Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00655 and MPMX19_00656 are separated by 39 nucleotides MPMX19_00656 and MPMX19_00657 are separated by 122 nucleotides MPMX19_00657 and MPMX19_00658 overlap by 4 nucleotides
MPMX19_00655: MPMX19_00655 - hypothetical protein, at 674,397 to 675,704
_00655
MPMX19_00656: MPMX19_00656 - Sensor histidine kinase RcsC, at 675,744 to 677,462
_00656
MPMX19_00657: MPMX19_00657 - Response regulator protein TmoT, at 677,585 to 678,181
_00657
MPMX19_00658: MPMX19_00658 - Adaptive-response sensory-kinase SasA, at 678,178 to 680,277
_00658
Position (kb) 675
676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.745 kb on + strand at 675.745 kb on + strand at 675.746 kb on - strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 676.300 kb on + strand, within MPMX19_00656 at 676.300 kb on + strand, within MPMX19_00656 at 676.300 kb on + strand, within MPMX19_00656 at 676.300 kb on + strand, within MPMX19_00656 at 676.301 kb on - strand, within MPMX19_00656 at 676.301 kb on - strand, within MPMX19_00656 at 676.301 kb on - strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.780 kb on + strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.781 kb on - strand, within MPMX19_00656 at 676.798 kb on + strand, within MPMX19_00656 at 676.798 kb on + strand, within MPMX19_00656 at 676.798 kb on + strand, within MPMX19_00656 at 676.798 kb on + strand, within MPMX19_00656 at 676.798 kb on + strand, within MPMX19_00656 at 676.798 kb on + strand, within MPMX19_00656 at 676.799 kb on - strand, within MPMX19_00656 at 676.799 kb on - strand, within MPMX19_00656 at 676.799 kb on - strand, within MPMX19_00656 at 676.799 kb on - strand, within MPMX19_00656 at 676.799 kb on - strand, within MPMX19_00656 at 676.799 kb on - strand, within MPMX19_00656 at 676.933 kb on + strand, within MPMX19_00656 at 676.933 kb on + strand, within MPMX19_00656 at 676.933 kb on + strand, within MPMX19_00656 at 676.933 kb on + strand, within MPMX19_00656 at 676.933 kb on + strand, within MPMX19_00656 at 676.933 kb on + strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 676.934 kb on - strand, within MPMX19_00656 at 677.119 kb on + strand, within MPMX19_00656 at 677.120 kb on - strand, within MPMX19_00656 at 677.120 kb on - strand, within MPMX19_00656 at 677.215 kb on + strand, within MPMX19_00656 at 677.216 kb on - strand, within MPMX19_00656 at 677.216 kb on - strand, within MPMX19_00656 at 677.216 kb on - strand, within MPMX19_00656 at 677.216 kb on - strand, within MPMX19_00656 at 677.216 kb on - strand, within MPMX19_00656 at 677.449 kb on - strand at 677.449 kb on - strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.515 kb on + strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.516 kb on - strand at 677.518 kb on + strand at 677.518 kb on + strand at 677.518 kb on + strand at 677.518 kb on + strand at 677.518 kb on + strand at 677.519 kb on - strand at 677.519 kb on - strand at 677.519 kb on - strand at 677.519 kb on - strand at 677.519 kb on - strand at 677.553 kb on + strand at 677.553 kb on + strand at 