Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04713

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04711 and MPMX19_04712 are separated by 19 nucleotidesMPMX19_04712 and MPMX19_04713 are separated by 75 nucleotidesMPMX19_04713 and MPMX19_04714 are separated by 200 nucleotides MPMX19_04711: MPMX19_04711 - Formyltetrahydrofolate deformylase, at 98,808 to 99,671 _04711 MPMX19_04712: MPMX19_04712 - hypothetical protein, at 99,691 to 99,867 _04712 MPMX19_04713: MPMX19_04713 - putative MFS-type transporter YcaD, at 99,943 to 101,217 _04713 MPMX19_04714: MPMX19_04714 - L-cystine-binding protein FliY, at 101,418 to 102,164 _04714 Position (kb) 99 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 99.132 kb on + strand, within MPMX19_04711at 99.229 kb on - strand, within MPMX19_04711at 99.229 kb on - strand, within MPMX19_04711at 99.229 kb on - strand, within MPMX19_04711at 99.330 kb on + strand, within MPMX19_04711at 99.331 kb on - strand, within MPMX19_04711at 99.331 kb on - strand, within MPMX19_04711at 99.331 kb on - strand, within MPMX19_04711at 99.331 kb on - strand, within MPMX19_04711at 99.331 kb on - strand, within MPMX19_04711at 99.331 kb on - strand, within MPMX19_04711at 99.403 kb on + strand, within MPMX19_04711at 99.403 kb on + strand, within MPMX19_04711at 99.430 kb on - strand, within MPMX19_04711at 99.430 kb on - strand, within MPMX19_04711at 99.441 kb on + strand, within MPMX19_04711at 99.441 kb on + strand, within MPMX19_04711at 99.441 kb on + strand, within MPMX19_04711at 99.442 kb on - strand, within MPMX19_04711at 99.442 kb on - strand, within MPMX19_04711at 99.442 kb on - strand, within MPMX19_04711at 99.442 kb on - strand, within MPMX19_04711at 99.480 kb on + strand, within MPMX19_04711at 99.480 kb on + strand, within MPMX19_04711at 99.480 kb on + strand, within MPMX19_04711at 99.480 kb on + strand, within MPMX19_04711at 99.480 kb on + strand, within MPMX19_04711at 99.480 kb on + strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.481 kb on - strand, within MPMX19_04711at 99.863 kb on + strandat 99.864 kb on - strandat 99.864 kb on - strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.865 kb on + strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 99.866 kb on - strandat 100.003 kb on - strandat 100.087 kb on + strand, within MPMX19_04713at 100.087 kb on + strand, within MPMX19_04713at 100.087 kb on + strand, within MPMX19_04713at 100.087 kb on + strand, within MPMX19_04713at 100.087 kb on + strand, within MPMX19_04713at 100.088 kb on - strand, within MPMX19_04713at 100.090 kb on + strand, within MPMX19_04713at 100.090 kb on + strand, within MPMX19_04713at 100.090 kb on + strand, within MPMX19_04713at 100.090 kb on + strand, within MPMX19_04713at 100.090 kb on + strand, within MPMX19_04713at 100.091 kb on - strand, within MPMX19_04713at 100.091 kb on - strand, within MPMX19_04713at 100.091 kb on - strand, within MPMX19_04713at 100.091 kb on - strand, within MPMX19_04713at 100.149 kb on + strand, within MPMX19_04713at 100.149 kb on + strand, within MPMX19_04713at 100.149 kb on + strand, within MPMX19_04713at 100.149 kb on + strand, within MPMX19_04713at 100.149 kb on + strand, within MPMX19_04713at 100.150 kb on - strand, within MPMX19_04713at 100.150 kb on - strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.342 kb on + strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.343 kb on - strand, within MPMX19_04713at 100.357 kb on + strand, within MPMX19_04713at 100.357 kb on + strand, within MPMX19_04713at 100.357 kb on + strand, within MPMX19_04713at 100.357 kb on + strand, within MPMX19_04713at 100.357 kb on + strand, within MPMX19_04713at 100.358 kb on - strand, within MPMX19_04713at 100.381 kb on + strand, within MPMX19_04713at 100.381 kb on + strand, within MPMX19_04713at 100.381 kb on + strand, within MPMX19_04713at 100.381 kb on + strand, within MPMX19_04713at 100.381 kb on + strand, within MPMX19_04713at 100.382 kb on - strand, within MPMX19_04713at 100.382 kb on - strand, within MPMX19_04713at 100.382 kb on - strand, within MPMX19_04713at 100.528 kb on + strand, within MPMX19_04713at 100.591 kb on + strand, within MPMX19_04713at 100.591 kb on + strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.592 kb on - strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.609 kb on + strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.610 kb on - strand, within MPMX19_04713at 100.716 kb on + strand, within MPMX19_04713at 100.716 kb on + strand, within MPMX19_04713at 100.716 kb on + strand, within MPMX19_04713at 100.716 kb on + strand, within MPMX19_04713at 100.855 kb on + strand, within MPMX19_04713at 100.855 kb on + strand, within MPMX19_04713at 100.855 kb on + strand, within MPMX19_04713at 100.856 kb on - strand, within MPMX19_04713at 100.856 kb on - strand, within MPMX19_04713at 101.288 kb on + strandat 101.288 kb on + strandat 101.288 kb on + strandat 101.288 kb on + strandat 101.288 kb on + strandat 101.289 kb on - strandat 101.289 kb on - strandat 101.289 kb on - strandat 101.289 kb on - strandat 101.385 kb on - strandat 101.385 kb on - strandat 101.620 kb on - strand, within MPMX19_04714at 101.796 kb on + strand, within MPMX19_04714at 101.797 kb on - strand, within MPMX19_04714at 101.853 kb on + strand, within MPMX19_04714at 101.854 kb on - strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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99,132 + MPMX19_04711 0.38 -0.9
99,229 - MPMX19_04711 0.49 -0.6
99,229 - MPMX19_04711 0.49 +1.4
99,229 - MPMX19_04711 0.49 -1.7
99,330 + MPMX19_04711 0.60 +0.8
99,331 - MPMX19_04711 0.61 -0.1
99,331 - MPMX19_04711 0.61 -1.9
99,331 - MPMX19_04711 0.61 -0.1
99,331 - MPMX19_04711 0.61 +0.4
99,331 - MPMX19_04711 0.61 -0.9
99,331 - MPMX19_04711 0.61 +0.1
