Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04489

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04487 and MPMX19_04488 are separated by 14 nucleotidesMPMX19_04488 and MPMX19_04489 are separated by 20 nucleotidesMPMX19_04489 and MPMX19_04490 are separated by 187 nucleotides MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567 _04487 MPMX19_04488: MPMX19_04488 - putative glutamine ABC transporter permease protein GlnM, at 854,582 to 855,250 _04488 MPMX19_04489: MPMX19_04489 - D-threonine aldolase, at 855,271 to 856,557 _04489 MPMX19_04490: MPMX19_04490 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 856,745 to 857,542 _04490 Position (kb) 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.281 kb on + strand, within MPMX19_04487at 854.282 kb on - strand, within MPMX19_04487at 854.282 kb on - strand, within MPMX19_04487at 854.282 kb on - strand, within MPMX19_04487at 854.353 kb on + strand, within MPMX19_04487at 854.353 kb on + strand, within MPMX19_04487at 854.353 kb on + strand, within MPMX19_04487at 854.353 kb on + strand, within MPMX19_04487at 854.353 kb on + strand, within MPMX19_04487at 854.353 kb on + strand, within MPMX19_04487at 854.354 kb on - strand, within MPMX19_04487at 854.354 kb on - strand, within MPMX19_04487at 854.354 kb on - strand, within MPMX19_04487at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.661 kb on + strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.662 kb on - strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.682 kb on + strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.683 kb on - strand, within MPMX19_04488at 854.700 kb on + strand, within MPMX19_04488at 854.700 kb on + strand, within MPMX19_04488at 854.700 kb on + strand, within MPMX19_04488at 854.701 kb on - strand, within MPMX19_04488at 854.701 kb on - strand, within MPMX19_04488at 854.701 kb on - strand, within MPMX19_04488at 854.701 kb on - strand, within MPMX19_04488at 854.811 kb on + strand, within MPMX19_04488at 854.943 kb on + strand, within MPMX19_04488at 854.943 kb on + strand, within MPMX19_04488at 854.943 kb on + strand, within MPMX19_04488at 854.943 kb on + strand, within MPMX19_04488at 854.943 kb on + strand, within MPMX19_04488at 854.944 kb on - strand, within MPMX19_04488at 854.944 kb on - strand, within MPMX19_04488at 854.955 kb on + strand, within MPMX19_04488at 854.955 kb on + strand, within MPMX19_04488at 854.956 kb on - strand, within MPMX19_04488at 855.075 kb on + strand, within MPMX19_04488at 855.075 kb on + strand, within MPMX19_04488at 855.075 kb on + strand, within MPMX19_04488at 855.075 kb on + strand, within MPMX19_04488at 855.076 kb on - strand, within MPMX19_04488at 855.076 kb on - strand, within MPMX19_04488at 855.076 kb on - strand, within MPMX19_04488at 855.076 kb on - strand, within MPMX19_04488at 855.076 kb on - strand, within MPMX19_04488at 855.076 kb on - strand, within MPMX19_04488at 855.217 kb on - strandat 855.290 kb on + strandat 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.683 kb on + strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.684 kb on - strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 856.361 kb on + strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.621 kb on + strandat 856.710 kb on + strandat 856.710 kb on + strandat 856.710 kb on + strandat 856.710 kb on + strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.923 kb on - strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.436 kb on - strand, within MPMX19_04490at 857.436 kb on - strand, within MPMX19_04490at 857.436 kb on - strand, within MPMX19_04490at 857.546 kb on + strandat 857.546 kb on + strandat 857.546 kb on + strandat 857.546 kb on + strandat 857.