Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05550 and MPMX19_05551 are separated by 183 nucleotides MPMX19_05551 and MPMX19_05552 are separated by 10 nucleotides MPMX19_05552 and MPMX19_05553 are separated by 40 nucleotides
MPMX19_05550: MPMX19_05550 - Photosystem I assembly protein Ycf3, at 255,418 to 259,158
_05550
MPMX19_05551: MPMX19_05551 - Chemotaxis protein CheY, at 259,342 to 259,737
_05551
MPMX19_05552: MPMX19_05552 - hypothetical protein, at 259,748 to 260,380
_05552
MPMX19_05553: MPMX19_05553 - hypothetical protein, at 260,421 to 262,397
_05553
Position (kb) 259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.440 kb on + strand, within MPMX19_05550 at 258.440 kb on + strand, within MPMX19_05550 at 258.440 kb on + strand, within MPMX19_05550 at 258.440 kb on + strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.666 kb on - strand, within MPMX19_05550 at 258.666 kb on - strand, within MPMX19_05550 at 258.716 kb on + strand, within MPMX19_05550 at 258.717 kb on - strand, within MPMX19_05550 at 258.747 kb on - strand, within MPMX19_05550 at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.848 kb on + strand at 258.849 kb on - strand at 258.849 kb on - strand at 258.849 kb on - strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.198 kb on - strand at 259.244 kb on + strand at 259.244 kb on + strand at 259.245 kb on - strand at 259.245 kb on - strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.276 kb on - strand at 259.276 kb on - strand at 259.277 kb on + strand at 259.277 kb on + strand at 259.277 kb on + strand at 259.277 kb on + strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.339 kb on - strand at 259.359 kb on + strand at 259.359 kb on + strand at 259.360 kb on - strand at 259.360 kb on - strand at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.359 kb on + strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 258,440 + MPMX19_05550 0.81 +1.1 258,440 + MPMX19_05550 0.81 -0.1 258,440 + MPMX19_05550 0.81 +0.1 258,440 + MPMX19_05550 0.81 +1.0 258,441 - MPMX19_05550 0.81 +0.1 258,441 - MPMX19_05550 0.81 -0.7 258,441 - MPMX19_05550 0.81 -1.9 258,441 - MPMX19_05550 0.81 +1.0 258,665 + MPMX19_05550 0.87 +0.5 258,665 + MPMX19_05550 0.87 +1.6 258,665 + MPMX19_05550 0.87 -1.3 258,665 + MPMX19_05550 0.87 -1.8 258,665 + MPMX19_05550 0.87 -0.8 258,665 + MPMX19_05550 0.87 -1.3 258,665 + MPMX19_05550 0.87 -0.6 258,665 + MPMX19_05550 0.87 -0.2 258,665 + MPMX19_05550 0.87 -0.5 258,665 + MPMX19_05550 0.87 -0.1 258,666 - MPMX19_05550 0.87 +0.6 258,666 - MPMX19_05550 0.87 -2.5 258,716 + MPMX19_05550 0.88 -1.2 258,717 - MPMX19_05550 0.88 -0.4 258,747 - MPMX19_05550 0.89 +1.0 258,818 + -0.3 258,818 + -1.2 258,818 + -0.5 258,818 + +1.9 258,818 + -0.3 258,818 + +0.6 258,818 + -0.1 258,818 + -0.6 258,818 + -0.3 258,819 - -1.0 258,819 - -0.3 258,819 - +0.6 258,819 - -0.2 258,819 - +0.1 258,819 - -1.6 258,848 + +0.7 258,849 - -1.3 258,849 - -1.1 258,849 - -1.7 259,052 + -0.7 259,052 + -0.1 259,052 + -0.7 259,052 + +0.0 259,052 + -1.7 259,052 + +0.1 259,053 - -0.8 259,053 - -1.0 259,053 - +1.3 259,053 - -1.0 259,053 - -0.3 259,053 - +1.6 259,053 - -1.0 259,053 - -0.5 259,198 - +0.3 259,244 + -0.4 259,244 + -0.1 259,245 - -0.5 259,245 - +1.2 259,275 + +0.1 259,275 + -1.0 259,275 + +0.2 259,275 + -2.1 259,275 + -2.2 259,276 - -0.2 259,276 - +0.4 259,277 + -1.1 259,277 + -0.9 259,277 + -2.2 259,277 + +0.1 259,278 - -0.4 259,278 - -0.2 259,278 - -2.1 259,278 - -0.3 259,278 - +0.4 259,278 - +0.0 259,278 - +0.4 259,278 - -0.2 259,278 - +0.3 259,339 - -1.8 259,359 + -1.4 259,359 + -0.4 259,360 - +0.0 259,360 - -0.2 259,508 - MPMX19_05551 0.42 -0.4 259,508 - MPMX19_05551 0.42 -0.7 259,508 - MPMX19_05551 0.42 +0.3 259,508 - MPMX19_05551 0.42 +1.3 260,357 + -1.1 260,357 + -0.7 260,357 + -0.1 260,357 + +0.6 260,358 - -0.2 260,358 - -2.0 260,358 - -1.0 260,358 - +0.0 260,358 - -0.4 260,358 - +1.0 260,358 - +0.4 260,358 - +0.4 260,358 - +0.9 260,358 - +0.6 260,358 - +0.6 260,359 + -0.6 260,360 - +0.2 260,360 - +0.3 260,360 - +1.3 260,414 - -0.9
Or see this region's nucleotide sequence