677.553 kb on + strand at 677.553 kb on + strand at 677.553 kb on + strand at 677.553 kb on + strand at 677.553 kb on + strand at 677.554 kb on - strand at 677.554 kb on - strand at 677.554 kb on - strand at 677.554 kb on - strand at 677.554 kb on - strand at 677.554 kb on - strand at 677.954 kb on + strand, within MPMX19_00657 at 677.954 kb on + strand, within MPMX19_00657 at 677.954 kb on + strand, within MPMX19_00657 at 678.224 kb on + strand at 678.224 kb on + strand at 678.224 kb on + strand at 678.225 kb on - strand at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.408 kb on + strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658 at 678.409 kb on - strand, within MPMX19_00658
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 675,438 + MPMX19_00655 0.80 -1.9 675,438 + MPMX19_00655 0.80 -0.0 675,438 + MPMX19_00655 0.80 +0.1 675,438 + MPMX19_00655 0.80 +0.9 675,438 + MPMX19_00655 0.80 +0.9 675,438 + MPMX19_00655 0.80 -0.4 675,439 - MPMX19_00655 0.80 -0.5 675,439 - MPMX19_00655 0.80 -0.5 675,439 - MPMX19_00655 0.80 -0.6 675,439 - MPMX19_00655 0.80 -1.3 675,439 - MPMX19_00655 0.80 -2.5 675,439 - MPMX19_00655 0.80 +0.1 675,439 - MPMX19_00655 0.80 -0.1 675,439 - MPMX19_00655 0.80 -2.0 675,439 - MPMX19_00655 0.80 +0.7 675,439 - MPMX19_00655 0.80 -1.0 675,439 - MPMX19_00655 0.80 -0.0 675,439 - MPMX19_00655 0.80 -0.5 675,439 - MPMX19_00655 0.80 -0.8 675,745 + +0.5 675,745 + -2.4 675,746 - +0.3 675,877 + -0.1 675,877 + +0.3 675,877 + -1.5 675,877 + +0.9 675,877 + -0.8 675,877 + -1.6 675,877 + -0.8 675,877 + +1.1 675,877 + -0.6 675,877 + -1.6 675,877 + +0.1 675,878 - -0.3 675,878 - -0.6 675,878 - -1.9 675,878 - -0.0 675,878 - +0.8 675,878 - -1.3 675,878 - -0.0 675,878 - +0.5 675,878 - -1.6 675,878 - -0.3 675,878 - -0.6 675,878 - -0.6 675,878 - +0.7 676,300 + MPMX19_00656 0.32 -0.3 676,300 + MPMX19_00656 0.32 -0.3 676,300 + MPMX19_00656 0.32 -0.2 676,300 + MPMX19_00656 0.32 -0.7 676,301 - MPMX19_00656 0.32 -0.6 676,301 - MPMX19_00656 0.32 +1.5 676,301 - MPMX19_00656 0.32 +0.5 676,780 + MPMX19_00656 0.60 -0.9 676,780 + MPMX19_00656 0.60 -2.5 676,780 + MPMX19_00656 0.60 +1.2 676,780 + MPMX19_00656 0.60 -0.9 676,780 + MPMX19_00656 0.60 +1.5 676,780 + MPMX19_00656 0.60 -0.8 676,780 + MPMX19_00656 0.60 +0.5 676,780 + MPMX19_00656 0.60 -1.6 676,780 + MPMX19_00656 0.60 -0.4 676,781 - MPMX19_00656 0.60 -1.0 676,781 - MPMX19_00656 0.60 -0.5 676,781 - MPMX19_00656 0.60 +0.7 676,781 - MPMX19_00656 0.60 -1.5 676,781 - MPMX19_00656 0.60 -0.4 676,781 - MPMX19_00656 0.60 -2.2 676,781 - MPMX19_00656 0.60 +0.8 676,781 - MPMX19_00656 0.60 -0.0 676,781 - MPMX19_00656 0.60 -0.0 676,781 - MPMX19_00656 0.60 -0.8 676,781 - MPMX19_00656 0.60 +1.8 676,781 - MPMX19_00656 0.60 -0.7 676,798 + MPMX19_00656 0.61 -0.5 676,798 + MPMX19_00656 0.61 -2.2 676,798 + MPMX19_00656 0.61 -1.5 676,798 + MPMX19_00656 0.61 +0.0 676,798 + MPMX19_00656 0.61 -0.3 676,798 + MPMX19_00656 0.61 +0.4 676,799 - MPMX19_00656 0.61 -0.6 676,799 - MPMX19_00656 0.61 +0.4 676,799 - MPMX19_00656 0.61 -1.8 676,799 - MPMX19_00656 0.61 -0.0 676,799 - MPMX19_00656 0.61 -0.0 676,799 - MPMX19_00656 