Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04776

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04775 and MPMX19_04776 overlap by 4 nucleotidesMPMX19_04776 and MPMX19_04777 are separated by 105 nucleotides MPMX19_04775: MPMX19_04775 - hypothetical protein, at 167,170 to 169,359 _04775 MPMX19_04776: MPMX19_04776 - Spermidine/putrescine import ATP-binding protein PotA, at 169,356 to 170,435 _04776 MPMX19_04777: MPMX19_04777 - Sensor histidine kinase RcsC, at 170,541 to 173,276 _04777 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.461 kb on - strand, within MPMX19_04775at 168.461 kb on - strand, within MPMX19_04775at 168.532 kb on + strand, within MPMX19_04775at 168.532 kb on + strand, within MPMX19_04775at 168.532 kb on + strand, within MPMX19_04775at 168.533 kb on - strand, within MPMX19_04775at 168.533 kb on - strand, within MPMX19_04775at 168.533 kb on - strand, within MPMX19_04775at 168.574 kb on + strand, within MPMX19_04775at 168.574 kb on + strand, within MPMX19_04775at 168.574 kb on + strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.781 kb on + strand, within MPMX19_04775at 168.781 kb on + strand, within MPMX19_04775at 168.782 kb on - strand, within MPMX19_04775at 168.782 kb on - strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.112 kb on - strand, within MPMX19_04775at 169.112 kb on - strand, within MPMX19_04775at 169.171 kb on + strandat 169.171 kb on + strandat 169.171 kb on + strandat 169.172 kb on - strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.190 kb on - strandat 169.190 kb on - strandat 169.238 kb on - strandat 169.238 kb on - strandat 169.238 kb on - strandat 169.238 kb on - strandat 169.356 kb on - strandat 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.624 kb on - strand, within MPMX19_04776at 169.624 kb on - strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.038 kb on - strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.455 kb on + strandat 170.455 kb on + strandat 170.455 kb on + strandat 170.515 kb on + strandat 170.555 kb on + strandat 170.556 kb on - strandat 171.192 kb on + strand, within MPMX19_04777

