Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02758 and MPMX19_02759 are separated by 159 nucleotides MPMX19_02759 and MPMX19_02760 are separated by 245 nucleotides MPMX19_02760 and MPMX19_02761 are separated by 187 nucleotides
MPMX19_02758: MPMX19_02758 - hypothetical protein, at 2,902,486 to 2,904,138
_02758
MPMX19_02759: MPMX19_02759 - Xanthine phosphoribosyltransferase, at 2,904,298 to 2,904,792
_02759
MPMX19_02760: MPMX19_02760 - tRNA-Arg, at 2,905,038 to 2,905,114
_02760
MPMX19_02761: MPMX19_02761 - hypothetical protein, at 2,905,302 to 2,907,401
_02761
Position (kb)
2905
2906 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2904.201 kb on + strand at 2904.201 kb on + strand at 2904.201 kb on + strand at 2904.202 kb on - strand at 2904.202 kb on - strand at 2904.202 kb on - strand at 2904.202 kb on - strand at 2904.202 kb on - strand at 2904.202 kb on - strand at 2904.202 kb on - strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.227 kb on + strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.228 kb on - strand at 2904.428 kb on + strand, within MPMX19_02759 at 2904.428 kb on + strand, within MPMX19_02759 at 2904.428 kb on + strand, within MPMX19_02759 at 2904.428 kb on + strand, within MPMX19_02759 at 2904.428 kb on + strand, within MPMX19_02759 at 2904.428 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.590 kb on + strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.591 kb on - strand, within MPMX19_02759 at 2904.795 kb on + strand at 2904.796 kb on - strand at 2904.796 kb on - strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.826 kb on + strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.827 kb on - strand at 2904.828 kb on + strand at 2904.828 kb on + strand at 2904.828 kb on + strand at 2904.828 kb on + strand at 2904.828 kb on + strand at 2904.828 kb on + strand at 2904.829 kb on - strand at 2904.829 kb on - strand at 2904.829 kb on - strand at 2904.829 kb on - strand at 2904.829 kb on - strand at 2904.909 kb on + strand at 2904.909 kb on + strand at 2904.909 kb on + strand at 2904.909 kb on + strand at 2904.910 kb on - strand at 2904.910 kb on - strand at 2905.131 kb on + strand at 2905.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 2,904,201 + -0.1 2,904,201 + +1.1 2,904,201 + +0.7 2,904,202 - -0.6 2,904,202 - -1.7 2,904,202 - -1.1 2,904,202 - +0.7 2,904,202 - +0.4 2,904,202 - +0.2 2,904,202 - -1.1 2,904,227 + +0.4 2,904,227 + +1.0 2,904,227 + +0.3 2,904,227 + +0.7 2,904,227 + +0.2 2,904,227 + -0.8 2,904,227 + +1.1 2,904,227 + +0.1 2,904,227 + +1.2 2,904,227 + +2.2 2,904,228 - -0.3 2,904,228 - -0.8 2,904,228 - -0.0 2,904,228 - -0.3 2,904,228 - -0.4 2,904,228 - +0.7 2,904,228 - -1.1 2,904,228 - +0.0 2,904,228 - +0.9 2,904,228 - -1.5 2,904,228 - -1.1 2,904,228 - -0.1 2,904,228 - -0.3 2,904,228 - -2.1 2,904,228 - +0.0 2,904,428 + MPMX19_02759 0.26 -0.6 2,904,428 + MPMX19_02759 0.26 +0.2 2,904,428 + MPMX19_02759 0.26 +0.5 2,904,428 + MPMX19_02759 0.26 +0.2 2,904,428 + MPMX19_02759 0.26 +0.7 2,904,428 + MPMX19_02759 0.26 +0.2 2,904,590 + MPMX19_02759 0.59 -2.3 2,904,590 + MPMX19_02759 0.59 +0.4 2,904,590 + MPMX19_02759 0.59 -1.4 2,904,590 + MPMX19_02759 0.59 -0.4 2,904,590 + MPMX19_02759 0.59 -0.6 2,904,590 + MPMX19_02759 0.59 -1.1 2,904,590 + MPMX19_02759 0.59 +0.7 2,904,590 + MPMX19_02759 0.59 -0.4 2,904,590 + MPMX19_02759 0.59 -0.9 2,904,590 + MPMX19_02759 0.59 -1.3 2,904,590 + MPMX19_02759 0.59 -0.7 2,904,590 + MPMX19_02759 0.59 -0.1 2,904,591 - MPMX19_02759 0.59 -0.4 2,904,591 - MPMX19_02759 0.59 -1.3 2,904,591 - MPMX19_02759 0.59 -1.1 2,904,591 - MPMX19_02759 0.59 -0.4 2,904,591 - MPMX19_02759 0.59 +0.2 2,904,591 - MPMX19_02759 0.59 -1.3 2,904,591 - MPMX19_02759 0.59 -0.3 2,904,591 - MPMX19_02759 0.59 -1.3 2,904,591 - MPMX19_02759 0.59 -0.4 2,904,795 + +1.0 2,904,796 - +0.3 2,904,796 - -1.1 2,904,826 + -2.1 2,904,826 + -0.8 2,904,826 + -2.1 2,904,826 + +0.3 2,904,826 + +0.3 2,904,826 + -0.8 2,904,826 + -0.4 2,904,826 + +0.3 2,904,826 + -1.3 2,904,827 - -0.8 2,904,827 - -1.3 2,904,827 - +0.9 2,904,827 - -0.9 2,904,827 - +1.4 2,904,827 - -0.5 2,904,827 - -0.4 2,904,827 - -1.7 2,904,827 - +0.4 2,904,827 - -0.2 2,904,828 + +1.2 2,904,828 + +1.0 2,904,828 + -0.6 2,904,828 + -0.1 2,904,828 + +1.7 2,904,828 + +1.3 2,904,829 - -0.2 2,904,829 - -0.1 2,904,829 - +0.3 2,904,829 - -0.3 2,904,829 - +1.3 2,904,909 + +0.7 2,904,909 + +1.0 2,904,909 + +0.5 2,904,909 + +0.7 2,904,910 - +0.9 2,904,910 - +0.4 2,905,131 + -0.4 2,905,131 + -0.8
Or see this region's nucleotide sequence