172,449 - +0.4 172,473 + +0.4 172,473 + +1.0 172,473 + +0.8 172,474 - -0.8 172,628 + +2.0 172,629 - +0.8 172,629 - +0.6 172,721 + -0.8 172,721 + +0.6 172,722 - +0.9 172,835 + MPMX19_06020 0.19 -1.3 172,835 + MPMX19_06020 0.19 -1.8 172,835 + MPMX19_06020 0.19 -0.4 172,835 + MPMX19_06020 0.19 +0.4 172,835 + MPMX19_06020 0.19 +0.6 172,835 + MPMX19_06020 0.19 -0.9 172,836 - MPMX19_06020 0.19 -0.8 173,002 + MPMX19_06020 0.33 +0.6 173,002 + MPMX19_06020 0.33 -2.0 173,002 + MPMX19_06020 0.33 -0.1 173,002 + MPMX19_06020 0.33 -0.6 173,003 - MPMX19_06020 0.33 +0.4 173,003 - MPMX19_06020 0.33 -0.1 173,233 + MPMX19_06020 0.52 -0.9 173,233 + MPMX19_06020 0.52 -0.7
Or see this region's nucleotide sequence