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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854,281 + MPMX19_04487 0.56 -1.0
854,281 + MPMX19_04487 0.56 +0.1
854,281 + MPMX19_04487 0.56 +1.2
854,281 + MPMX19_04487 0.56 +0.0
854,281 + MPMX19_04487 0.56 -2.0
854,281 + MPMX19_04487 0.56 +1.2
854,281 + MPMX19_04487 0.56 -1.0
854,281 + MPMX19_04487 0.56 -0.4
854,282 - MPMX19_04487 0.56 -1.3
854,282 - MPMX19_04487 0.56 -1.5
854,282 - MPMX19_04487 0.56 +2.2
854,353 + MPMX19_04487 0.67 -0.5
854,353 + MPMX19_04487 0.67 +0.3
854,353 + MPMX19_04487 0.67 -1.6
854,353 + MPMX19_04487 0.67 -1.1
854,353 + MPMX19_04487 0.67 -0.8
854,353 + MPMX19_04487 0.67 +0.2
854,354 - MPMX19_04487 0.67 -2.2
854,354 - MPMX19_04487 0.67 -0.2
854,354 - MPMX19_04487 0.67 -0.6
854,661 + MPMX19_04488 0.12 +0.5
854,661 + MPMX19_04488 0.12 +0.2
854,661 + MPMX19_04488 0.12 -1.5
854,661 + MPMX19_04488 0.12 +0.8
854,661 + MPMX19_04488 0.12 +0.3
854,661 + MPMX19_04488 0.12 +0.1
854,661 + MPMX19_04488 0.12 -1.7
854,661 + MPMX19_04488 0.12 -0.4
854,661 + MPMX19_04488 0.12 +0.7
854,662 - MPMX19_04488 0.12 -1.5
854,662 - MPMX19_04488 0.12 -1.0
854,662 - MPMX19_04488 0.12 -0.5
854,662 - MPMX19_04488 0.12 -1.1
854,662 - MPMX19_04488 0.12 +0.2
854,662 - MPMX19_04488 0.12 -1.5
854,662 - MPMX19_04488 0.12 -0.4
854,662 - MPMX19_04488 0.12 -0.7
854,662 - MPMX19_04488 0.12 +0.3
854,662 - MPMX19_04488 0.12 -0.3
854,662 - MPMX19_04488 0.12 +0.0
854,682 + MPMX19_04488 0.15 -0.5
854,682 + MPMX19_04488 0.15 -1.7
854,682 + MPMX19_04488 0.15 +0.5
854,682 + MPMX19_04488 0.15 +0.1
854,682 + MPMX19_04488 0.15 +1.6
854,682 + MPMX19_04488 0.15 -1.0
854,682 + MPMX19_04488 0.15 +0.2
854,682 + MPMX19_04488 0.15 -1.5
854,682 + MPMX19_04488 0.15 -0.8
854,682 + MPMX19_04488 0.15 -0.2
854,683 - MPMX19_04488 0.15 -0.9
854,683 - MPMX19_04488 0.15 -0.6
854,683 - MPMX19_04488 0.15 +0.2
854,683 - MPMX19_04488 0.15 -0.6
854,683 - MPMX19_04488 0.15 -0.2
854,683 - MPMX19_04488 0.15 -0.7
854,683 - MPMX19_04488 0.15 -1.3
854,683 - MPMX19_04488 0.15 -0.5
854,683 - MPMX19_04488 0.15 -0.4
854,683 - MPMX19_04488 0.15 +0.1
854,683 - MPMX19_04488 0.15 +0.3
854,683 - MPMX19_04488 0.15 -0.9
854,683 - MPMX19_04488 0.15 +1.0
854,700 + MPMX19_04488 0.18 -1.5
854,700 + MPMX19_04488 0.18 -0.9
854,700 + MPMX19_04488 0.18 -0.1
854,701 - MPMX19_04488 0.18 -0.2
854,701 - MPMX19_04488 0.18 -0.3
854,701 - MPMX19_04488 0.18 -1.0
854,701 - MPMX19_04488 0.18 -1.0
854,811 + MPMX19_04488 0.34 -0.6
854,943 + MPMX19_04488 0.54 -0.6
854,943 + MPMX19_04488 0.54 +0.7
854,943 + MPMX19_04488 0.54 -0.7
854,943 + MPMX19_04488 0.54 +1.4
854,943 + MPMX19_04488 0.54 -0.4
854,944 - MPMX19_04488 0.54 -0.5
854,944 - MPMX19_04488 0.54 -0.1
854,955 + MPMX19_04488 0.56 -0.4
854,955 + MPMX19_04488 0.56 -0.4
854,956 - MPMX19_04488 0.56 -0.7
855,075 + MPMX19_04488 0.74 -1.8
855,075 + MPMX19_04488 0.74 -0.8
855,075 + MPMX19_04488 0.74 -0.4
