Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02953

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02952 and MPMX19_02953 are separated by 84 nucleotidesMPMX19_02953 and MPMX19_02954 are separated by 11 nucleotides MPMX19_02952: MPMX19_02952 - Autoinducer 2-binding protein LsrB, at 210,329 to 211,375 _02952 MPMX19_02953: MPMX19_02953 - Ribose import ATP-binding protein RbsA, at 211,460 to 212,962 _02953 MPMX19_02954: MPMX19_02954 - Ribose import permease protein RbsC, at 212,974 to 213,951 _02954 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.776 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.897 kb on - strand, within MPMX19_02952at 210.897 kb on - strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.972 kb on - strand, within MPMX19_02952at 211.001 kb on + strand, within MPMX19_02952at 211.002 kb on - strand, within MPMX19_02952at 211.002 kb on - strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.191 kb on - strand, within MPMX19_02952at 211.275 kb on - strandat 211.275 kb on - strandat 211.320 kb on - strandat 211.320 kb on - strandat 211.320 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.623 kb on - strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 212.201 kb on + strand, within MPMX19_02953at 212.201 kb on + strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.388 kb on - strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.540 kb on + strand, within MPMX19_02953at 212.540 kb on + strand, within MPMX19_02953at 212.540 kb on + strand, within MPMX19_02953at 212.956 kb on + strandat 212.956 kb on + strandat 212.956 kb on + strandat 212.957 kb on - strandat 212.957 kb on - strandat 212.957 kb on - strandat 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.226 kb on + strand, within MPMX19_02954at 213.227 kb on - strand, within MPMX19_02954at 213.227 kb on - strand, within MPMX19_02954at 213.227 kb on - strand, within MPMX19_02954at 213.305 kb on - strand, within MPMX19_02954at 213.305 kb on - strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.479 kb on - strand, within MPMX19_02954at 213.479 kb on - strand, within MPMX19_02954at 213.479 kb on - strand, within MPMX19_02954at 213.505 kb on + strand, within MPMX19_02954at 213.505 kb on + strand, within MPMX19_02954at 213.505 kb on + strand, within MPMX19_02954at 213.506 kb on - strand, within MPMX19_02954at 213.506 kb on - strand, within MPMX19_02954at 213.506 kb on - strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.568 kb on + strand, within MPMX19_02954at 213.568 kb on + strand, within MPMX19_02954at 213.569 kb on - strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.641 kb on - strand, within MPMX19_02954

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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210,746 + MPMX19_02952 0.40 -0.9