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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168,461 - MPMX19_04775 0.59 -0.8
168,461 - MPMX19_04775 0.59 +1.5
168,532 + MPMX19_04775 0.62 -0.5
168,532 + MPMX19_04775 0.62 +0.1
168,532 + MPMX19_04775 0.62 -0.5
168,533 - MPMX19_04775 0.62 -1.1
168,533 - MPMX19_04775 0.62 +0.5
168,533 - MPMX19_04775 0.62 +1.2
168,574 + MPMX19_04775 0.64 +0.7
168,574 + MPMX19_04775 0.64 -1.4
168,574 + MPMX19_04775 0.64 +0.5
168,575 - MPMX19_04775 0.64 -1.0
168,575 - MPMX19_04775 0.64 -0.8
168,575 - MPMX19_04775 0.64 -0.9
168,575 - MPMX19_04775 0.64 +0.9
168,575 - MPMX19_04775 0.64 -0.1
168,575 - MPMX19_04775 0.64 +0.0
168,643 + MPMX19_04775 0.67 -1.0
168,643 + MPMX19_04775 0.67 -0.2
168,643 + MPMX19_04775 0.67 -0.9
168,643 + MPMX19_04775 0.67 -0.1
168,643 + MPMX19_04775 0.67 -0.1
168,644 - MPMX19_04775 0.67 -0.7
168,644 - MPMX19_04775 0.67 +0.5
168,644 - MPMX19_04775 0.67 -0.5
168,644 - MPMX19_04775 0.67 +1.7
168,644 - MPMX19_04775 0.67 -0.3
168,644 - MPMX19_04775 0.67 +0.5
168,644 - MPMX19_04775 0.67 -1.1
168,781 + MPMX19_04775 0.74 -0.9
168,781 + MPMX19_04775 0.74 +1.1
168,782 - MPMX19_04775 0.74 +0.8
168,782 - MPMX19_04775 0.74 +1.7
168,877 + MPMX19_04775 0.78 -1.0
168,877 + MPMX19_04775 0.78 -1.1
168,877 + MPMX19_04775 0.78 +0.0
168,877 + MPMX19_04775 0.78 -0.5
168,877 + MPMX19_04775 0.78 +0.7
168,877 + MPMX19_04775 0.78 +0.0
168,877 + MPMX19_04775 0.78 -0.8
168,877 + MPMX19_04775 0.78 +0.1
168,877 + MPMX19_04775 0.78 -0.8
168,877 + MPMX19_04775 0.78 -1.0
168,877 + MPMX19_04775 0.78 -1.1
169,111 + MPMX19_04775 0.89 -1.5
169,111 + MPMX19_04775 0.89 +1.9
169,111 + MPMX19_04775 0.89 -0.5
169,111 + MPMX19_04775 0.89 -0.1
169,111 + MPMX19_04775 0.89 +0.2
169,111 + MPMX19_04775 0.89 +0.8
169,112 - MPMX19_04775 0.89 -0.4
169,112 - MPMX19_04775 0.89 +0.9
169,171 + -0.5
169,171 + -1.4
169,171 + -1.9
169,172 - -0.9
169,189 + -0.4
169,189 + +1.2
169,189 + -0.7
169,189 + -0.8
169,189 + -0.3
169,189 + -0.6
169,190 - -0.2
169,190 - -0.1
169,238 - +0.5
169,238 - +0.7
169,238 - -1.7
169,238 - -0.6
169,356 - -0.1
169,623 + MPMX19_04776 0.25 +1.5
169,623 + MPMX19_04776 0.25 -1.4
169,623 + MPMX19_04776 0.25 +0.0
169,623 + MPMX19_04776 0.25 -0.7
169,623 + MPMX19_04776 0.25 -1.8
169,624 - MPMX19_04776 0.25 +0.0
169,624 - MPMX19_04776 0.25 -1.3
169,938 + MPMX19_04776 0.54 +0.7
169,938 + MPMX19_04776 0.54 -0.5
169,938 + MPMX19_04776 0.54 -0.7
169,938 + MPMX19_04776 0.54 -1.5
169,938 + MPMX19_04776 0.54 +0.1
169,938 + MPMX19_04776 0.54 -0.5
169,938 + MPMX19_04776 0.54 +0.7
169,938 + MPMX19_04776 0.54 -1.2
169,938 + MPMX19_04776 0.54 -0.1
169,938 + MPMX19_04776 0.54 -1.0
169,938 + MPMX19_04776 0.54 -1.3
169,938 + MPMX19_04776 0.54 -0.1
169,938 + MPMX19_04776 0.54 -1.3
169,938 + MPMX19_04776 0.54 -1.5
169,939 - MPMX19_04776 0.54 -0.7
169,939 - MPMX19_04776 0.54 -0.9
169,939 - MPMX19_04776 0.54 -1.3
169,939 - MPMX19_04776 0.54 -0.5
169,939 - MPMX19_04776 0.54 -1.9
169,939 - MPMX19_04776 0.54 +0.1
169,939 - MPMX19_04776 0.54 -2.8
170,037 + MPMX19_04776 0.63 -0.1
170,037 + MPMX19_04776 0.63 -0.5
170,037 + MPMX19_04776 0.63 -1.0
170,037 + MPMX19_04776 0.63 -0.2
170,038 - MPMX19_04776 0.63 +0.2
170,289 + MPMX19_04776 0.86 -1.5
170,289 + MPMX19_04776 0.86 -1.1
170,289 + MPMX19_04776 0.86 -0.5
170,290 - MPMX19_04776 0.86 -1.2
170,290 - MPMX19_04776 0.86 +0.2
170,290 - MPMX19_04776 0.86 +1.0
170,290 - MPMX19_04776 0.86 -1.0
170,290 - MPMX19_04776 0.86 +0.1
170,290 - MPMX19_04776 0.86 +0.3
170,290 - MPMX19_04776 0.86 -1.9
170,310 + MPMX19_04776 0.88 +0.6
170,310 + MPMX19_04776 0.88 -1.7
170,310 + MPMX19_04776 0.88 -0.3
170,310 + MPMX19_04776 0.88 -0.1
170,310 + MPMX19_04776 0.88 -0.8
170,310 + MPMX19_04776 0.88 -1.7
170,310 + MPMX19_04776 0.88 +0.5
170,311 - MPMX19_04776 0.88 -2.0
170,311 - MPMX19_04776 0.88 +1.9
170,311 - MPMX19_04776 0.88 +0.8
170,311 - MPMX19_04776 0.88 -1.5
170,311 - MPMX19_04776 0.88 +0.1
170,311 - MPMX19_04776 0.88 +0.5
170,455 + -0.8
170,455 + -0.0
170,455 + -0.2
170,515 + +1.2
170,555 + +0.2
170,556 - +1.2
171,192 + MPMX19_04777 0.24 -0.9

Or see this region's nucleotide sequence