855,075 + MPMX19_04488 0.74 -1.0
855,076 - MPMX19_04488 0.74 -0.2
855,076 - MPMX19_04488 0.74 -1.3
855,076 - MPMX19_04488 0.74 +0.0
855,076 - MPMX19_04488 0.74 +0.2
855,076 - MPMX19_04488 0.74 -0.4
855,076 - MPMX19_04488 0.74 -1.0
855,217 - -1.4
855,290 + -1.4
855,683 + MPMX19_04489 0.32 +0.9
855,683 + MPMX19_04489 0.32 +1.4
855,683 + MPMX19_04489 0.32 -0.5
855,683 + MPMX19_04489 0.32 -1.3
855,683 + MPMX19_04489 0.32 +0.5
855,683 + MPMX19_04489 0.32 +0.1
855,683 + MPMX19_04489 0.32 -0.1
855,683 + MPMX19_04489 0.32 +0.4
855,683 + MPMX19_04489 0.32 -1.2
855,683 + MPMX19_04489 0.32 -0.6
855,683 + MPMX19_04489 0.32 -0.6
855,683 + MPMX19_04489 0.32 +2.0
855,684 - MPMX19_04489 0.32 -0.5
855,684 - MPMX19_04489 0.32 -1.0
855,684 - MPMX19_04489 0.32 -0.1
855,684 - MPMX19_04489 0.32 +0.8
855,684 - MPMX19_04489 0.32 +2.8
855,684 - MPMX19_04489 0.32 +0.2
855,684 - MPMX19_04489 0.32 -0.6
855,932 + MPMX19_04489 0.51 -1.7
855,932 + MPMX19_04489 0.51 +0.6
855,932 + MPMX19_04489 0.51 +0.1
855,932 + MPMX19_04489 0.51 +0.4
855,932 + MPMX19_04489 0.51 -0.5
855,932 + MPMX19_04489 0.51 +0.7
855,932 + MPMX19_04489 0.51 -1.0
855,932 + MPMX19_04489 0.51 -0.5
855,932 + MPMX19_04489 0.51 +0.2
855,932 + MPMX19_04489 0.51 +0.1
855,932 + MPMX19_04489 0.51 -1.1
855,932 + MPMX19_04489 0.51 +0.0
855,932 + MPMX19_04489 0.51 -0.7
855,932 + MPMX19_04489 0.51 -1.4
855,932 + MPMX19_04489 0.51 -0.3
855,932 + MPMX19_04489 0.51 +0.8
855,933 - MPMX19_04489 0.51 -1.8
855,933 - MPMX19_04489 0.51 +0.6
855,933 - MPMX19_04489 0.51 +0.9
855,933 - MPMX19_04489 0.51 -2.0
855,933 - MPMX19_04489 0.51 +0.2
855,933 - MPMX19_04489 0.51 +0.7
855,933 - MPMX19_04489 0.51 +0.3
855,933 - MPMX19_04489 0.51 -0.2
855,933 - MPMX19_04489 0.51 +0.0
855,933 - MPMX19_04489 0.51 -1.0
856,361 + MPMX19_04489 0.85 -2.1
856,362 - MPMX19_04489 0.85 -1.0
856,362 - MPMX19_04489 0.85 -1.6
856,362 - MPMX19_04489 0.85 -2.6
856,362 - MPMX19_04489 0.85 -0.8
856,621 + +1.1
856,710 + -2.0
856,710 + -0.3
856,710 + -0.2
856,710 + +0.5
856,711 - +0.3
856,711 - -1.8
856,711 - +0.6
856,711 - -0.1
856,711 - -0.2
856,796 + -1.1
856,796 + -0.4
856,796 + -0.0
856,796 + +0.0
856,796 + +0.3
856,797 - -1.3
856,797 - +1.4
856,797 - +0.4
856,797 - +0.0
856,797 - -0.1
856,797 - -0.7
856,797 - +1.6
856,797 - +1.2
856,923 - MPMX19_04490 0.22 +0.6
857,249 + MPMX19_04490 0.63 +0.6
857,249 + MPMX19_04490 0.63 -0.6
857,249 + MPMX19_04490 0.63 +0.2
857,249 + MPMX19_04490 0.63 -0.5
857,249 + MPMX19_04490 0.63 -1.9
857,249 + MPMX19_04490 0.63 +0.6
857,249 + MPMX19_04490 0.63 +0.0
857,249 + MPMX19_04490 0.63 -0.8
857,249 + MPMX19_04490 0.63 -0.6
857,250 - MPMX19_04490 0.63 +0.2
857,250 - MPMX19_04490 0.63 -0.2
857,250 - MPMX19_04490 0.63 +0.7
857,250 - MPMX19_04490 0.63 -0.2
857,250 - MPMX19_04490 0.63 +0.0
857,250 - MPMX19_04490 0.63 -0.9
857,250 - MPMX19_04490 0.63 +0.2
857,250 - MPMX19_04490 0.63 +0.6
857,250 - MPMX19_04490 0.63 -1.5
857,250 - MPMX19_04490 0.63 -1.8
857,250 - MPMX19_04490 0.63 -0.6
857,435 + MPMX19_04490 0.86 -0.6
857,435 + MPMX19_04490 0.86 -2.0
857,435 + MPMX19_04490 0.86 +0.6
857,435 + MPMX19_04490 0.86 +1.3
857,436 - MPMX19_04490 0.87 -1.0
857,436 - MPMX19_04490 0.87 -0.1
857,436 - MPMX19_04490 0.87 -1.5
857,546 + -1.4
857,546 + -0.8
857,546 + +0.5
857,546 + +0.7
857,547 - -0.4

Or see this region's nucleotide sequence