210,746 + MPMX19_02952 0.40 -1.0
210,746 + MPMX19_02952 0.40 +0.7
210,746 + MPMX19_02952 0.40 -3.0
210,746 + MPMX19_02952 0.40 -2.0
210,747 - MPMX19_02952 0.40 -1.2
210,747 - MPMX19_02952 0.40 -1.2
210,747 - MPMX19_02952 0.40 -0.4
210,747 - MPMX19_02952 0.40 -0.6
210,747 - MPMX19_02952 0.40 +0.7
210,747 - MPMX19_02952 0.40 -0.2
210,776 + MPMX19_02952 0.43 -0.4
210,830 + MPMX19_02952 0.48 +0.4
210,830 + MPMX19_02952 0.48 -0.5
210,830 + MPMX19_02952 0.48 -1.3
210,830 + MPMX19_02952 0.48 -1.6
210,830 + MPMX19_02952 0.48 -0.9
210,830 + MPMX19_02952 0.48 +0.5
210,830 + MPMX19_02952 0.48 +1.4
210,830 + MPMX19_02952 0.48 -1.3
210,830 + MPMX19_02952 0.48 -0.9
210,830 + MPMX19_02952 0.48 +0.2
210,830 + MPMX19_02952 0.48 -1.5
210,830 + MPMX19_02952 0.48 +0.8
210,830 + MPMX19_02952 0.48 -1.2
210,830 + MPMX19_02952 0.48 -0.0
210,831 - MPMX19_02952 0.48 -0.7
210,831 - MPMX19_02952 0.48 -1.9
210,831 - MPMX19_02952 0.48 -0.9
210,831 - MPMX19_02952 0.48 +0.0
210,831 - MPMX19_02952 0.48 -1.2
210,831 - MPMX19_02952 0.48 -1.2
210,831 - MPMX19_02952 0.48 -1.4
210,831 - MPMX19_02952 0.48 -0.8
210,831 - MPMX19_02952 0.48 -1.3
210,897 - MPMX19_02952 0.54 -0.7
210,897 - MPMX19_02952 0.54 +0.3
210,950 + MPMX19_02952 0.59 -0.4
210,950 + MPMX19_02952 0.59 -0.8
210,950 + MPMX19_02952 0.59 -0.7
210,950 + MPMX19_02952 0.59 +0.4
210,950 + MPMX19_02952 0.59 -1.0
210,951 - MPMX19_02952 0.59 -1.3
210,951 - MPMX19_02952 0.59 -0.4
210,951 - MPMX19_02952 0.59 +0.2
210,971 + MPMX19_02952 0.61 -0.3
210,971 + MPMX19_02952 0.61 -1.0
210,971 + MPMX19_02952 0.61 -1.7
210,971 + MPMX19_02952 0.61 -0.6
210,972 - MPMX19_02952 0.61 -1.1
211,001 + MPMX19_02952 0.64 +0.6
211,002 - MPMX19_02952 0.64 -0.5
211,002 - MPMX19_02952 0.64 -0.5
211,133 + MPMX19_02952 0.77 -0.2
211,133 + MPMX19_02952 0.77 -0.5
211,133 + MPMX19_02952 0.77 -1.7
211,134 - MPMX19_02952 0.77 +0.2
211,134 - MPMX19_02952 0.77 -0.5
211,134 - MPMX19_02952 0.77 -0.2
211,134 - MPMX19_02952 0.77 -0.8
211,134 - MPMX19_02952 0.77 -0.2
211,157 + MPMX19_02952 0.79 -2.9
211,157 + MPMX19_02952 0.79 -1.2
211,157 + MPMX19_02952 0.79 -0.1
211,157 + MPMX19_02952 0.79 -0.3
211,157 + MPMX19_02952 0.79 -1.3
211,157 + MPMX19_02952 0.79 -0.5
211,157 + MPMX19_02952 0.79 -2.0
211,157 + MPMX19_02952 0.79 -0.6
211,158 - MPMX19_02952 0.79 -0.1
211,158 - MPMX19_02952 0.79 +0.9
211,158 - MPMX19_02952 0.79 +0.5
211,158 - MPMX19_02952 0.79 -0.5
211,158 - MPMX19_02952 0.79 -0.5
211,191 - MPMX19_02952 0.82 -0.9
211,275 - -0.4
211,275 - +0.4
211,320 - -1.4
211,320 - -0.1
211,320 - +1.3
211,365 - -0.1
211,365 - -0.9
211,365 - -3.0
211,365 - -0.5
211,365 - -2.5
211,365 - -0.3
211,623 - MPMX19_02953 0.11 -1.7
211,715 + MPMX19_02953 0.17 -1.3
211,715 + MPMX19_02953 0.17 -2.2
211,715 + MPMX19_02953 0.17 -1.2