99,403 + MPMX19_04711 0.69 -1.3
99,403 + MPMX19_04711 0.69 +0.6
99,430 - MPMX19_04711 0.72 +0.9
99,430 - MPMX19_04711 0.72 -0.4
99,441 + MPMX19_04711 0.73 -0.3
99,441 + MPMX19_04711 0.73 -1.3
99,441 + MPMX19_04711 0.73 +0.1
99,442 - MPMX19_04711 0.73 +0.2
99,442 - MPMX19_04711 0.73 -0.6
99,442 - MPMX19_04711 0.73 -0.2
99,442 - MPMX19_04711 0.73 +0.2
99,480 + MPMX19_04711 0.78 +1.1
99,480 + MPMX19_04711 0.78 -0.3
99,480 + MPMX19_04711 0.78 +0.1
99,480 + MPMX19_04711 0.78 -1.4
99,480 + MPMX19_04711 0.78 -0.4
99,480 + MPMX19_04711 0.78 +0.6
99,481 - MPMX19_04711 0.78 +0.6
99,481 - MPMX19_04711 0.78 +0.4
99,481 - MPMX19_04711 0.78 -2.9
99,481 - MPMX19_04711 0.78 +0.4
99,481 - MPMX19_04711 0.78 +0.2
99,481 - MPMX19_04711 0.78 -1.4
99,481 - MPMX19_04711 0.78 +0.1
99,481 - MPMX19_04711 0.78 +0.7
99,481 - MPMX19_04711 0.78 -1.0
99,481 - MPMX19_04711 0.78 -2.0
99,481 - MPMX19_04711 0.78 +0.0
99,863 + -0.6
99,864 - -0.5
99,864 - +0.3
99,865 + +0.4
99,865 + -0.1
99,865 + -1.3
99,865 + -0.3
99,865 + -1.7
99,865 + +0.1
99,865 + +0.7
99,865 + -0.1
99,865 + -0.9
99,865 + -0.0
99,865 + -0.7
99,866 - -0.1
99,866 - -1.1
99,866 - -0.6
99,866 - -1.9
99,866 - -0.6
99,866 - -0.4
99,866 - -0.3
99,866 - -0.5
99,866 - -0.2
99,866 - +0.8
99,866 - -0.5
99,866 - -0.1
99,866 - +0.3
100,003 - -1.6
100,087 + MPMX19_04713 0.11 +1.1
100,087 + MPMX19_04713 0.11 -1.9
100,087 + MPMX19_04713 0.11 -0.6
100,087 + MPMX19_04713 0.11 -1.1
100,087 + MPMX19_04713 0.11 +0.4
100,088 - MPMX19_04713 0.11 -0.6
100,090 + MPMX19_04713 0.12 -0.8
100,090 + MPMX19_04713 0.12 +0.6
100,090 + MPMX19_04713 0.12 -0.0
100,090 + MPMX19_04713 0.12 +0.6
100,090 + MPMX19_04713 0.12 +1.6
100,091 - MPMX19_04713 0.12 -1.4
100,091 - MPMX19_04713 0.12 -2.0
100,091 - MPMX19_04713 0.12 +0.2
100,091 - MPMX19_04713 0.12 +1.2
100,149 + MPMX19_04713 0.16 +0.4
100,149 + MPMX19_04713 0.16 -0.7
100,149 + MPMX19_04713 0.16 -0.4
100,149 + MPMX19_04713 0.16 -0.4
100,149 + MPMX19_04713 0.16 -0.8
100,150 - MPMX19_04713 0.16 -0.9
100,150 - MPMX19_04713 0.16 -1.4
100,342 + MPMX19_04713 0.31 -2.5
100,342 + MPMX19_04713 0.31 -0.1
100,342 + MPMX19_04713 0.31 +0.3
100,342 + MPMX19_04713 0.31 -0.3
100,342 + MPMX19_04713 0.31 +0.3
100,342 + MPMX19_04713 0.31 -0.7
100,342 + MPMX19_04713 0.31 +0.0
100,342 + MPMX19_04713 0.31 -0.1
100,342 + MPMX19_04713 0.31 -1.4
100,343 - MPMX19_04713 0.31 +0.3
100,343 - MPMX19_04713 0.31 -0.9
100,343 - MPMX19_04713 0.31 -0.8
100,343 - MPMX19_04713 0.31 -0.3
100,343 - MPMX19_04713 0.31 +0.1
100,343 - MPMX19_04713 0.31 -1.1
100,343 - MPMX19_04713 0.31 -0.6
100,343 - MPMX19_04713 0.31 -0.1
100,343 - MPMX19_04713 0.31 -1.5
100,343 - MPMX19_04713 0.31 -0.7
100,357 + MPMX19_04713 0.32 -0.1
100,357 + MPMX19_04713 0.32 +0.2
100,357 + MPMX19_04713 0.32 -0.3
100,357 + MPMX19_04713 0.32 -0.9
100,357 + MPMX19_04713 0.32 +0.7
100,358 - MPMX19_04713 0.33 +0.1
100,381 + MPMX19_04713 0.34 +1.1
100,381 + MPMX19_04713 0.34 +0.1
