Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03453 and MPMX19_03454 are separated by 67 nucleotides MPMX19_03454 and MPMX19_03455 are separated by 205 nucleotides
MPMX19_03453: MPMX19_03453 - Putative aliphatic sulfonates-binding protein, at 850,029 to 851,048
_03453
MPMX19_03454: MPMX19_03454 - Nitrate import ATP-binding protein NrtC, at 851,116 to 851,949
_03454
MPMX19_03455: MPMX19_03455 - HTH-type transcriptional repressor NagR, at 852,155 to 852,874
_03455
Position (kb) 851
852 Strain fitness (log2 ratio) -2
-1
0
1 at 850.221 kb on - strand, within MPMX19_03453 at 850.353 kb on - strand, within MPMX19_03453 at 850.388 kb on - strand, within MPMX19_03453 at 850.388 kb on - strand, within MPMX19_03453 at 850.388 kb on - strand, within MPMX19_03453 at 850.709 kb on - strand, within MPMX19_03453 at 850.709 kb on - strand, within MPMX19_03453 at 850.760 kb on - strand, within MPMX19_03453 at 850.760 kb on - strand, within MPMX19_03453 at 850.779 kb on - strand, within MPMX19_03453 at 850.779 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 850.874 kb on - strand, within MPMX19_03453 at 851.008 kb on + strand at 851.008 kb on + strand at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.651 kb on + strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.652 kb on - strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.843 kb on + strand, within MPMX19_03454 at 851.844 kb on - strand, within MPMX19_03454 at 852.189 kb on - strand at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.872 kb on + strand at 852.872 kb on + strand at 852.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 850,221 - MPMX19_03453 0.19 -0.4 850,353 - MPMX19_03453 0.32 -1.3 850,388 - MPMX19_03453 0.35 +0.5 850,388 - MPMX19_03453 0.35 +0.2 850,388 - MPMX19_03453 0.35 -0.8 850,709 - MPMX19_03453 0.67 -1.7 850,709 - MPMX19_03453 0.67 -1.2 850,760 - MPMX19_03453 0.72 -0.8 850,760 - MPMX19_03453 0.72 -0.2 850,779 - MPMX19_03453 0.74 -0.1 850,779 - MPMX19_03453 0.74 -0.8 850,874 - MPMX19_03453 0.83 -0.9 850,874 - MPMX19_03453 0.83 -0.9 850,874 - MPMX19_03453 0.83 -0.5 850,874 - MPMX19_03453 0.83 -0.3 851,008 + -2.0 851,008 + +0.9 851,651 + MPMX19_03454 0.64 -1.5 851,651 + MPMX19_03454 0.64 -0.3 851,651 + MPMX19_03454 0.64 -1.1 851,651 + MPMX19_03454 0.64 -0.7 851,651 + MPMX19_03454 0.64 -1.5 851,651 + MPMX19_03454 0.64 -1.6 851,652 - MPMX19_03454 0.64 +0.3 851,652 - MPMX19_03454 0.64 -1.0 851,652 - MPMX19_03454 0.64 -1.4 851,843 + MPMX19_03454 0.87 -1.5 851,843 + MPMX19_03454 0.87 -1.4 851,843 + MPMX19_03454 0.87 -0.2 851,844 - MPMX19_03454 0.87 +0.2 852,189 - -0.9 852,642 - MPMX19_03455 0.68 -0.7 852,642 - MPMX19_03455 0.68 -0.7 852,642 - MPMX19_03455 0.68 -0.4 852,642 - MPMX19_03455 0.68 -1.3 852,872 + +0.2 852,872 + +0.1 852,872 + +0.5
Or see this region's nucleotide sequence