Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03135 and MPMX19_03136 are separated by 493 nucleotides MPMX19_03136 and MPMX19_03137 are separated by 113 nucleotides MPMX19_03137 and MPMX19_03138 are separated by 42 nucleotides MPMX19_03138 and MPMX19_03139 are separated by 336 nucleotides
MPMX19_03135: MPMX19_03135 - hypothetical protein, at 423,822 to 424,664
_03135
MPMX19_03136: MPMX19_03136 - 16S ribosomal RNA, at 425,158 to 426,639
_03136
MPMX19_03137: MPMX19_03137 - tRNA-Ile, at 426,753 to 426,829
_03137
MPMX19_03138: MPMX19_03138 - tRNA-Ala, at 426,872 to 426,947
_03138
MPMX19_03139: MPMX19_03139 - 23S ribosomal RNA, at 427,284 to 430,017
_03139
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.542 kb on + strand, within MPMX19_03135 at 424.543 kb on - strand, within MPMX19_03135 at 424.543 kb on - strand, within MPMX19_03135 at 424.543 kb on - strand, within MPMX19_03135 at 424.543 kb on - strand, within MPMX19_03135 at 424.543 kb on - strand, within MPMX19_03135 at 424.543 kb on - strand, within MPMX19_03135 at 424.593 kb on + strand at 424.593 kb on + strand at 424.594 kb on - strand at 424.594 kb on - strand at 424.594 kb on - strand at 424.602 kb on + strand at 424.602 kb on + strand at 424.602 kb on + strand at 424.603 kb on - strand at 424.603 kb on - strand at 424.603 kb on - strand at 424.603 kb on - strand at 424.804 kb on - strand at 424.804 kb on - strand at 424.804 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand at 424.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 424,542 + MPMX19_03135 0.85 -1.4 424,542 + MPMX19_03135 0.85 -0.2 424,542 + MPMX19_03135 0.85 +0.2 424,542 + MPMX19_03135 0.85 +0.5 424,542 + MPMX19_03135 0.85 +0.1 424,542 + MPMX19_03135 0.85 -0.7 424,542 + MPMX19_03135 0.85 -0.5 424,542 + MPMX19_03135 0.85 +0.5 424,543 - MPMX19_03135 0.86 -1.5 424,543 - MPMX19_03135 0.86 -1.7 424,543 - MPMX19_03135 0.86 -1.0 424,543 - MPMX19_03135 0.86 -1.7 424,543 - MPMX19_03135 0.86 -1.8 424,543 - MPMX19_03135 0.86 +0.3 424,593 + +1.0 424,593 + -0.6 424,594 - -0.8 424,594 - -2.0 424,594 - -0.7 424,602 + -1.0 424,602 + -0.1 424,602 + -0.1 424,603 - -0.1 424,603 - +0.5 424,603 - +0.5 424,603 - -2.2 424,804 - -1.2 424,804 - +1.3 424,804 - -1.1 424,806 - -0.3 424,806 - -1.3 424,806 - +0.2 424,806 - +0.3 424,806 - -0.8 424,806 - -0.6 424,806 - -0.6 424,806 - -0.3
Or see this region's nucleotide sequence