100,381 + MPMX19_04713 0.34 -0.1
100,381 + MPMX19_04713 0.34 +2.0
100,381 + MPMX19_04713 0.34 -0.0
100,382 - MPMX19_04713 0.34 -2.0
100,382 - MPMX19_04713 0.34 -0.7
100,382 - MPMX19_04713 0.34 +0.1
100,528 + MPMX19_04713 0.46 +0.9
100,591 + MPMX19_04713 0.51 -0.5
100,591 + MPMX19_04713 0.51 +0.9
100,592 - MPMX19_04713 0.51 +0.9
100,592 - MPMX19_04713 0.51 -0.4
100,592 - MPMX19_04713 0.51 -0.9
100,592 - MPMX19_04713 0.51 -0.1
100,592 - MPMX19_04713 0.51 +0.4
100,592 - MPMX19_04713 0.51 -0.2
100,592 - MPMX19_04713 0.51 -0.0
100,592 - MPMX19_04713 0.51 +1.9
100,592 - MPMX19_04713 0.51 +0.6
100,592 - MPMX19_04713 0.51 -0.9
100,592 - MPMX19_04713 0.51 -0.0
100,592 - MPMX19_04713 0.51 -0.9
100,592 - MPMX19_04713 0.51 +0.4
100,609 + MPMX19_04713 0.52 -0.7
100,609 + MPMX19_04713 0.52 -0.4
100,609 + MPMX19_04713 0.52 +0.2
100,609 + MPMX19_04713 0.52 -2.6
100,609 + MPMX19_04713 0.52 -0.3
100,609 + MPMX19_04713 0.52 -0.0
100,609 + MPMX19_04713 0.52 +0.9
100,609 + MPMX19_04713 0.52 +1.0
100,609 + MPMX19_04713 0.52 -1.4
100,609 + MPMX19_04713 0.52 -0.6
100,610 - MPMX19_04713 0.52 -0.1
100,610 - MPMX19_04713 0.52 -0.2
100,610 - MPMX19_04713 0.52 -1.1
100,610 - MPMX19_04713 0.52 +1.0
100,610 - MPMX19_04713 0.52 +0.9
100,610 - MPMX19_04713 0.52 -0.3
100,610 - MPMX19_04713 0.52 -1.6
100,610 - MPMX19_04713 0.52 -2.0
100,610 - MPMX19_04713 0.52 -1.8
100,610 - MPMX19_04713 0.52 -0.0
100,716 + MPMX19_04713 0.61 -1.4
100,716 + MPMX19_04713 0.61 +0.4
100,716 + MPMX19_04713 0.61 -2.3
100,716 + MPMX19_04713 0.61 -0.6
100,855 + MPMX19_04713 0.72 -0.8
100,855 + MPMX19_04713 0.72 -0.3
100,855 + MPMX19_04713 0.72 -0.4
100,856 - MPMX19_04713 0.72 +0.8
100,856 - MPMX19_04713 0.72 +0.1
101,288 + +0.5
101,288 + -1.2
101,288 + +0.4
101,288 + -0.5
101,288 + +0.3
101,289 - -0.4
101,289 - +0.1
101,289 - -0.6
101,289 - -0.6
101,385 - -0.6
101,385 - -0.7
101,620 - MPMX19_04714 0.27 -0.9
101,796 + MPMX19_04714 0.51 +0.1
101,797 - MPMX19_04714 0.51 -0.9
101,853 + MPMX19_04714 0.58 -1.3
101,854 - MPMX19_04714 0.58 +0.7
101,979 + MPMX19_04714 0.75 -1.7
101,979 + MPMX19_04714 0.75 -0.2
101,979 + MPMX19_04714 0.75 -0.6
101,979 + MPMX19_04714 0.75 -1.6
101,979 + MPMX19_04714 0.75 -1.2
101,979 + MPMX19_04714 0.75 -1.2
101,980 - MPMX19_04714 0.75 -1.0
101,980 - MPMX19_04714 0.75 +0.6
101,980 - MPMX19_04714 0.75 -1.6
101,980 - MPMX19_04714 0.75 -1.1
101,980 - MPMX19_04714 0.75 +0.9
102,051 + MPMX19_04714 0.85 +0.2
102,051 + MPMX19_04714 0.85 -0.3
102,051 + MPMX19_04714 0.85 -1.6
102,051 + MPMX19_04714 0.85 -1.6
102,051 + MPMX19_04714 0.85 -0.6
102,051 + MPMX19_04714 0.85 -0.6
102,051 + MPMX19_04714 0.85 +0.9
102,052 - MPMX19_04714 0.85 -0.2
102,052 - MPMX19_04714 0.85 -1.1
102,052 - MPMX19_04714 0.85 +0.2
102,052 - MPMX19_04714 0.85 -2.4
102,052 - MPMX19_04714 0.85 -0.1
102,052 - MPMX19_04714 0.85 -0.3
102,052 - MPMX19_04714 0.85 -0.1
102,162 + -1.5

Or see this region's nucleotide sequence