Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03541

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03540 and MPMX19_03541 are separated by 4 nucleotidesMPMX19_03541 and MPMX19_03542 overlap by 8 nucleotidesMPMX19_03542 and MPMX19_03543 overlap by 4 nucleotides MPMX19_03540: MPMX19_03540 - putative deoxycholate-binding periplasmic protein YgiS, at 959,256 to 960,827 _03540 MPMX19_03541: MPMX19_03541 - Glutathione transport system permease protein GsiC, at 960,832 to 961,779 _03541 MPMX19_03542: MPMX19_03542 - Glutathione transport system permease protein GsiD, at 961,772 to 962,602 _03542 MPMX19_03543: MPMX19_03543 - putative ABC transporter ATP-binding protein YejF, at 962,599 to 964,200 _03543 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.934 kb on + strand, within MPMX19_03540at 959.935 kb on - strand, within MPMX19_03540at 960.039 kb on + strand, within MPMX19_03540at 960.211 kb on - strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.492 kb on + strand, within MPMX19_03540at 960.493 kb on - strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.505 kb on - strand, within MPMX19_03540at 960.505 kb on - strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.654 kb on + strand, within MPMX19_03540at 960.654 kb on + strand, within MPMX19_03540at 960.655 kb on - strand, within MPMX19_03540at 960.655 kb on - strand, within MPMX19_03540at 960.655 kb on - strand, within MPMX19_03540at 960.738 kb on + strandat 960.738 kb on + strandat 960.738 kb on + strandat 960.738 kb on + strandat 960.738 kb on + strandat 960.739 kb on - strandat 960.739 kb on - strandat 960.739 kb on - strandat 960.739 kb on - strandat 960.750 kb on + strandat 960.750 kb on + strandat 960.751 kb on - strandat 960.874 kb on + strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.175 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.244 kb on - strand, within MPMX19_03541at 961.244 kb on - strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.471 kb on - strand, within MPMX19_03541at 961.580 kb on - strand, within MPMX19_03541at 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.712 kb on - strandat 961.744 kb on + strandat 961.744 kb on + strandat 961.745 kb on - strandat 961.745 kb on - strandat 962.072 kb on + strand, within MPMX19_03542at 962.260 kb on - strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.578 kb on + strandat 962.578 kb on + strandat 962.578 kb on + strandat 962.579 kb on - strandat 962.579 kb on - strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.638 kb on + strandat 962.638 kb on + strandat 962.639 kb on - strandat 962.639 kb on - strandat 962.639 kb on - strandat 962.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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959,913 + MPMX19_03540 0.42 -0.6
959,913 + MPMX19_03540 0.42 +0.9
