Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05831 and MPMX19_05832 are separated by 252 nucleotides MPMX19_05832 and MPMX19_05833 are separated by 53 nucleotides
MPMX19_05831: MPMX19_05831 - Protein/nucleic acid deglycase 2, at 561,488 to 562,051
_05831
MPMX19_05832: MPMX19_05832 - hypothetical protein, at 562,304 to 564,001
_05832
MPMX19_05833: MPMX19_05833 - Cyclohexadienyl dehydrogenase, at 564,055 to 564,969
_05833
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.458 kb on - strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.577 kb on + strand, within MPMX19_05831 at 561.577 kb on + strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.890 kb on + strand, within MPMX19_05831 at 562.128 kb on + strand at 562.128 kb on + strand at 562.128 kb on + strand at 562.209 kb on + strand at 562.209 kb on + strand at 562.228 kb on + strand at 562.231 kb on + strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.624 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.689 kb on - strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 564.000 kb on - strand at 564.000 kb on - strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 561,457 + -0.3 561,457 + -0.5 561,457 + -1.4 561,457 + -0.1 561,457 + -0.2 561,457 + -2.1 561,458 - -0.3 561,487 + -1.0 561,487 + +0.0 561,487 + +0.0 561,488 - +1.6 561,488 - +1.2 561,488 - +0.6 561,488 - -0.1 561,488 - -2.0 561,488 - -1.0 561,488 - +1.3 561,577 + MPMX19_05831 0.16 -0.4 561,577 + MPMX19_05831 0.16 +0.2 561,578 - MPMX19_05831 0.16 +0.8 561,578 - MPMX19_05831 0.16 -1.6 561,659 + MPMX19_05831 0.30 +1.0 561,659 + MPMX19_05831 0.30 -0.2 561,659 + MPMX19_05831 0.30 -1.7 561,659 + MPMX19_05831 0.30 -1.9 561,659 + MPMX19_05831 0.30 +0.2 561,659 + MPMX19_05831 0.30 -0.4 561,659 + MPMX19_05831 0.30 -0.9 561,659 + MPMX19_05831 0.30 +0.4 561,660 - MPMX19_05831 0.30 -1.0 561,660 - MPMX19_05831 0.30 -0.6 561,660 - MPMX19_05831 0.30 -1.4 561,890 + MPMX19_05831 0.71 -2.1 562,128 + -1.0 562,128 + -0.2 562,128 + -0.1 562,209 + -1.0 562,209 + +0.6 562,228 + +0.4 562,231 + -1.3 562,232 - -0.9 562,232 - -0.2 562,232 - -1.0 562,249 - +0.1 562,249 - -0.5 562,249 - -1.7 562,529 + MPMX19_05832 0.13 +0.4 562,529 + MPMX19_05832 0.13 -1.3 562,529 + MPMX19_05832 0.13 +1.3 562,529 + MPMX19_05832 0.13 -1.2 562,530 - MPMX19_05832 0.13 -2.0 562,530 - MPMX19_05832 0.13 -3.2 562,530 - MPMX19_05832 0.13 -1.3 562,624 + MPMX19_05832 0.19 -0.2 562,688 + MPMX19_05832 0.23 -0.1 562,688 + MPMX19_05832 0.23 -0.9 562,688 + MPMX19_05832 0.23 -1.4 562,689 - MPMX19_05832 0.23 +0.7 562,868 + MPMX19_05832 0.33 -0.1 562,868 + MPMX19_05832 0.33 -1.2 562,868 + MPMX19_05832 0.33 -0.5 562,868 + MPMX19_05832 0.33 +0.2 562,868 + MPMX19_05832 0.33 -1.2 562,869 - MPMX19_05832 0.33 -1.3 562,869 - MPMX19_05832 0.33 -1.1 562,869 - MPMX19_05832 0.33 -1.0 562,869 - MPMX19_05832 0.33 -0.9 562,869 - MPMX19_05832 0.33 -1.4 563,999 + -0.3 563,999 + -0.6 563,999 + -0.2 563,999 + -0.2 563,999 + +0.1 564,000 - -1.4 564,000 - -0.1 564,056 + -1.2 564,056 + -0.2 564,056 + +1.4 564,056 + +0.5 564,056 + +0.3 564,056 + +0.3 564,056 + -1.3 564,056 + -0.4 564,056 + -0.2 564,057 - +0.9 564,057 - -0.6 564,057 - -0.2 564,057 - +0.7 564,057 - -0.2
Or see this region's nucleotide sequence