211,715 + MPMX19_02953 0.17 +0.2
211,715 + MPMX19_02953 0.17 -1.8
211,716 - MPMX19_02953 0.17 +0.4
211,716 - MPMX19_02953 0.17 -1.5
211,716 - MPMX19_02953 0.17 -1.0
211,716 - MPMX19_02953 0.17 +1.9
212,201 + MPMX19_02953 0.49 -1.4
212,201 + MPMX19_02953 0.49 -0.8
212,202 - MPMX19_02953 0.49 -0.7
212,202 - MPMX19_02953 0.49 -0.7
212,202 - MPMX19_02953 0.49 -1.6
212,202 - MPMX19_02953 0.49 -0.5
212,388 - MPMX19_02953 0.62 +1.4
212,465 + MPMX19_02953 0.67 -0.8
212,465 + MPMX19_02953 0.67 -0.3
212,465 + MPMX19_02953 0.67 +0.2
212,465 + MPMX19_02953 0.67 -0.1
212,465 + MPMX19_02953 0.67 -1.0
212,465 + MPMX19_02953 0.67 +0.5
212,465 + MPMX19_02953 0.67 +0.0
212,465 + MPMX19_02953 0.67 -0.2
212,466 - MPMX19_02953 0.67 +0.5
212,466 - MPMX19_02953 0.67 -1.1
212,466 - MPMX19_02953 0.67 +1.5
212,466 - MPMX19_02953 0.67 -0.3
212,466 - MPMX19_02953 0.67 -2.2
212,466 - MPMX19_02953 0.67 -0.6
212,466 - MPMX19_02953 0.67 -1.0
212,466 - MPMX19_02953 0.67 -0.5
212,540 + MPMX19_02953 0.72 -1.3
212,540 + MPMX19_02953 0.72 -1.2
212,540 + MPMX19_02953 0.72 -1.8
212,956 + -0.4
212,956 + +0.8
212,956 + -0.3
212,957 - +0.8
212,957 - +0.2
212,957 - -0.7
213,193 + MPMX19_02954 0.22 -1.3
213,193 + MPMX19_02954 0.22 -0.1
213,193 + MPMX19_02954 0.22 +1.2
213,193 + MPMX19_02954 0.22 -0.6
213,193 + MPMX19_02954 0.22 +0.1
213,193 + MPMX19_02954 0.22 -0.5
213,194 - MPMX19_02954 0.22 +0.4
213,194 - MPMX19_02954 0.22 +0.9
213,194 - MPMX19_02954 0.22 -0.0
213,194 - MPMX19_02954 0.22 -0.9
213,194 - MPMX19_02954 0.22 +0.4
213,194 - MPMX19_02954 0.22 -1.2
213,194 - MPMX19_02954 0.22 -1.3
213,194 - MPMX19_02954 0.22 -1.0
213,194 - MPMX19_02954 0.22 +1.5
213,226 + MPMX19_02954 0.26 -0.3
213,227 - MPMX19_02954 0.26 +0.8
213,227 - MPMX19_02954 0.26 -1.6
213,227 - MPMX19_02954 0.26 -1.6
213,305 - MPMX19_02954 0.34 +0.8
213,305 - MPMX19_02954 0.34 -0.5
213,478 + MPMX19_02954 0.52 -1.0
213,478 + MPMX19_02954 0.52 -0.1
213,478 + MPMX19_02954 0.52 +0.9
213,478 + MPMX19_02954 0.52 -0.7
213,478 + MPMX19_02954 0.52 +0.0
213,479 - MPMX19_02954 0.52 -0.7
213,479 - MPMX19_02954 0.52 +0.1
213,479 - MPMX19_02954 0.52 -0.8
213,505 + MPMX19_02954 0.54 -0.3
213,505 + MPMX19_02954 0.54 +0.3
213,505 + MPMX19_02954 0.54 -0.5
213,506 - MPMX19_02954 0.54 -1.3
213,506 - MPMX19_02954 0.54 -0.5
213,506 - MPMX19_02954 0.54 -0.1
213,544 + MPMX19_02954 0.58 -0.2
213,544 + MPMX19_02954 0.58 -1.3
213,544 + MPMX19_02954 0.58 +0.1
213,544 + MPMX19_02954 0.58 +0.3
213,568 + MPMX19_02954 0.61 +1.0
213,568 + MPMX19_02954 0.61 -0.4
213,569 - MPMX19_02954 0.61 -1.0
213,640 + MPMX19_02954 0.68 -0.7
213,640 + MPMX19_02954 0.68 -0.2
213,640 + MPMX19_02954 0.68 -1.1
213,640 + MPMX19_02954 0.68 -2.3
213,640 + MPMX19_02954 0.68 -0.4
213,641 - MPMX19_02954 0.68 +0.4

Or see this region's nucleotide sequence