959,913 + MPMX19_03540 0.42 +0.7
959,913 + MPMX19_03540 0.42 +0.7
959,913 + MPMX19_03540 0.42 -1.2
959,916 + MPMX19_03540 0.42 +1.2
959,916 + MPMX19_03540 0.42 -0.5
959,916 + MPMX19_03540 0.42 -0.8
959,916 + MPMX19_03540 0.42 -1.1
959,916 + MPMX19_03540 0.42 -0.2
959,916 + MPMX19_03540 0.42 -0.1
959,916 + MPMX19_03540 0.42 -0.4
959,916 + MPMX19_03540 0.42 -2.8
959,916 + MPMX19_03540 0.42 -0.9
959,916 + MPMX19_03540 0.42 +0.3
959,916 + MPMX19_03540 0.42 -0.5
959,917 - MPMX19_03540 0.42 -0.4
959,917 - MPMX19_03540 0.42 +0.8
959,917 - MPMX19_03540 0.42 +1.0
959,917 - MPMX19_03540 0.42 +0.6
959,917 - MPMX19_03540 0.42 -0.8
959,917 - MPMX19_03540 0.42 +1.9
959,934 + MPMX19_03540 0.43 -0.8
959,935 - MPMX19_03540 0.43 -1.3
960,039 + MPMX19_03540 0.50 +0.8
960,211 - MPMX19_03540 0.61 +0.3
960,459 + MPMX19_03540 0.77 +0.3
960,459 + MPMX19_03540 0.77 +0.1
960,459 + MPMX19_03540 0.77 -0.1
960,459 + MPMX19_03540 0.77 -0.5
960,459 + MPMX19_03540 0.77 -1.1
960,459 + MPMX19_03540 0.77 -1.1
960,459 + MPMX19_03540 0.77 -0.3
960,459 + MPMX19_03540 0.77 +0.4
960,460 - MPMX19_03540 0.77 +0.2
960,460 - MPMX19_03540 0.77 +0.7
960,460 - MPMX19_03540 0.77 +0.4
960,460 - MPMX19_03540 0.77 +0.9
960,460 - MPMX19_03540 0.77 -0.0
960,460 - MPMX19_03540 0.77 -1.1
960,460 - MPMX19_03540 0.77 -0.8
960,460 - MPMX19_03540 0.77 -1.0
960,460 - MPMX19_03540 0.77 -0.8
960,492 + MPMX19_03540 0.79 -1.2
960,493 - MPMX19_03540 0.79 -0.5
960,504 + MPMX19_03540 0.79 -1.3
960,504 + MPMX19_03540 0.79 -0.2
960,504 + MPMX19_03540 0.79 +0.9
960,504 + MPMX19_03540 0.79 -2.0
960,505 - MPMX19_03540 0.79 +0.5
960,505 - MPMX19_03540 0.79 -0.9
960,546 + MPMX19_03540 0.82 -0.7
960,546 + MPMX19_03540 0.82 +0.8
960,546 + MPMX19_03540 0.82 -1.5
960,546 + MPMX19_03540 0.82 -0.4
960,546 + MPMX19_03540 0.82 +0.0
960,546 + MPMX19_03540 0.82 -1.2
960,547 - MPMX19_03540 0.82 -1.3
960,547 - MPMX19_03540 0.82 -0.2
960,547 - MPMX19_03540 0.82 -1.6
960,547 - MPMX19_03540 0.82 +0.3
960,547 - MPMX19_03540 0.82 -2.2
960,547 - MPMX19_03540 0.82 -0.4
960,547 - MPMX19_03540 0.82 +1.1
960,547 - MPMX19_03540 0.82 -1.5
960,547 - MPMX19_03540 0.82 +0.6
960,547 - MPMX19_03540 0.82 -1.4
960,547 - MPMX19_03540 0.82 -1.2
960,547 - MPMX19_03540 0.82 +0.1
960,654 + MPMX19_03540 0.89 -0.8
960,654 + MPMX19_03540 0.89 -0.2
960,655 - MPMX19_03540 0.89 +0.4
960,655 - MPMX19_03540 0.89 -2.0
960,655 - MPMX19_03540 0.89 -1.2
960,738 + -0.6
960,738 + -0.8
960,738 + -0.8
960,738 + -0.5
960,738 + +0.3
960,739 - -0.3
960,739 - -0.6
960,739 - +0.7
960,739 - +0.5
960,750 + -0.3
960,750 + +0.4
960,751 - -1.6
960,874 + -0.1
960,875 - -0.6
960,875 - +0.9
960,875 - +0.2
960,875 - +0.3
960,875 - +0.2
960,875 - -0.5
961,028 - MPMX19_03541 0.21 -0.7
961,028 - MPMX19_03541 0.21 -0.5
961,028 - MPMX19_03541 0.21 -0.0
961,028 - MPMX19_03541 0.21 +0.5
961,028 - MPMX19_03541 0.21 +0.8