0.61 -1.4 676,933 + MPMX19_00656 0.69 -0.8 676,933 + MPMX19_00656 0.69 -0.7 676,933 + MPMX19_00656 0.69 -0.6 676,933 + MPMX19_00656 0.69 -0.2 676,933 + MPMX19_00656 0.69 -2.1 676,933 + MPMX19_00656 0.69 +1.5 676,934 - MPMX19_00656 0.69 -0.6 676,934 - MPMX19_00656 0.69 -0.3 676,934 - MPMX19_00656 0.69 -0.2 676,934 - MPMX19_00656 0.69 -0.0 676,934 - MPMX19_00656 0.69 +0.4 676,934 - MPMX19_00656 0.69 +0.5 676,934 - MPMX19_00656 0.69 -0.3 676,934 - MPMX19_00656 0.69 -1.2 677,119 + MPMX19_00656 0.80 -0.9 677,120 - MPMX19_00656 0.80 -1.6 677,120 - MPMX19_00656 0.80 -0.5 677,215 + MPMX19_00656 0.86 +0.5 677,216 - MPMX19_00656 0.86 -1.0 677,216 - MPMX19_00656 0.86 -0.5 677,216 - MPMX19_00656 0.86 +0.3 677,216 - MPMX19_00656 0.86 -1.5 677,216 - MPMX19_00656 0.86 -1.8 677,449 - -1.0 677,449 - +0.5 677,515 + +0.3 677,515 + +0.5 677,515 + -1.5 677,515 + +0.4 677,515 + -0.6 677,515 + +0.3 677,515 + -0.4 677,515 + +1.8 677,515 + -0.4 677,515 + +1.8 677,515 + +0.1 677,515 + -2.5 677,515 + +1.5 677,515 + +0.1 677,515 + +0.2 677,515 + -1.0 677,515 + -0.5 677,515 + +0.1 677,515 + +0.8 677,515 + -1.9 677,515 + -0.0 677,515 + +0.5 677,515 + -0.0 677,516 - -0.5 677,516 - +0.7 677,516 - +1.2 677,516 - +0.6 677,516 - +0.8 677,516 - +0.1 677,516 - -0.1 677,516 - +0.7 677,516 - -0.5 677,516 - -0.2 677,516 - +0.3 677,516 - +0.4 677,516 - -0.8 677,516 - -1.0 677,516 - -0.3 677,516 - +0.8 677,516 - -1.5 677,516 - +0.0 677,516 - +0.3 677,516 - -1.0 677,516 - -0.5 677,516 - +0.0 677,516 - +0.5 677,516 - -0.2 677,516 - -0.6 677,516 - +0.3 677,516 - -0.0 677,518 + -1.1 677,518 + -0.5 677,518 + +1.0 677,518 + +0.3 677,518 + -0.5 677,519 - +0.7 677,519 - -1.1 677,519 - +0.3 677,519 - +0.2 677,519 - +0.4 677,553 + +0.3 677,553 + -1.8 677,553 + -0.0 677,553 + +2.3 677,553 + -0.3 677,553 + +1.2 677,553 + +0.2 677,554 - -0.1 677,554 - -1.2 677,554 - -1.2 677,554 - -1.5 677,554 - -0.2 677,554 - -0.3 677,954 + MPMX19_00657 0.62 -1.3 677,954 + MPMX19_00657 0.62 +1.0 677,954 + MPMX19_00657 0.62 +0.5 678,224 + +0.7 678,224 + -0.9 678,224 + +0.1 678,225 - -0.0 678,408 + MPMX19_00658 0.11 +0.1 678,408 + MPMX19_00658 0.11 -1.3 678,408 + MPMX19_00658 0.11 -0.2 678,408 + MPMX19_00658 0.11 -1.9 678,408 + MPMX19_00658 0.11 -0.8 678,408 + MPMX19_00658 0.11 +1.0 678,408 + MPMX19_00658 0.11 +1.1 678,408 + MPMX19_00658 0.11 -0.7 678,408 + MPMX19_00658 0.11 -1.4 678,408 + MPMX19_00658 0.11 +0.2 678,408 + MPMX19_00658 0.11 -0.6 678,408 + MPMX19_00658 0.11 -0.0 678,408 + MPMX19_00658 0.11 -0.0 678,408 + MPMX19_00658 0.11 +0.1 678,408 + MPMX19_00658 0.11 -0.0 678,409 - MPMX19_00658 0.11 -1.2 678,409 - MPMX19_00658 0.11 -0.4 678,409 - MPMX19_00658 0.11 +0.2 678,409 - MPMX19_00658 0.11 -0.1 678,409 - MPMX19_00658 0.11 -0.0 678,409 - MPMX19_00658 0.11 -1.6 678,409 - MPMX19_00658 0.11 -0.7 678,409 - MPMX19_00658 0.11 -0.9 678,409 - MPMX19_00658 0.11 +1.3 678,409 - MPMX19_00658 0.11 -1.3 678,409 - MPMX19_00658 0.11 -0.5 678,409 - MPMX19_00658 0.11 +1.1 678,409 - MPMX19_00658 0.11 -0.4 678,409 - MPMX19_00658 0.11 -0.6 678,409 - MPMX19_00658 0.11 -1.3
Or see this region's nucleotide sequence