Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05711

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05710 and MPMX19_05711 are separated by 269 nucleotidesMPMX19_05711 and MPMX19_05712 are separated by 2 nucleotides MPMX19_05710: MPMX19_05710 - Uric acid transporter UacT, at 429,591 to 430,955 _05710 MPMX19_05711: MPMX19_05711 - hypothetical protein, at 431,225 to 431,563 _05711 MPMX19_05712: MPMX19_05712 - Beta-glucosidase A, at 431,566 to 432,912 _05712 Position (kb) 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.621 kb on + strand, within MPMX19_05710at 430.622 kb on - strand, within MPMX19_05710at 430.622 kb on - strand, within MPMX19_05710at 430.622 kb on - strand, within MPMX19_05710at 430.622 kb on - strand, within MPMX19_05710at 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.858 kb on + strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 430.859 kb on - strandat 431.089 kb on + strandat 431.089 kb on + strandat 431.089 kb on + strandat 431.089 kb on + strandat 431.090 kb on - strandat 431.114 kb on + strandat 431.154 kb on + strandat 431.154 kb on + strandat 431.155 kb on - strandat 431.155 kb on - strandat 431.155 kb on - strandat 431.155 kb on - strandat 431.162 kb on - strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.175 kb on + strandat 431.176 kb on - strandat 431.176 kb on - strandat 431.176 kb on - strandat 431.176 kb on - strandat 431.176 kb on - strandat 431.176 kb on - strandat 431.176 kb on - strandat 431.247 kb on + strandat 431.247 kb on + strandat 431.247 kb on + strandat 431.247 kb on + strandat 431.248 kb on - strandat 431.248 kb on - strandat 431.248 kb on - strandat 431.300 kb on + strand, within MPMX19_05711at 431.300 kb on + strand, within MPMX19_05711at 431.300 kb on + strand, within MPMX19_05711at 431.301 kb on - strand, within MPMX19_05711at 431.301 kb on - strand, within MPMX19_05711at 431.301 kb on - strand, within MPMX19_05711at 431.301 kb on - strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.390 kb on + strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.391 kb on - strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.489 kb on + strand, within MPMX19_05711at 431.490 kb on - strand, within MPMX19_05711at 431.490 kb on - strand, within MPMX19_05711at 431.490 kb on - strand, within MPMX19_05711at 431.490 kb on - strand, within MPMX19_05711at 431.490 kb on - strand, within MPMX19_05711at 431.490 kb on - strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.492 kb on + strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.493 kb on - strand, within MPMX19_05711at 431.641 kb on + strandat 431.641 kb on + strandat 431.641 kb on + strandat 431.642 kb on - strandat 431.642 kb on - strandat 431.758 kb on + strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.759 kb on - strand, within MPMX19_05712at 431.812 kb on + strand, within MPMX19_05712at 431.813 kb on - strand, within MPMX19_05712at 431.813 kb on - strand, within MPMX19_05712at 431.813 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.888 kb on - strand, within MPMX19_05712at 431.944 kb on + strand, within MPMX19_05712at 431.944 kb on + strand, within MPMX19_05712at 431.944 kb on + strand, within MPMX19_05712at 431.944 kb on + strand, within MPMX19_05712at 431.944 kb on + strand, within MPMX19_05712at 431.944 kb on + strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 431.945 kb on - strand, within MPMX19_05712at 432.013 kb on + strand, within MPMX19_05712at 432.014 kb on - strand, within MPMX19_05712at 432.022 kb on + strand, within MPMX19_05712at 432.022 kb on + strand, within MPMX19_05712at 432.022 kb on + strand, within MPMX19_05712at 432.023 kb on - strand, within MPMX19_05712at 432.023 kb on - strand, within MPMX19_05712at 432.023 kb on - strand, within MPMX19_05712at 432.023 kb on - strand, within MPMX19_05712at 432.047 kb on - strand, within MPMX19_05712at 432.362 kb on - strand, within MPMX19_05712at 432.502 kb on + strand, within MPMX19_05712at 432.502 kb on + strand, within MPMX19_05712at 432.502 kb on + strand, within MPMX19_05712at 432.503 kb on - strand, within MPMX19_05712at 432.503 kb on - strand, within MPMX19_05712

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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430,621 + MPMX19_05710 0.75 -0.7
430,621 + MPMX19_05710 0.75 -0.6
430,621 + MPMX19_05710 0.75 -1.4
430,621 + MPMX19_05710 0.75 -0.5
430,621 + MPMX19_05710 0.75 +0.8
430,621 + MPMX19_05710 0.75 -2.1
430,621 + MPMX19_05710 0.75 -0.2
430,621 + MPMX19_05710 0.75 -0.4
430,621 + MPMX19_05710 0.75 +0.3
430,622 - MPMX19_05710 0.76 -0.9
430,622 - MPMX19_05710 0.76 +0.1
430,622 - MPMX19_05710 0.76 +0.0
430,622 - MPMX19_05710 0.76 -0.2
430,858 + -1.1
430,858 + -1.0
430,858 + -0.2
430,858 + -1.4
430,858 + +0.1
430,858 + -0.9
430,858 + -1.9
430,858 + -0.2
430,858 + +0.5
430,858 + -1.6
430,858 + +0.1
430,858 + +0.3
430,858 + -1.4
430,858 + -2.5
430,858 + +0.0
430,858 + +0.6
430,858 + -0.1
430,858 + -0.2
430,858 + -0.7
430,858 + +0.7
430,858 + -0.4
430,858 + -1.0
430,858 + +0.2
430,858 + -0.2
430,858 + +0.1
430,859 - -1.7
430,859 - -2.7
430,859 - -1.5
430,859 - -0.2
430,859 - +0.9
430,859 - -0.7
430,859 - +1.0
430,859 - +0.8
430,859 - -1.9
430,859 - +0.6
430,859 - -0.6
430,859 - +0.1
430,859 - +0.1
430,859 - -0.7
430,859 - +0.6
430,859 - +0.8
430,859 - +1.6
430,859 - +0.5
430,859 - -0.3
430,859 - -1.2
430,859 - -0.2
430,859 - -3.1
430,859 - +0.0
430,859 - -1.0
430,859 - +0.0
430,859 - -1.9
431,089 + -0.1
431,089 + -0.7
431,089 + -1.7
431,089 + -0.3
431,090 - +0.0
431,114 + +0.5
431,154 + -0.8
431,154 + -1.2
431,155 - +0.3
431,155 - +0.6
431,155 - -1.3
431,155 - +0.2
431,162 - -0.8
431,175 + -1.4
431,175 + -0.2
431,175 + -1.1
431,175 + -0.4
431,175 + +0.3
431,175 + +0.7
431,175 + -1.1
431,175 + -1.4
431,176 - -0.6
431,176 - -0.3
431,176 - -2.2
431,176 - -0.5
431,176 - -0.2
431,176 - -0.8
431,176 - -0.9
431,247 + +0.6
431,247 + +0.0
431,247 + -1.1
431,247 + -2.4
431,248 - +0.0
431,248 - -1.2
431,248 - -0.4
431,300 + MPMX19_05711 0.22 +1.8
431,300 + MPMX19_05711 0.22 +0.6
431,300 + MPMX19_05711 0.22 +0.1
431,301 - MPMX19_05711 0.22 +1.6
431,301 - MPMX19_05711 0.22 +0.0
431,301 - MPMX19_05711 0.22 -0.3
431,301 - MPMX19_05711 0.22 -0.5
431,390 + MPMX19_05711 0.49 +0.2
431,390 + MPMX19_05711 0.49 -0.2
431,390 + MPMX19_05711 0.49 +1.4
431,390 + MPMX19_05711 0.49 -1.1
431,390 + MPMX19_05711 0.49 -0.4
431,390 + MPMX19_05711 0.49 -1.0
431,390 + MPMX19_05711 0.49 -1.7
431,390 + MPMX19_05711 0.49 +0.1
431,390 + MPMX19_05711 0.49 +0.7
431,390 + MPMX19_05711 0.49 +0.3
431,390 + MPMX19_05711 0.49 +0.6
431,390 + MPMX19_05711 0.49 -0.9
431,391 - MPMX19_05711 0.49 +1.2
431,391 - MPMX19_05711 0.49 +1.9
431,391 - MPMX19_05711 0.49 +0.0
