Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides MPMX19_02918 and MPMX19_02919 are separated by 16 nucleotides MPMX19_02919 and MPMX19_02920 are separated by 293 nucleotides
MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899
_02917
MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804
_02918
MPMX19_02919: MPMX19_02919 - hypothetical protein, at 172,821 to 173,837
_02919
MPMX19_02920: MPMX19_02920 - hypothetical protein, at 174,131 to 175,396
_02920
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 173.943 kb on + strand at 173.944 kb on - strand at 174.308 kb on + strand, within MPMX19_02920
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 172,413 + MPMX19_02918 0.57 -0.4 172,413 + MPMX19_02918 0.57 +0.3 172,413 + MPMX19_02918 0.57 +0.1 172,413 + MPMX19_02918 0.57 -0.7 172,413 + MPMX19_02918 0.57 -0.8 172,413 + MPMX19_02918 0.57 -0.5 172,413 + MPMX19_02918 0.57 +0.5 172,413 + MPMX19_02918 0.57 -1.6 172,413 + MPMX19_02918 0.57 +0.8 172,414 - MPMX19_02918 0.57 -0.7 172,414 - MPMX19_02918 0.57 +0.3 172,414 - MPMX19_02918 0.57 +0.5 172,414 - MPMX19_02918 0.57 -1.3 172,701 + MPMX19_02918 0.89 -0.5 172,701 + MPMX19_02918 0.89 -0.6 172,702 - MPMX19_02918 0.89 -1.2 172,702 - MPMX19_02918 0.89 -0.5 172,702 - MPMX19_02918 0.89 -1.5 172,791 + +1.3 172,791 + +0.5 172,791 + +1.5 172,791 + +0.6 172,791 + +1.8 172,791 + +0.4 172,791 + -1.2 172,791 + -1.1 172,791 + +1.8 172,791 + -0.6 172,791 + -1.2 172,791 + +0.1 172,791 + +0.8 172,792 - -0.5 172,792 - +0.0 172,792 - +0.1 172,792 - -1.1 172,792 - -0.9 172,792 - -1.8 172,792 - -1.3 172,792 - -0.5 172,792 - -0.1 172,792 - +0.1 172,792 - -1.7 172,792 - +0.4 172,792 - +0.5 173,943 + +0.9 173,944 - +0.9 174,308 + MPMX19_02920 0.14 +0.3
Or see this region's nucleotide sequence