961,175 + MPMX19_03541 0.36 -0.6
961,243 + MPMX19_03541 0.43 +0.3
961,243 + MPMX19_03541 0.43 +0.7
961,243 + MPMX19_03541 0.43 -1.3
961,243 + MPMX19_03541 0.43 -1.0
961,243 + MPMX19_03541 0.43 +0.5
961,244 - MPMX19_03541 0.43 -0.1
961,244 - MPMX19_03541 0.43 -0.7
961,333 + MPMX19_03541 0.53 -2.3
961,333 + MPMX19_03541 0.53 +0.4
961,333 + MPMX19_03541 0.53 -0.7
961,334 - MPMX19_03541 0.53 -2.6
961,334 - MPMX19_03541 0.53 -2.0
961,334 - MPMX19_03541 0.53 -0.8
961,468 + MPMX19_03541 0.67 +0.7
961,468 + MPMX19_03541 0.67 -1.3
961,468 + MPMX19_03541 0.67 -0.1
961,468 + MPMX19_03541 0.67 -1.4
961,468 + MPMX19_03541 0.67 +0.1
961,468 + MPMX19_03541 0.67 +0.3
961,468 + MPMX19_03541 0.67 -0.4
961,468 + MPMX19_03541 0.67 +0.1
961,468 + MPMX19_03541 0.67 -0.5
961,468 + MPMX19_03541 0.67 -0.4
961,469 - MPMX19_03541 0.67 +2.2
961,469 - MPMX19_03541 0.67 -1.6
961,469 - MPMX19_03541 0.67 +0.5
961,469 - MPMX19_03541 0.67 -1.8
961,469 - MPMX19_03541 0.67 -0.5
961,469 - MPMX19_03541 0.67 +0.3
961,469 - MPMX19_03541 0.67 -1.3
961,469 - MPMX19_03541 0.67 -1.0
961,469 - MPMX19_03541 0.67 -0.8
961,469 - MPMX19_03541 0.67 +1.1
961,470 + MPMX19_03541 0.67 +0.9
961,470 + MPMX19_03541 0.67 -1.9
961,470 + MPMX19_03541 0.67 -0.1
961,471 - MPMX19_03541 0.67 +0.1
961,580 - MPMX19_03541 0.79 -1.6
961,711 + +1.2
961,711 + -0.2
961,711 + +0.8
961,711 + +0.3
961,712 - -0.2
961,744 + +1.5
961,744 + -0.3
961,745 - -2.0
961,745 - -0.9
962,072 + MPMX19_03542 0.36 +2.2
962,260 - MPMX19_03542 0.59 +0.1
962,273 + MPMX19_03542 0.60 -2.2
962,273 + MPMX19_03542 0.60 +0.5
962,273 + MPMX19_03542 0.60 -0.3
962,273 + MPMX19_03542 0.60 +0.1
962,273 + MPMX19_03542 0.60 -2.0
962,273 + MPMX19_03542 0.60 -0.3
962,273 + MPMX19_03542 0.60 +0.2
962,273 + MPMX19_03542 0.60 -0.3
962,274 - MPMX19_03542 0.60 -0.3
962,274 - MPMX19_03542 0.60 -0.3
962,274 - MPMX19_03542 0.60 +0.7
962,274 - MPMX19_03542 0.60 -1.0
962,274 - MPMX19_03542 0.60 +0.3
962,274 - MPMX19_03542 0.60 -0.4
962,274 - MPMX19_03542 0.60 +0.7
962,274 - MPMX19_03542 0.60 +0.3
962,480 + MPMX19_03542 0.85 -2.0
962,480 + MPMX19_03542 0.85 +1.5
962,480 + MPMX19_03542 0.85 -0.4
962,480 + MPMX19_03542 0.85 -2.0
962,480 + MPMX19_03542 0.85 -1.2
962,480 + MPMX19_03542 0.85 -0.1
962,480 + MPMX19_03542 0.85 -0.3
962,481 - MPMX19_03542 0.85 -1.5
962,481 - MPMX19_03542 0.85 -0.9
962,481 - MPMX19_03542 0.85 -0.2
962,481 - MPMX19_03542 0.85 -0.6
962,481 - MPMX19_03542 0.85 -0.3
962,481 - MPMX19_03542 0.85 -3.0
962,481 - MPMX19_03542 0.85 +0.4
962,481 - MPMX19_03542 0.85 -0.6
962,578 + -1.5
962,578 + -1.3
962,578 + -0.1
962,579 - -2.5
962,579 - -0.2
962,626 + +0.6
962,626 + -1.2
962,626 + -0.9
962,626 + +0.1
962,627 - -1.0
962,627 - +0.2
962,627 - -0.8
962,627 - +0.9
962,638 + -2.4
962,638 + -1.8
962,639 - +1.1
962,639 - -2.6
962,639 - +1.0
962,639 - -1.0

Or see this region's nucleotide sequence