431,391 - MPMX19_05711 0.49 +0.6
431,391 - MPMX19_05711 0.49 -0.3
431,391 - MPMX19_05711 0.49 -1.0
431,391 - MPMX19_05711 0.49 -0.9
431,391 - MPMX19_05711 0.49 -0.3
431,391 - MPMX19_05711 0.49 +1.1
431,391 - MPMX19_05711 0.49 -1.9
431,391 - MPMX19_05711 0.49 +0.4
431,391 - MPMX19_05711 0.49 +0.1
431,489 + MPMX19_05711 0.78 -1.3
431,489 + MPMX19_05711 0.78 -2.3
431,489 + MPMX19_05711 0.78 -0.7
431,489 + MPMX19_05711 0.78 -0.5
431,489 + MPMX19_05711 0.78 -1.7
431,489 + MPMX19_05711 0.78 +0.0
431,489 + MPMX19_05711 0.78 +0.1
431,490 - MPMX19_05711 0.78 -0.3
431,490 - MPMX19_05711 0.78 -0.6
431,490 - MPMX19_05711 0.78 -0.7
431,490 - MPMX19_05711 0.78 +0.0
431,490 - MPMX19_05711 0.78 -0.2
431,490 - MPMX19_05711 0.78 +0.6
431,492 + MPMX19_05711 0.79 -0.4
431,492 + MPMX19_05711 0.79 +0.0
431,492 + MPMX19_05711 0.79 -1.6
431,492 + MPMX19_05711 0.79 -0.1
431,492 + MPMX19_05711 0.79 -0.9
431,492 + MPMX19_05711 0.79 +1.4
431,492 + MPMX19_05711 0.79 -0.2
431,492 + MPMX19_05711 0.79 +0.1
431,492 + MPMX19_05711 0.79 -0.1
431,493 - MPMX19_05711 0.79 +0.4
431,493 - MPMX19_05711 0.79 -1.1
431,493 - MPMX19_05711 0.79 -0.1
431,493 - MPMX19_05711 0.79 -0.6
431,493 - MPMX19_05711 0.79 -1.0
431,493 - MPMX19_05711 0.79 +0.1
431,493 - MPMX19_05711 0.79 -0.3
431,493 - MPMX19_05711 0.79 +0.8
431,493 - MPMX19_05711 0.79 -0.3
431,493 - MPMX19_05711 0.79 -0.8
431,493 - MPMX19_05711 0.79 +1.0
431,493 - MPMX19_05711 0.79 +0.6
431,493 - MPMX19_05711 0.79 +0.3
431,493 - MPMX19_05711 0.79 -0.6
431,493 - MPMX19_05711 0.79 -0.9
431,493 - MPMX19_05711 0.79 +1.8
431,493 - MPMX19_05711 0.79 -0.2
431,493 - MPMX19_05711 0.79 -2.1
431,641 + -0.5
431,641 + -0.8
431,641 + -1.3
431,642 - +0.3
431,642 - +0.1
431,758 + MPMX19_05712 0.14 -1.2
431,759 - MPMX19_05712 0.14 +1.6
431,759 - MPMX19_05712 0.14 -0.2
431,759 - MPMX19_05712 0.14 -0.9
431,759 - MPMX19_05712 0.14 +0.6
431,759 - MPMX19_05712 0.14 -0.7
431,759 - MPMX19_05712 0.14 -0.3
431,759 - MPMX19_05712 0.14 +0.4
431,812 + MPMX19_05712 0.18 -0.6
431,813 - MPMX19_05712 0.18 +0.2
431,813 - MPMX19_05712 0.18 +1.1
431,813 - MPMX19_05712 0.18 -0.4
431,888 - MPMX19_05712 0.24 +0.6
431,888 - MPMX19_05712 0.24 -0.1
431,888 - MPMX19_05712 0.24 +1.4
431,888 - MPMX19_05712 0.24 -0.1
431,888 - MPMX19_05712 0.24 +0.0
431,888 - MPMX19_05712 0.24 -1.2
431,888 - MPMX19_05712 0.24 -0.2
431,944 + MPMX19_05712 0.28 -0.6
431,944 + MPMX19_05712 0.28 -0.6
431,944 + MPMX19_05712 0.28 -1.0
431,944 + MPMX19_05712 0.28 +0.2
431,944 + MPMX19_05712 0.28 +0.4
431,944 + MPMX19_05712 0.28 -0.3
431,945 - MPMX19_05712 0.28 -0.2
431,945 - MPMX19_05712 0.28 +0.4
431,945 - MPMX19_05712 0.28 +0.1
431,945 - MPMX19_05712 0.28 +0.7
431,945 - MPMX19_05712 0.28 +0.4
431,945 - MPMX19_05712 0.28 +0.8
431,945 - MPMX19_05712 0.28 +0.0
431,945 - MPMX19_05712 0.28 -1.2
432,013 + MPMX19_05712 0.33 +0.6
432,014 - MPMX19_05712 0.33 -1.1
432,022 + MPMX19_05712 0.34 -1.7
432,022 + MPMX19_05712 0.34 -0.4
432,022 + MPMX19_05712 0.34 +0.4
432,023 - MPMX19_05712 0.34 +1.6
432,023 - MPMX19_05712 0.34 +1.9
432,023 - MPMX19_05712 0.34 +0.0
432,023 - MPMX19_05712 0.34 -0.6
432,047 - MPMX19_05712 0.36 -0.2
432,362 - MPMX19_05712 0.59 -0.4
432,502 + MPMX19_05712 0.69 -0.2
432,502 + MPMX19_05712 0.69 -0.4
432,502 + MPMX19_05712 0.69 +0.4
432,503 - MPMX19_05712 0.70 +0.5
432,503 - MPMX19_05712 0.70 +0.4

Or see this region's nucleotide sequence